Rorug06G0352300

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
50133840 .. 50138356
4517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0352300.1

Sequence Viewer

Length: 924 bp
ATGAGTAGCCGTGCCAGCAGAACTCTTTATGTCGGGAACCTCCCCGGTGATATACGCGAGAGAGAGGTGGAAGATTTGTTTTACAAGTATGGACGCATTGCCCATATTGACCTCAAGGTGCCCCCAAGGCCTCCTGGTTATGCATTTGTTGAGTTTGAAGATGCTCGTGATGCTGAAGATGCAATCCGCGGCCGTGATGGCTATGATTTTGATGGCAATCGCTTGAGGGTTGAACTTGCGCATGGTGGCCGTGGACATTCTTCTGGGGGAGATCGTCATAGAGATAGTGGTGGTGGTGGTGGTCGAGGTGGACGTGGAATGTCTAGGCGCTCCGATTATCGTGTGTTAGTCAGTGGACTACCCTCTTCAGCTTCATGGCAAGATCTTAAGGATCACATGCGACGGGCTGGGGATGTCTGTTTCTCCCAAGTTTTCCGTGATGGTAGTGGCACAACAGGAGTAGTGGACTACACTAACTATGAAGACATGAAGTATGCAATAAAAAAGCTTGATGGCTCTGACTTCAGGAATGCTTTTTCCCGGTCTTCTGTTCGGGTGAGAGAATATGATGCGAAGCGGGACTCGTCTATGAGCCCCGGTCGTGGTCGATCTCATTCAGGAGGTAGAAGCTACAGTCGCAGTCGTAGTAGAAGTTATAGCCGGAGCAGAAGCAGGAGCAAGTCTCCTAAACCCAAATCTTCACGCCGCTCGCCTGGTAGATCTCGATCAAGGTCTGGGTCTCCACCCCGCTCACGATCAAAGTCTCGCTCCCCGTCAAGATCACGATCAAGAAGCAGATCTCCACTGCCTTCAAAGCGCACAAGTAAAAGCCCGAAGAAAGACACAGGTAAAAGTCCGAAGAAGCGCAGTGCCAGCCGAAGTCCAAGCAGGAGCAGGAGCAGGAGCAAGAGTTTGTCACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

307

Amino Acids

34.24

Weight (kDa)

11.36

Isoelectric Point (pI)

