Rorug06G0247000

Profilin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000848
Physical Location & Seq
Forward (+)
39347032 .. 39348418
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0247000.1

Sequence Viewer

Length: 1083 bp
ATGCACAATCCCGACCTCGATTTCCGACACCCCACTCCACCGCCACCGCCACCATTACCAACTCAACCCCACCACTACCCAAACGTCGTCGTTTCCCTCCCTACCGCCGTCCCTTTCGCTTCTTCATCTTCTACTTCCTTCAACTTCCCCGAGAGCAACAATGCCCCACAACCCCACCAGCAAAACCCTCGAAAGAAGCGCTCCAAACTGATGAGGCCCGACGCCGACAACCCGGCCAAGCGGCCCAAGTCCGCCAAGAAACCCGATCCGGGCGCCCCCAAGATCACCACGCCCTGCAGCGAGTGCGGCAGGAAGTTCTGGTCATGGAAGGCTCTCTTCGGCCACATGCGCTGCCACCCTGAACGCCACTGGCGAGGAATCCAACCTCCGCCGGATTTCCAACGAGCCGGTTCGCCGCCGAACCCGGTCCTTCCCGACTTGGAGCTCTCAATGAGCGAAGACGACCACGACGCCGCCTCTAGCTTGTTGATTCTTGCCAGCGGCACCGACCAAACTCAACTTCCTGGTACTAGTTCACAAGGCCTTCGAGAAAACGACTCCGGCGGCTGTCGTTTCGAGTGTTCCAGTTGCAAGAAAGTGTTCGGGTCCCACCAGGCCTTGGGAGGCCATAGGGCGAGCCACAAGAACGTGAAGGGTTGTTTCGCGATTACAAAGAGTGATGTGGAGGTGGAAGAGGAGCTTCATCATCATCATCATCTTCAGCATGGTAATGTAGTAATGGCTAGTCGTAGCTGTGGCGTTGATGATAGTAATGTTGATGATGTGATGGAGGAGAATAACAAGATGGTTATGGCGGTGGAGTCGGGGCACCAGTGTAGCATTTGCTGGAGGGTGTTTTCGAGTGGGCAAGCTTTGGGCGGGCACAAGAGGTGTCATTGGGAGAAAGGGGAAGAGGCGTCAGTGGTGATGACACAACTTGGGATCAACAACAACACTAATTCTGGTGGGCTGGACTTGAACTTGCCTGCTGCTGCTGCTGCTCCTGCTCCTGCCACTGAAGATGATCAGTCGTCTTCGTATACGTCGCCAGGCTTGGCTTTGGATTTGAGGTTGGGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132
Pfam Domains
Protein Families
Profilin

Protein Analysis

360

Amino Acids

39.11

Weight (kDa)

6.59

Isoelectric Point (pI)

