Rh6AG360600

Profilin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000848
Physical Location & Seq
Forward (+)
55930575 .. 55932518
1944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG360600.1

Sequence Viewer

Length: 288 bp
ATGTCGTGGCAGGCGTACGTGGATGATCACTTGATGTGCAACGTCGACGGCCACCACCTGACCGCCGCGGCCATCGTCGGTCAAGACGGTAGTGTGTGGGCTCAGAGTTCAAGCTTCCCTCAGTTCAAGCCGGAAGAAGTTGCAGCGATAATGAAAGATTTCGATGAGCCAGGGTCTCTTGCCCCAACTGGATTGCACCTTGGTGGCACAAAGTACATGGTTATTCAGGGGGAGAGTGGAGCCGTAATTCGTGGAAAGAAGGTTTGTTCATTTGCTTTCATCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132
Pfam Domains
Protein Families
Profilin

Protein Analysis

95

Amino Acids

10.2

Weight (kDa)

5.34

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Profilin PF00235 1 - 88 3.2e-26 Profilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 45
AccII CGCG 1 cut(s) 68
AciI CCGC 3 cut(s) 63, 66, 68
AcoI YGGCCR 2 cut(s) 49, 69
AfaI GTAC 2 cut(s) 17, 215
AgsI TTSAA 2 cut(s) 111, 127
AjnI CCWGG 1 cut(s) 169
AleI CACNNNNGTG 1 cut(s) 201
AluBI AGCT 1 cut(s) 114
AluI AGCT 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 180
AoxI GGCC 2 cut(s) 49, 69
ApeKI GCWGC 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 103
BbvI GCAGC 1 cut(s) 155
BccI CCATC 1 cut(s) 80
BceAI ACGGC 2 cut(s) 64, 227
BciT130I CCWGG 1 cut(s) 171
BclI TGATCA 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 180
BisI GCNGC 3 cut(s) 66, 69, 144
BlsI GCNGC 3 cut(s) 67, 70, 145
Bme1390I CCNGG 1 cut(s) 171
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 3 cut(s) 66, 170, 199
Bse1I ACTGG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 3 cut(s) 66, 170, 199
BseGI GGATG 2 cut(s) 28, 279
BseMII CTCAG 2 cut(s) 116, 134
BseNI ACTGG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 2 cut(s) 51, 71
BsiSI CCGG 1 cut(s) 131
BsiWI CGTACG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 180
BsnI GGCC 2 cut(s) 51, 71
Bso31I GGTCTC 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 103
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 3 cut(s) 63, 66, 68
BspANI GGCC 2 cut(s) 51, 71
BspCNI CTCAG 2 cut(s) 115, 133
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 241
BspTNI GGTCTC 1 cut(s) 180
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 3 cut(s) 66, 170, 199
BssMI GATC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 102, 120
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 28, 279
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 155
BsuRI GGCC 2 cut(s) 51, 71
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 2 cut(s) 28, 279
Cac8I GCNNGC 1 cut(s) 12
Cfr42I CCGCGG 1 cut(s) 69
Csp6I GTAC 2 cut(s) 16, 214
CviAII CATG 1 cut(s) 217
CviJI RGCY 7 cut(s) 51, 71, 101, 114, 130, 169, 242
CviKI_1 RGCY 7 cut(s) 51, 71, 101, 114, 130, 169, 242
CviQI GTAC 2 cut(s) 16, 214
DdeI CTNAG 2 cut(s) 102, 120
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
EaeI YGGCCR 2 cut(s) 49, 69
Eco130I CCWWGG 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 103
Eco31I GGTCTC 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 1 cut(s) 220
FaiI YATR 1 cut(s) 218
FatI CATG 1 cut(s) 216
FbaI TGATCA 1 cut(s) 25
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 3 cut(s) 66, 69, 144
FokI GGATG 2 cut(s) 35, 266
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 3 cut(s) 66, 69, 144
GluI GCNGC 3 cut(s) 66, 69, 144
HaeIII GGCC 2 cut(s) 51, 71
HapII CCGG 1 cut(s) 131
Hin1II CATG 1 cut(s) 220
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 112
HpaII CCGG 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 46
Hpy99I CGWCG 3 cut(s) 47, 50, 80
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4IV ACGT 2 cut(s) 18, 42
HpyCH4V TGCA 3 cut(s) 39, 143, 196
HpyF3I CTNAG 2 cut(s) 102, 120
HpySE526I ACGT 2 cut(s) 18, 42
Hsp92II CATG 1 cut(s) 220
Ksp22I TGATCA 1 cut(s) 25
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 6 cut(s) 71, 144, 156, 174, 183, 212
Lsp1109I GCAGC 1 cut(s) 155
MaeII ACGT 2 cut(s) 18, 42
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 1 cut(s) 146
MhlI GDGCHC 1 cut(s) 103
MluCI AATT 1 cut(s) 246
MnlI CCTC 1 cut(s) 129
MroXI GAANNNNTTC 1 cut(s) 158
MslI CAYNNNNRTG 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MvnI CGCG 1 cut(s) 68
NdeII GATC 1 cut(s) 25
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 1 cut(s) 241
OliI CACNNNNGTG 1 cut(s) 201
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 158
Pfl23II CGTACG 1 cut(s) 15
PkrI GCNGC 3 cut(s) 67, 70, 145
Ppu21I YACGTR 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspLI CGTACG 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 241
RsaI GTAC 2 cut(s) 17, 215
RsaNI GTAC 2 cut(s) 16, 214
RseI CAYNNNNRTG 1 cut(s) 201
SacII CCGCGG 1 cut(s) 69
SalI GTCGAC 1 cut(s) 44
SatI GCNGC 3 cut(s) 66, 69, 144
Sau3AI GATC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 103
SetI ASST 6 cut(s) 21, 45, 60, 116, 201, 264
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SgrDI CGTCGACG 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 201
Sse9I AATT 1 cut(s) 246
SsiI CCGC 3 cut(s) 63, 66, 68
StyD4I CCNGG 1 cut(s) 169
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 89
TaiI ACGT 2 cut(s) 21, 45
TaqI TCGA 2 cut(s) 45, 162
TaqII GACCGA 1 cut(s) 68
TasI AATT 1 cut(s) 246
TatI WGTACW 1 cut(s) 213
TauI GCSGC 2 cut(s) 68, 71
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 3 cut(s) 167, 258, 268
XmiI GTMKAC 1 cut(s) 45
XmnI GAANNNNTTC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.