104.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 76 2.9e-18 RNA recognition motif
RRM_1 PF00076 115 - 177 3e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 240
AccB1I GGYRCC 1 cut(s) 118
AccBSI CCGCTC 2 cut(s) 708, 750
AccII CGCG 2 cut(s) 57, 189
AciI CCGC 5 cut(s) 187, 189, 577, 706, 748
AclWI GGATC 1 cut(s) 399
AcoI YGGCCR 2 cut(s) 190, 247
AcuI CTGAAG 3 cut(s) 195, 351, 508
AfiI CCNNNNNNNGG 1 cut(s) 602
AflII CTTAAG 1 cut(s) 386
AgsI TTSAA 3 cut(s) 158, 233, 813
AjiI CACGTC 1 cut(s) 314
AjnI CCWGG 2 cut(s) 133, 712
AluBI AGCT 3 cut(s) 371, 508, 630
AluI AGCT 3 cut(s) 371, 508, 630
Alw26I GTCTC 3 cut(s) 687, 744, 768
AlwI GGATC 1 cut(s) 399
AoxI GGCC 3 cut(s) 128, 190, 247
AspLEI GCGC 4 cut(s) 241, 330, 819, 867
AsuC2I CCSGG 3 cut(s) 45, 541, 597
AsuHPI GGTGA 2 cut(s) 59, 568
BaeGI GKGCMC 1 cut(s) 123
BanI GGYRCC 1 cut(s) 118
BanII GRGCYC 1 cut(s) 596
BauI CACGAG 1 cut(s) 165
BbsI GAAGAC 2 cut(s) 489, 537
BccI CCATC 4 cut(s) 191, 206, 434, 506
BceAI ACGGC 2 cut(s) 177, 234
BciT130I CCWGG 2 cut(s) 135, 714
BcnI CCSGG 3 cut(s) 45, 541, 597
BcoDI GTCTC 3 cut(s) 687, 744, 768
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 631
BfoI RGCGCY 1 cut(s) 331
BfrI CTTAAG 1 cut(s) 386
BglI GCCNNNNNGGC 2 cut(s) 127, 198
BglII AGATCT 3 cut(s) 382, 719, 797
BisI GCNGC 2 cut(s) 190, 706
BlsI GCNGC 2 cut(s) 191, 707
Bme1390I CCNGG 5 cut(s) 45, 135, 541, 597, 714
BmgBI CACGTC 1 cut(s) 314
BmiI GGNNCC 2 cut(s) 38, 120
BmrFI CCNGG 5 cut(s) 45, 135, 541, 597, 714
BmsI GCATC 4 cut(s) 151, 160, 169, 559
BpiI GAAGAC 2 cut(s) 489, 537
BplI GAGNNNNNCTC 2 cut(s) 667, 699
BpuEI CTTGAG 2 cut(s) 98, 244
BpuMI CCSGG 3 cut(s) 45, 541, 597
BsaBI GATNNNNATC 3 cut(s) 216, 724, 784
BsaI GGTCTC 1 cut(s) 744
BsaJI CCNNGG 5 cut(s) 43, 125, 187, 250, 595
BsaXI ACNNNNNCTCC 1 cut(s) 895
Bsc4I CCNNNNNNNGG 1 cut(s) 602
Bse3DI GCAATG 1 cut(s) 96
Bse8I GATNNNNATC 3 cut(s) 216, 724, 784
BseBI CCWGG 2 cut(s) 135, 714
BseDI CCNNGG 5 cut(s) 43, 125, 187, 250, 595
BseGI GGATG 1 cut(s) 418
BseJI GATNNNNATC 3 cut(s) 216, 724, 784
BseLI CCNNNNNNNGG 1 cut(s) 602
BseMI GCAATG 1 cut(s) 96
BseSI GKGCMC 1 cut(s) 123
BseX3I CGGCCG 1 cut(s) 190
BseYI CCCAGC 1 cut(s) 407
Bsh1236I CGCG 2 cut(s) 57, 189
Bsh1285I CGRYCG 2 cut(s) 193, 601
BshFI GGCC 3 cut(s) 130, 192, 249
BshNI GGYRCC 1 cut(s) 118
BsiEI CGRYCG 2 cut(s) 193, 601
BsiSI CCGG 4 cut(s) 45, 541, 597, 661
BslFI GGGAC 1 cut(s) 593
BslI CCNNNNNNNGG 1 cut(s) 602
BsmAI GTCTC 3 cut(s) 687, 744, 768
BsmFI GGGAC 1 cut(s) 593
BsmI GAATGC 1 cut(s) 535
BsnI GGCC 3 cut(s) 130, 192, 249
Bso31I GGTCTC 1 cut(s) 744
Bsp1286I GDGCHC 2 cut(s) 123, 596
BspACI CCGC 5 cut(s) 187, 189, 577, 706, 748
BspANI GGCC 3 cut(s) 130, 192, 249
BspFNI CGCG 2 cut(s) 57, 189
BspLI GGNNCC 2 cut(s) 38, 120
BspPI GGATC 1 cut(s) 399
