Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000848

Physical Location & Seq

Genomic Coordinates Reverse (-)

5725357 .. 5727093

Gene Structure 1737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG069500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTCGTGGCAAACTTACGTCGATGACCACCTGATGTGCGAAATCGAAGGCAACCACCTCTCCGCCGCCGCCATCATCGGCCAAGACGGCAGCGTTTGGGCCCAGAGCGCCACCTTCCCTCAGTTGAAGCCTGAAGAAGTTACTGGCATTGTGAATGACTTTAATGAACCTGGAACACTTGCTCCAACTGGGTTGTATCTTGGAGGCACTAAGTACATGGTGATCCAAGGGGAGCCTGGAGCTGTCATTAGAGGGAAGAAGGTAGCTGAATCTGATTCATTCTTGTTTCAAAACCCAATTCATGGTTTTGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0008064 GO:0008092 GO:0008104 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032507 GO:0032535 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0042989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051235 GO:0051493 GO:0051494 GO:0051641 GO:0051651 GO:0065007 GO:0065008 GO:0070727 GO:0071840 GO:0071944 GO:0090066 GO:0099568 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132

Pfam Domains

Protein Families

Profilin

Protein Analysis

105

Amino Acids

11.32

Weight (kDa)

4.59

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Profilin	PF00235	1 - 89	3.7e-25	Profilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19770 AT4G29340
fragaria_vesca	FvH4_1g06470 FvH4_2g26231 FvH4_2g35200 FvH4_6g32550
malus_domestica	MD02G1068000.v1.1 MD08G1109600.v1.1 MD09G1201100.v1.1 MD09G1201400.v1.1 MD15G1089500.v1.1 MD15G1199600.v1.1
prunus_persica	Prupe.1G444100_v2.0.a1 Prupe.1G444100_v2.0.a1 Prupe.1G444100_v2.0.a1 Prupe.1G504400_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.7G217600_v2.0.a1 Prupe.7G217600_v2.0.a1
pyrus_communis	pycom02g05380 pycom09g11810 pycom15g08390 pycom15g17710
rosa_chinensis	RchiOBHm_Chr1g0361111 RchiOBHm_Chr2g0092221 RchiOBHm_Chr2g0140921 RchiOBHm_Chr6g0294811 RchiOBHm_Chr6g0306741
rosa_laevigata	RLG00000010769 RLG00000011838 RLG00000016287 RLG00000019902
rosa_multiflora	Rmu_co8510555.1_g000001 Rmu_sc0000524.1_g000025 Rmu_sc0001331.1_g000001 Rmu_sc0003848.1_g000011 Rmu_sc0017785.1_g000002 Rmu_sc0017786.1_g000002
rosa_roxburghii	Rroxscaffold_2G00104380 Rroxscaffold_2G00149360 Rroxscaffold_7G00161500 Rroxscaffold_7G00172990
rosa_rugosa	Rorug01G0285600 Rorug02G0023800 Rorug02G0365700 Rorug06G0247000 Rorug06G0352300
rosa_samantha	Rh2AG069500 Rh2AG069600 Rh2AG417100 Rh2BG069100 Rh2BG427000 Rh2CG070200 Rh2CG070300 Rh2CG403400 Rh6AG360600 Rh6AG464400 Rh6CG374300 Rh6CG478700 Rh6DG360800 Rh6DG465800
rosa_wichuraiana	Rw2G006260 Rw2G034130 Rw6G031460 Rw6G040470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	302
AciI	CCGC	3 cut(s)	63, 66, 69
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	127, 290
AjnI	CCWGG	2 cut(s)	169, 235
AloI	GAACNNNNNNTCC	2 cut(s)	166, 198
AluBI	AGCT	2 cut(s)	242, 266
AluI	AGCT	2 cut(s)	242, 266
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	2 cut(s)	79, 99
ApaI	GGGCCC	1 cut(s)	103
ApeKI	GCWGC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	99, 100
AsuHPI	GGTGA	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	2 cut(s)	171, 237
BfoI	RGCGCY	1 cut(s)	111
BglI	GCCNNNNNGGC	1 cut(s)	87
BisI	GCNGC	3 cut(s)	66, 69, 91
BlsI	GCNGC	3 cut(s)	67, 70, 92
Bme1390I	CCNGG	2 cut(s)	171, 237
BmgT120I	GGNCC	2 cut(s)	99, 100
BmiI	GGNNCC	2 cut(s)	101, 234
BmrFI	CCNGG	2 cut(s)	171, 237
BmrI	ACTGGG	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	226
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 166, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	2 cut(s)	148, 193
BseBI	CCWGG	2 cut(s)	171, 237
BseDI	CCNNGG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	2 cut(s)	148, 193
