pycom15g08390

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
5261458 .. 5262461
1004 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g08390.3

Sequence Viewer

Length: 396 bp
ATGTCGTGGCAGCAGTACGTCGACGACCACTTGATGTGCGATATCGACGGCAACAGCCTTACCACCGCCGCTATCCTCGGCCAAGACGGCAGCGTTTGGGCTCAGAGCGCTACTTTCCCTGCGTTTAAGCCTGAGGAGATTGCTGCAATTCTGAAAGATTTCGACCAACCCGGAACGCTTGCCCCAACCGGATTATTCCTTGGTGGGACCAAGTATATGGTGATCCAAGGTGAACCCGGCGCTGTCATTCGAGGAAAGAAGGGTTCGGGTGGAATTACCATTAAGAAGACCAGCCAGGCCCTGTTAATCGGTATATACGATGAGCCTTTGACTCCTGGGCAGTGCAACATAGTTGTGGAGAGGCTGGGCGATTACCTTATCGAGCAGGGTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

132

Amino Acids

13.99

Weight (kDa)

4.53

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 21
AciI CCGC 2 cut(s) 66, 69
AclWI GGATC 1 cut(s) 217
AcoI YGGCCR 1 cut(s) 79
AfaI GTAC 1 cut(s) 17
AfeI AGCGCT 1 cut(s) 109
AjnI CCWGG 2 cut(s) 294, 334
AlwI GGATC 1 cut(s) 217
AlwNI CAGNNNCTG 1 cut(s) 301
Aor51HI AGCGCT 1 cut(s) 109
AoxI GGCC 2 cut(s) 79, 297
ApeKI GCWGC 3 cut(s) 10, 90, 143
Asp700I GAANNNNTTC 1 cut(s) 158
AspLEI GCGC 2 cut(s) 110, 242
AspS9I GGNCC 2 cut(s) 207, 298
AsuC2I CCSGG 2 cut(s) 171, 237
AsuHPI GGTGA 2 cut(s) 232, 242
AvaII GGWCC 1 cut(s) 207
AxyI CCTNAGG 1 cut(s) 132
BanII GRGCYC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 293
BbvI GCAGC 3 cut(s) 22, 102, 130
BceAI ACGGC 2 cut(s) 64, 103
BciT130I CCWGG 2 cut(s) 296, 336
BcnI CCSGG 2 cut(s) 171, 237
BfoI RGCGCY 2 cut(s) 111, 243
BglI GCCNNNNNGGC 1 cut(s) 87
BisI GCNGC 4 cut(s) 11, 69, 91, 144
BlsI GCNGC 4 cut(s) 12, 70, 92, 145
Bme1390I CCNGG 4 cut(s) 171, 237, 296, 336
Bme18I GGWCC 1 cut(s) 207
BmgT120I GGNCC 2 cut(s) 207, 298
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 4 cut(s) 171, 237, 296, 336
BpiI GAAGAC 1 cut(s) 293
BpuMI CCSGG 2 cut(s) 171, 237
BsaJI CCNNGG 4 cut(s) 76, 199, 226, 335
BsaWI WCCGGW 1 cut(s) 188
Bse21I CCTNAGG 1 cut(s) 132
BseBI CCWGG 2 cut(s) 296, 336
BseDI CCNNGG 4 cut(s) 76, 199, 226, 335
BseMII CTCAG 2 cut(s) 116, 123
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 3 cut(s) 22, 102, 130
BseYI CCCAGC 1 cut(s) 364
BshFI GGCC 2 cut(s) 81, 299
BsiSI CCGG 3 cut(s) 171, 189, 237
BslFI GGGAC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 220
BsnI GGCC 2 cut(s) 81, 299
Bsp1286I GDGCHC 1 cut(s) 103
Bsp143I GATC 1 cut(s) 222
BspACI CCGC 2 cut(s) 66, 69
BspANI GGCC 2 cut(s) 81, 299
BspCNI CTCAG 2 cut(s) 115, 124
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 1 cut(s) 217
BssECI CCNNGG 4 cut(s) 76, 199, 226, 335
BssMI GATC 1 cut(s) 222
BssT1I CCWWGG 2 cut(s) 199, 226
Bst2UI CCWGG 2 cut(s) 296, 336
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 102, 132
BstH2I RGCGCY 2 cut(s) 111, 243
BstHHI GCGC 2 cut(s) 110, 242
BstKTI GATC 1 cut(s) 225
BstMBI GATC 1 cut(s) 222
BstMWI GCNNNNNNNGC 2 cut(s) 87, 107
BstNI CCWGG 2 cut(s) 296, 336
BstSCI CCNGG 4 cut(s) 169, 235, 294, 334
BstV1I GCAGC 3 cut(s) 22, 102, 130
BstV2I GAAGAC 1 cut(s) 293
BstXI CCANNNNNNTGG 1 cut(s) 217
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 2 cut(s) 81, 299
BtsI GCAGTG 1 cut(s) 347
BtsIMutI CAGTG 1 cut(s) 347
Cac8I GCNNGC 1 cut(s) 180
CaiI CAGNNNCTG 1 cut(s) 301
CfoI GCGC 2 cut(s) 110, 242
Cfr13I GGNCC 2 cut(s) 207, 298
Csp6I GTAC 1 cut(s) 16
CviJI RGCY 8 cut(s) 57, 81, 101, 130, 294, 299, 325, 364
CviKI_1 RGCY 8 cut(s) 57, 81, 101, 130, 294, 299, 325, 364
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 2 cut(s) 102, 132