BspT107I GGYRCC 1 cut(s) 118
BspTI CTTAAG 1 cut(s) 386
BspTNI GGTCTC 1 cut(s) 744
BsrBI CCGCTC 2 cut(s) 708, 750
BsrDI GCAATG 1 cut(s) 96
BssECI CCNNGG 5 cut(s) 43, 125, 187, 250, 595
BssSI CACGAG 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 125
Bst2BI CACGAG 1 cut(s) 165
Bst2UI CCWGG 2 cut(s) 135, 714
Bst4CI ACNGT 2 cut(s) 635, 921
Bst6I CTCTTC 1 cut(s) 370
BstAFI CTTAAG 1 cut(s) 386
BstC8I GCNNGC 3 cut(s) 16, 710, 874
BstDSI CCRYGG 2 cut(s) 187, 250
BstF5I GGATG 1 cut(s) 418
BstFNI CGCG 2 cut(s) 57, 189
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 4 cut(s) 241, 330, 819, 867
BstMAI GTCTC 3 cut(s) 687, 744, 768
BstMCI CGRYCG 2 cut(s) 193, 601
BstMWI GCNNNNNNNGC 8 cut(s) 15, 127, 170, 179, 198, 636, 814, 873
BstNI CCWGG 2 cut(s) 135, 714
BstNSI RCATGY 1 cut(s) 400
BstSCI CCNGG 5 cut(s) 43, 133, 539, 595, 712
BstSFI CTRYAG 1 cut(s) 631
BstSLI GKGCMC 1 cut(s) 123
BstUI CGCG 2 cut(s) 57, 189
BstV2I GAAGAC 2 cut(s) 489, 537
BstX2I RGATCY 3 cut(s) 382, 719, 797
BstYI RGATCY 3 cut(s) 382, 719, 797
BstZI CGGCCG 1 cut(s) 190
BsuRI GGCC 3 cut(s) 130, 192, 249
BtgI CCRYGG 2 cut(s) 187, 250
BtrI CACGTC 1 cut(s) 314
BtsCI GGATG 1 cut(s) 418
BtsI GCAGTG 2 cut(s) 803, 874
BtsIMutI CAGTG 3 cut(s) 358, 803, 874
Cac8I GCNNGC 3 cut(s) 16, 710, 874
CfoI GCGC 4 cut(s) 241, 330, 819, 867
Cfr42I CCGCGG 1 cut(s) 190
CseI GACGC 1 cut(s) 102
CviAII CATG 4 cut(s) 242, 375, 397, 487
EaeI YGGCCR 2 cut(s) 190, 247
EagI CGGCCG 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 370
EclXI CGGCCG 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 125
Eco147I AGGCCT 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 596
Eco31I GGTCTC 1 cut(s) 744
Eco52I CGGCCG 1 cut(s) 190
Eco57I CTGAAG 3 cut(s) 195, 351, 508
EcoRII CCWGG 2 cut(s) 133, 712
EcoT14I CCWWGG 1 cut(s) 125
EcoT22I ATGCAT 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 596
ErhI CCWWGG 1 cut(s) 125
FaeI CATG 4 cut(s) 245, 378, 400, 490
FaqI GGGAC 1 cut(s) 593
FatI CATG 4 cut(s) 241, 374, 396, 486
FauI CCCGC 2 cut(s) 570, 755
Fnu4HI GCNGC 2 cut(s) 190, 706
FokI GGATG 1 cut(s) 425
FriOI GRGCYC 1 cut(s) 596
Fsp4HI GCNGC 2 cut(s) 190, 706
FspBI CTAG 1 cut(s) 324
FspI TGCGCA 1 cut(s) 240
GlaI GCGC 4 cut(s) 240, 329, 818, 866
GluI GCNGC 2 cut(s) 190, 706
GsaI CCCAGC 1 cut(s) 411
HaeII RGCGCY 1 cut(s) 331
HaeIII GGCC 3 cut(s) 130, 192, 249
HapII CCGG 4 cut(s) 45, 541, 597, 661
HgaI GACGC 1 cut(s) 102
HhaI GCGC 4 cut(s) 241, 330, 819, 867
Hin1II CATG 4 cut(s) 245, 378, 400, 490
Hin6I GCGC 4 cut(s) 239, 328, 817, 865
HinP1I GCGC 4 cut(s) 239, 328, 817, 865
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 1 cut(s) 581
HpaII CCGG 4 cut(s) 45, 541, 597, 661
HphI GGTGA 2 cut(s) 59, 568
Hpy166II GTNNAC 4 cut(s) 254, 311, 356, 466
Hpy188I TCNGA 3 cut(s) 334, 520, 858