BseSI	GKGCMC	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	102
BshFI	GGCC	2 cut(s)	81, 101
BslI	CCNNNNNNNGG	1 cut(s)	302
BsnI	GGCC	2 cut(s)	81, 101
Bsp120I	GGGCCC	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	222
BspACI	CCGC	3 cut(s)	63, 66, 69
BspANI	GGCC	2 cut(s)	81, 101
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	101, 234
BspPI	GGATC	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	148, 193
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	2 cut(s)	171, 237
BstDEI	CTNAG	2 cut(s)	120, 210
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 107
BstNI	CCWGG	2 cut(s)	171, 237
BstSCI	CCNGG	2 cut(s)	169, 235
BstSLI	GKGCMC	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	81, 101
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	99, 100
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	2 cut(s)	217, 302
CviJI	RGCY	6 cut(s)	81, 101, 130, 235, 242, 266
CviKI_1	RGCY	6 cut(s)	81, 101, 130, 235, 242, 266
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	2 cut(s)	120, 210
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
EaeI	YGGCCR	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	169, 235
EcoT14I	CCWWGG	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	2 cut(s)	220, 305
FaiI	YATR	2 cut(s)	218, 303
FatI	CATG	2 cut(s)	216, 301
Fnu4HI	GCNGC	3 cut(s)	66, 69, 91
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	3 cut(s)	66, 69, 91
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	3 cut(s)	66, 69, 91
GsuI	CTGGAG	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	81, 101
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	2 cut(s)	220, 305
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	2 cut(s)	269, 275
HphI	GGTGA	1 cut(s)	232
Hpy188I	TCNGA	1 cut(s)	274
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	3 cut(s)	41, 124, 253
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 107
HpyF3I	CTNAG	2 cut(s)	120, 210
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	220, 305
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	3 cut(s)	187, 232, 239
LpnPI	CCDG	9 cut(s)	44, 116, 129, 144, 156, 174, 183, 222, 249
Lsp1109I	GCAGC	1 cut(s)	102
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	2 cut(s)	146, 268
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	1 cut(s)	297
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	4 cut(s)	68, 129, 197, 245
MseI	TTAA	1 cut(s)	162
MspR9I	CCNGG	2 cut(s)	171, 237
MvaI	CCWGG	2 cut(s)	171, 237
MwoI	GCNNNNNNNGC	2 cut(s)	87, 107
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	2 cut(s)	220, 305
NlaIV	GGNNCC	2 cut(s)	101, 234
PfeI	GAWTC	2 cut(s)	269, 275
PflMI	CCANNNNNTGG	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	67, 70, 92
Psp6I	CCWGG	2 cut(s)	169, 235
PspGI	CCWGG	2 cut(s)	169, 235
PspN4I	GGNNCC	2 cut(s)	101, 234
PspOMI	GGGCCC	1 cut(s)	99
PspPI	GGNCC	2 cut(s)	99, 100
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	3 cut(s)	66, 69, 91
Sau3AI	GATC	1 cut(s)	222
Sau96I	GGNCC	2 cut(s)	99, 100
ScrFI	CCNGG	2 cut(s)	171, 237
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	8 cut(s)	21, 33, 60, 116, 172, 244, 264, 268
Sse9I	AATT	1 cut(s)	297
SsiI	CCGC	3 cut(s)	63, 66, 69
StyD4I	CCNGG	2 cut(s)	169, 235
StyI	CCWWGG	1 cut(s)	226
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	21, 45
TasI	AATT	1 cut(s)	297
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	2 cut(s)	68, 71
TfiI	GAWTC	2 cut(s)	269, 275
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseI	GCWGC	1 cut(s)	90
TspDTI	ATGAA	3 cut(s)	180, 267, 290
Van91I	CCANNNNNTGG	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.