DpnI GATC 1 cut(s) 224
DpnII GATC 1 cut(s) 222
EaeI YGGCCR 1 cut(s) 79
Eco130I CCWWGG 2 cut(s) 199, 226
Eco24I GRGCYC 1 cut(s) 103
Eco32I GATATC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 207
Eco47III AGCGCT 1 cut(s) 109
Eco81I CCTNAGG 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 298
EcoRII CCWGG 2 cut(s) 294, 334
EcoRV GATATC 1 cut(s) 43
EcoT14I CCWWGG 2 cut(s) 199, 226
EcoT38I GRGCYC 1 cut(s) 103
ErhI CCWWGG 2 cut(s) 199, 226
FaiI YATR 5 cut(s) 216, 218, 314, 316, 350
FaqI GGGAC 1 cut(s) 220
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 4 cut(s) 11, 69, 91, 144
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 4 cut(s) 11, 69, 91, 144
GlaI GCGC 2 cut(s) 109, 241
GluI GCNGC 4 cut(s) 11, 69, 91, 144
GsaI CCCAGC 1 cut(s) 368
HaeII RGCGCY 2 cut(s) 111, 243
HaeIII GGCC 2 cut(s) 81, 299
HapII CCGG 3 cut(s) 171, 189, 237
HhaI GCGC 2 cut(s) 110, 242
Hin6I GCGC 2 cut(s) 108, 240
HinP1I GCGC 2 cut(s) 108, 240
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 1 cut(s) 331
HpaII CCGG 3 cut(s) 171, 189, 237
HphI GGTGA 2 cut(s) 232, 242
Hpy166II GTNNAC 2 cut(s) 22, 233
Hpy188I TCNGA 2 cut(s) 105, 153
Hpy8I GTNNAC 2 cut(s) 22, 233
Hpy99I CGWCG 3 cut(s) 23, 26, 50
HpyAV CCTTC 1 cut(s) 253
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 146, 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 107
HpyF3I CTNAG 2 cut(s) 102, 132
HpySE526I ACGT 1 cut(s) 18
HspAI GCGC 2 cut(s) 108, 240
Kzo9I GATC 1 cut(s) 222
Lsp1109I GCAGC 3 cut(s) 22, 102, 130
MaeII ACGT 1 cut(s) 18
MalI GATC 1 cut(s) 224
MboI GATC 1 cut(s) 222
MboII GAAGA 1 cut(s) 298
MhlI GDGCHC 1 cut(s) 103
MluCI AATT 2 cut(s) 147, 273
MlyI GAGTC 1 cut(s) 325
MnlI CCTC 4 cut(s) 86, 127, 245, 354
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 3 cut(s) 126, 282, 305
MslI CAYNNNNRTG 1 cut(s) 353
MspI CCGG 3 cut(s) 171, 189, 237
MspR9I CCNGG 4 cut(s) 171, 237, 296, 336
MvaI CCWGG 2 cut(s) 296, 336
MwoI GCNNNNNNNGC 2 cut(s) 87, 107
NciI CCSGG 2 cut(s) 171, 237
NdeII GATC 1 cut(s) 222
NlaIV GGNNCC 1 cut(s) 208
NmeAIII GCCGAG 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 158
PkrI GCNGC 4 cut(s) 12, 70, 92, 145
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
Psp6I CCWGG 2 cut(s) 294, 334
PspFI CCCAGC 1 cut(s) 364
PspGI CCWGG 2 cut(s) 294, 334
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 2 cut(s) 207, 298
PstNI CAGNNNCTG 1 cut(s) 301
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
RseI CAYNNNNRTG 1 cut(s) 353
SalI GTCGAC 1 cut(s) 20
SaqAI TTAA 3 cut(s) 126, 282, 305
SatI GCNGC 4 cut(s) 11, 69, 91, 144
Sau3AI GATC 1 cut(s) 222
Sau96I GGNCC 2 cut(s) 207, 298
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 4 cut(s) 171, 237, 296, 336
SduI GDGCHC 1 cut(s) 103
SetI ASST 3 cut(s) 21, 232, 378
SgrDI CGTCGACG 1 cut(s) 20
SinI GGWCC 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 353
Sse9I AATT 2 cut(s) 147, 273
SsiI CCGC 2 cut(s) 66, 69
StyD4I CCNGG 4 cut(s) 169, 235, 294, 334
StyI CCWWGG 2 cut(s) 199, 226
TaiI ACGT 1 cut(s) 21
TaqI TCGA 5 cut(s) 21, 45, 162, 250, 381
TasI AATT 2 cut(s) 147, 273
TauI GCSGC 1 cut(s) 71
Tru1I TTAA 3 cut(s) 126, 282, 305
Tru9I TTAA 3 cut(s) 126, 282, 305
TscAI CASTG 1 cut(s) 347
TseI GCWGC 3 cut(s) 10, 90, 143
TspRI CASTG 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 207
XmiI GTMKAC 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.