Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0000848

Physical Location & Seq

Genomic Coordinates Forward (+)

10004004 .. 10006328

Gene Structure 2325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g11810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCGTGGCAGGCGTACGTCGACGATCACTTGATGTGCGACATCGACGGCCACCATCTGACCGCCGCGGCCATCCTCGGCCACGACGGTAGTGTGTGGGCCCAGAGCTCCACCTTCCCCAAGTTTAAGCCGGAAGAGATTACGGCGATAATGAAAGATTTTGATGAGCCAGGGTCTCTTGCCCCAACTGGATTACACCTTGGTGGGACAAAGTACATGGTTATTCAGGGCGAGGGTGGAGCTGTGATTCGTGGCAAGAAGGGCTCTGGTGGCGTAACTGTGAAGAAAACCAGCCAAGCTCTGGTTTTCGGTATATACGAGGAGCCCTTGACTCCAGGACAATGTAATATGATTGTGGAGAGGTTGGGAGACTACCTGATTGATCAAGGCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132

Pfam Domains

Protein Families

Profilin

Protein Analysis

132

Amino Acids

14.06

Weight (kDa)

5.19

Isoelectric Point (pI)

31.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Profilin	PF00235	1 - 131	4.3e-45	Profilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19770 AT4G29340
fragaria_vesca	FvH4_1g06470 FvH4_2g26231 FvH4_2g35200 FvH4_6g32550
malus_domestica	MD02G1068000.v1.1 MD08G1109600.v1.1 MD09G1201100.v1.1 MD09G1201400.v1.1 MD15G1089500.v1.1 MD15G1199600.v1.1
prunus_persica	Prupe.1G444100_v2.0.a1 Prupe.1G444100_v2.0.a1 Prupe.1G444100_v2.0.a1 Prupe.1G504400_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.7G217600_v2.0.a1 Prupe.7G217600_v2.0.a1
pyrus_communis	pycom02g05380 pycom09g11810 pycom15g08390 pycom15g17710
rosa_chinensis	RchiOBHm_Chr1g0361111 RchiOBHm_Chr2g0092221 RchiOBHm_Chr2g0140921 RchiOBHm_Chr6g0294811 RchiOBHm_Chr6g0306741
rosa_laevigata	RLG00000010769 RLG00000011838 RLG00000016287 RLG00000019902
rosa_multiflora	Rmu_co8510555.1_g000001 Rmu_sc0000524.1_g000025 Rmu_sc0001331.1_g000001 Rmu_sc0003848.1_g000011 Rmu_sc0017785.1_g000002 Rmu_sc0017786.1_g000002
rosa_roxburghii	Rroxscaffold_2G00104380 Rroxscaffold_2G00149360 Rroxscaffold_7G00161500 Rroxscaffold_7G00172990
rosa_rugosa	Rorug01G0285600 Rorug02G0023800 Rorug02G0365700 Rorug06G0247000 Rorug06G0352300
rosa_samantha	Rh2AG069500 Rh2AG069600 Rh2AG417100 Rh2BG069100 Rh2BG427000 Rh2CG070200 Rh2CG070300 Rh2CG403400 Rh6AG360600 Rh6AG464400 Rh6CG374300 Rh6CG478700 Rh6DG360800 Rh6DG465800
rosa_wichuraiana	Rw2G006260 Rw2G034130 Rw6G031460 Rw6G040470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	301
AccI	GTMKAC	1 cut(s)	21
AccII	CGCG	1 cut(s)	68
AciI	CCGC	3 cut(s)	63, 66, 68
AcoI	YGGCCR	3 cut(s)	49, 69, 79
AfaI	GTAC	2 cut(s)	17, 215
AfiI	CCNNNNNNNGG	1 cut(s)	301
AjnI	CCWGG	2 cut(s)	169, 334
AleI	CACNNNNGTG	1 cut(s)	201
AluBI	AGCT	3 cut(s)	108, 242, 299
AluI	AGCT	3 cut(s)	108, 242, 299
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	2 cut(s)	180, 363
AoxI	GGCC	5 cut(s)	49, 69, 79, 99, 388
ApaI	GGGCCC	1 cut(s)	103
AspS9I	GGNCC	2 cut(s)	99, 100
BaeGI	GKGCMC	1 cut(s)	103
BanII	GRGCYC	4 cut(s)	103, 110, 266, 327
Bbv12I	GWGCWC	1 cut(s)	110
BccI	CCATC	2 cut(s)	63, 80
BceAI	ACGGC	2 cut(s)	64, 159
BciT130I	CCWGG	2 cut(s)	171, 336
BclI	TGATCA	1 cut(s)	382
BcoDI	GTCTC	2 cut(s)	180, 363
BisI	GCNGC	2 cut(s)	66, 69
BlsI	GCNGC	2 cut(s)	67, 70
Bme1390I	CCNGG	2 cut(s)	171, 336
BmgT120I	GGNCC	2 cut(s)	99, 100
BmiI	GGNNCC	2 cut(s)	101, 324
BmrFI	CCNGG	2 cut(s)	171, 336
BpmI	CTGGAG	1 cut(s)	318
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	4 cut(s)	66, 76, 170, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	193
BseBI	CCWGG	2 cut(s)	171, 336
BseDI	CCNNGG	4 cut(s)	66, 76, 170, 199
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	335
BseSI	GKGCMC	1 cut(s)	103
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	5 cut(s)	51, 71, 81, 101, 390
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	131
BsiWI	CGTACG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	2 cut(s)	180, 363
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	5 cut(s)	51, 71, 81, 101, 390
Bso31I	GGTCTC	1 cut(s)	180
Bsp120I	GGGCCC	1 cut(s)	99
Bsp1286I	GDGCHC	4 cut(s)	103, 110, 266, 327
Bsp143I	GATC	2 cut(s)	25, 382
BspACI	CCGC	3 cut(s)	63, 66, 68
BspANI	GGCC	5 cut(s)	51, 71, 81, 101, 390
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	2 cut(s)	101, 324
BspTNI	GGTCTC	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	4 cut(s)	66, 76, 170, 199
BssMI	GATC	2 cut(s)	25, 382
BssT1I	CCWWGG	1 cut(s)	199
Bst2UI	CCWGG	2 cut(s)	171, 336