Hpy188III TCNNGA 9 cut(s) 34, 167, 526, 618, 723, 753, 777, 783, 789
Hpy8I GTNNAC 4 cut(s) 254, 311, 356, 466
Hpy99I CGWCG 1 cut(s) 405
HpyAV CCTTC 1 cut(s) 819
HpyCH4III ACNGT 2 cut(s) 635, 921
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 3 cut(s) 143, 182, 497
HpyF10VI GCNNNNNNNGC 8 cut(s) 15, 127, 170, 179, 198, 636, 814, 873
HpySE526I ACGT 1 cut(s) 313
Hsp92II CATG 4 cut(s) 245, 378, 400, 490
HspAI GCGC 4 cut(s) 239, 328, 817, 865
KspI CCGCGG 1 cut(s) 190
LmnI GCTCC 7 cut(s) 335, 663, 675, 773, 891, 897, 903
LweI GCATC 4 cut(s) 151, 160, 169, 559
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 915
MbiI CCGCTC 2 cut(s) 708, 750
MflI RGATCY 3 cut(s) 382, 719, 797
MhlI GDGCHC 2 cut(s) 123, 596
MlyI GAGTC 1 cut(s) 575
MnlI CCTC 8 cut(s) 50, 58, 122, 141, 219, 299, 373, 614
Mph1103I ATGCAT 1 cut(s) 145
MseI TTAA 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 189
MspCI CTTAAG 1 cut(s) 386
MspI CCGG 4 cut(s) 45, 541, 597, 661
MspR9I CCNGG 5 cut(s) 45, 135, 541, 597, 714
Mva1269I GAATGC 1 cut(s) 535
MvaI CCWGG 2 cut(s) 135, 714
MvnI CGCG 2 cut(s) 57, 189
MwoI GCNNNNNNNGC 8 cut(s) 15, 127, 170, 179, 198, 636, 814, 873
NciI CCSGG 3 cut(s) 45, 541, 597
NlaIII CATG 4 cut(s) 245, 378, 400, 490
NlaIV GGNNCC 2 cut(s) 38, 120
NmuCI GTSAC 1 cut(s) 915
NsbI TGCGCA 1 cut(s) 240
NsiI ATGCAT 1 cut(s) 145
NspI RCATGY 1 cut(s) 400
PceI AGGCCT 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 310
PctI GAATGC 1 cut(s) 535
PkrI GCNGC 2 cut(s) 191, 707
PleI GAGTC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 575
Psp6I CCWGG 2 cut(s) 133, 712
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 2 cut(s) 133, 712
PspN4I GGNNCC 2 cut(s) 38, 120
PsuI RGATCY 3 cut(s) 382, 719, 797
SacII CCGCGG 1 cut(s) 190
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 2 cut(s) 190, 706
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 5 cut(s) 45, 135, 541, 597, 714
SduI GDGCHC 2 cut(s) 123, 596
SfaNI GCATC 4 cut(s) 151, 160, 169, 559
SfcI CTRYAG 1 cut(s) 631
Sfr303I CCGCGG 1 cut(s) 190
SgrBI CCGCGG 1 cut(s) 190
SmlI CTYRAG 3 cut(s) 113, 223, 386
SmoI CTYRAG 3 cut(s) 113, 223, 386
SseBI AGGCCT 1 cut(s) 130
SsiI CCGC 5 cut(s) 187, 189, 577, 706, 748
SspMI CTAG 1 cut(s) 324
StuI AGGCCT 1 cut(s) 130
StyD4I CCNGG 5 cut(s) 43, 133, 539, 595, 712
StyI CCWWGG 1 cut(s) 125
TaaI ACNGT 2 cut(s) 635, 921
TaiI ACGT 1 cut(s) 316
TaqI TCGA 3 cut(s) 304, 607, 724
TauI GCSGC 2 cut(s) 192, 708
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 3 cut(s) 358, 810, 874
TseFI GTSAC 1 cut(s) 915
Tsp45I GTSAC 1 cut(s) 915
TspDTI ATGAA 3 cut(s) 363, 495, 503
TspGWI ACGGA 1 cut(s) 425
TspRI CASTG 3 cut(s) 358, 810, 874
Vha464I CTTAAG 1 cut(s) 386
XceI RCATGY 1 cut(s) 400
XspI CTAG 1 cut(s) 324
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.