Bst4CI	ACNGT	2 cut(s)	89, 280
Bst6I	CTCTTC	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	12
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	1 cut(s)	68
BstKTI	GATC	2 cut(s)	28, 385
BstMAI	GTCTC	2 cut(s)	180, 363
BstMBI	GATC	2 cut(s)	25, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	261, 270
BstNI	CCWGG	2 cut(s)	171, 336
BstSCI	CCNGG	2 cut(s)	169, 334
BstSLI	GKGCMC	1 cut(s)	103
BstUI	CGCG	1 cut(s)	68
BsuRI	GGCC	5 cut(s)	51, 71, 81, 101, 390
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	12
Cfr13I	GGNCC	2 cut(s)	99, 100
Cfr42I	CCGCGG	1 cut(s)	69
Csp6I	GTAC	2 cut(s)	16, 214
CviAII	CATG	1 cut(s)	217
CviQI	GTAC	2 cut(s)	16, 214
DpnI	GATC	2 cut(s)	27, 384
DpnII	GATC	2 cut(s)	25, 382
EaeI	YGGCCR	3 cut(s)	49, 69, 79
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Ecl136II	GAGCTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	199
Eco147I	AGGCCT	1 cut(s)	390
Eco24I	GRGCYC	4 cut(s)	103, 110, 266, 327
Eco31I	GGTCTC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	108
EcoRII	CCWGG	2 cut(s)	169, 334
EcoT14I	CCWWGG	1 cut(s)	199
EcoT38I	GRGCYC	4 cut(s)	103, 110, 266, 327
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	1 cut(s)	220
FaiI	YATR	5 cut(s)	218, 314, 316, 350, 394
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	1 cut(s)	216
FbaI	TGATCA	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	2 cut(s)	66, 69
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	4 cut(s)	103, 110, 266, 327
Fsp4HI	GCNGC	2 cut(s)	66, 69
GluI	GCNGC	2 cut(s)	66, 69
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	5 cut(s)	51, 71, 81, 101, 390
HapII	CCGG	1 cut(s)	131
Hin1II	CATG	1 cut(s)	220
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	2 cut(s)	247, 331
HpaII	CCGG	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	1 cut(s)	60
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	4 cut(s)	23, 26, 50, 89
HpyAV	CCTTC	2 cut(s)	124, 253
HpyCH4III	ACNGT	2 cut(s)	89, 280
HpyCH4IV	ACGT	1 cut(s)	18
HpyF10VI	GCNNNNNNNGC	2 cut(s)	261, 270
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	382
KspI	CCGCGG	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	25, 382
LmnI	GCTCC	3 cut(s)	113, 239, 322
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	2 cut(s)	27, 384
MboI	GATC	2 cut(s)	25, 382
MboII	GAAGA	2 cut(s)	146, 295
MhlI	GDGCHC	4 cut(s)	103, 110, 266, 327
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	4 cut(s)	86, 226, 313, 354
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	2 cut(s)	171, 336
MvaI	CCWGG	2 cut(s)	171, 336
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	261, 270
NdeII	GATC	2 cut(s)	25, 382
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	2 cut(s)	101, 324
NmeAIII	GCCGAG	1 cut(s)	57
OliI	CACNNNNGTG	1 cut(s)	201
PceI	AGGCCT	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 315
PfeI	GAWTC	1 cut(s)	247
Pfl23II	CGTACG	1 cut(s)	15
PflMI	CCANNNNNTGG	1 cut(s)	301
PfoI	TCCNGGA	1 cut(s)	334
PkrI	GCNGC	2 cut(s)	67, 70
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Psp124BI	GAGCTC	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	169, 334
PspGI	CCWGG	2 cut(s)	169, 334
PspLI	CGTACG	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	101, 324
PspOMI	GGGCCC	1 cut(s)	99
PspPI	GGNCC	2 cut(s)	99, 100
RsaI	GTAC	2 cut(s)	17, 215
RsaNI	GTAC	2 cut(s)	16, 214
RseI	CAYNNNNRTG	1 cut(s)	201
SacI	GAGCTC	1 cut(s)	110
SacII	CCGCGG	1 cut(s)	69
SalI	GTCGAC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	2 cut(s)	66, 69
Sau3AI	GATC	2 cut(s)	25, 382
Sau96I	GGNCC	2 cut(s)	99, 100
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	171, 336
SduI	GDGCHC	4 cut(s)	103, 110, 266, 327
SetI	ASST	8 cut(s)	21, 110, 116, 201, 244, 301, 365, 378
Sfr303I	CCGCGG	1 cut(s)	69
SgrBI	CCGCGG	1 cut(s)	69
SgrDI	CGTCGACG	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	201
SseBI	AGGCCT	1 cut(s)	390
SsiI	CCGC	3 cut(s)	63, 66, 68
SstI	GAGCTC	1 cut(s)	110
StuI	AGGCCT	1 cut(s)	390
StyD4I	CCNGG	2 cut(s)	169, 334
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	2 cut(s)	89, 280
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	21, 45
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	2 cut(s)	68, 71
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TspDTI	ATGAA	1 cut(s)	167
Van91I	CCANNNNNTGG	1 cut(s)	301
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.