61.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 97 - 121 2.3e-06 C2H2-type zinc finger
zf-C2H2_6 PF13912 191 - 215 7.6e-10 C2H2-type zinc finger
zf-C2H2_6 PF13912 277 - 301 1.6e-09 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 272, 503, 828
AccB7I CCANNNNNTGG 1 cut(s) 619
AccI GTMKAC 1 cut(s) 1040
AccII CGCG 1 cut(s) 665
AclWI GGATC 2 cut(s) 260, 950
AcoI YGGCCR 2 cut(s) 234, 340
AcuI CTGAAG 2 cut(s) 704, 1038
AcyI GRCGYC 4 cut(s) 222, 273, 471, 917
AfaI GTAC 1 cut(s) 529
AfeI AGCGCT 1 cut(s) 200
AfiI CCNNNNNNNGG 2 cut(s) 269, 619
AgsI TTSAA 2 cut(s) 142, 979
AhlI ACTAGT 1 cut(s) 530
AjnI CCWGG 3 cut(s) 523, 612, 1048
AjuI GAANNNNNNNTTGG 2 cut(s) 504, 536
AluBI AGCT 5 cut(s) 445, 483, 700, 753, 872
AluI AGCT 5 cut(s) 445, 483, 700, 753, 872
Alw21I GWGCWC 1 cut(s) 447
AlwI GGATC 2 cut(s) 260, 950
Ama87I CYCGRG 1 cut(s) 149
Aor51HI AGCGCT 1 cut(s) 200
AoxI GGCC 7 cut(s) 215, 234, 242, 340, 541, 615, 625
ApeKI GCWGC 6 cut(s) 297, 351, 989, 992, 995, 998
Asp700I GAANNNNTTC 1 cut(s) 599
AspLEI GCGC 3 cut(s) 201, 275, 351
AspS9I GGNCC 4 cut(s) 216, 243, 427, 606
AsuC2I CCSGG 3 cut(s) 233, 270, 425
AsuHPI GGTGA 2 cut(s) 277, 937
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 2 cut(s) 427, 606
BaeGI GKGCMC 2 cut(s) 831, 885
BanI GGYRCC 3 cut(s) 272, 503, 828
BanII GRGCYC 1 cut(s) 447
BbsI GAAGAC 2 cut(s) 465, 1026
Bbv12I GWGCWC 1 cut(s) 447
BbvI GCAGC 6 cut(s) 309, 338, 976, 979, 982, 985
BccI CCATC 2 cut(s) 781, 799
BceAI ACGGC 1 cut(s) 92
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciT130I CCWGG 3 cut(s) 525, 614, 1050
BclI TGATCA 1 cut(s) 1024
BcnI CCSGG 3 cut(s) 233, 270, 425
BcuI ACTAGT 1 cut(s) 530
BfaI CTAG 3 cut(s) 480, 531, 744
BfmI CTRYAG 1 cut(s) 295
BfoI RGCGCY 2 cut(s) 202, 276
Bme1390I CCNGG 6 cut(s) 233, 270, 425, 525, 614, 1050
Bme18I GGWCC 2 cut(s) 427, 606
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 4 cut(s) 216, 243, 427, 606
BmiI GGNNCC 5 cut(s) 274, 505, 607, 608, 830
BmrFI CCNGG 6 cut(s) 233, 270, 425, 525, 614, 1050
BpiI GAAGAC 2 cut(s) 465, 1026
BpmI CTGGAG 1 cut(s) 868
BpuMI CCSGG 3 cut(s) 233, 270, 425
BsaHI GRCGYC 4 cut(s) 222, 273, 471, 917
BsaJI CCNNGG 1 cut(s) 618
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 619
Bse118I RCCGGY 1 cut(s) 407
Bse1I ACTGG 3 cut(s) 374, 585, 832
BseBI CCWGG 3 cut(s) 525, 614, 1050
BseDI CCNNGG 1 cut(s) 618
BseLI CCNNNNNNNGG 2 cut(s) 269, 619
BseNI ACTGG 3 cut(s) 374, 585, 832
BseRI GAGGAG 2 cut(s) 710, 806
BseSI GKGCMC 2 cut(s) 831, 885
BseXI GCAGC 6 cut(s) 309, 338, 976, 979, 982, 985
Bsh1236I CGCG 1 cut(s) 665
BshFI GGCC 7 cut(s) 217, 236, 244, 342, 543, 617, 627
BshNI GGYRCC 3 cut(s) 272, 503, 828
BsiHKAI GWGCWC 1 cut(s) 447
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 6 cut(s) 233, 269, 392, 408, 425, 561
BslFI GGGAC 2 cut(s) 95, 592
BslI CCNNNNNNNGG 2 cut(s) 269, 619
BsmFI GGGAC 2 cut(s) 95, 592
BsnI GGCC 7 cut(s) 217, 236, 244, 342, 543, 617, 627
BsoBI CYCGRG 1 cut(s) 149
Bsp1286I GDGCHC 3 cut(s) 447, 831, 885
Bsp143I GATC 4 cut(s) 265, 282, 942, 1024
Bsp68I TCGCGA 1 cut(s) 665
BspANI GGCC 7 cut(s) 217, 236, 244, 342, 543, 617, 627
BspFNI CGCG 1 cut(s) 665
BspLI GGNNCC 5 cut(s) 274, 505, 607, 608, 830
BspMAI CTGCAG 1 cut(s) 299
BspPI GGATC 2 cut(s) 260, 950
BspT107I GGYRCC 3 cut(s) 272, 503, 828
BsrFI RCCGGY 1 cut(s) 407
BsrI ACTGG 3 cut(s) 374, 585, 832
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 1 cut(s) 618
BssMI GATC 4 cut(s) 265, 282, 942, 1024
BssNAI GTATAC 1 cut(s) 1041
BssNI GRCGYC 4 cut(s) 222, 273, 471, 917
BssT1I CCWWGG 1 cut(s) 618
Bst1107I GTATAC 1 cut(s) 1041
Bst2UI CCWGG 3 cut(s) 525, 614, 1050
Bst6I CTCTTC 3 cut(s) 341, 687, 906
BstACI GRCGYC 4 cut(s) 222, 273, 471, 917
BstAPI GCANNNNNTGC 1 cut(s) 303
BstC8I GCNNGC 5 cut(s) 499, 637, 870, 881, 987
BstFNI CGCG 1 cut(s) 665
BstH2I RGCGCY 2 cut(s) 202, 276
BstHHI GCGC 3 cut(s) 201, 275, 351
BstKTI GATC 4 cut(s) 268, 285, 945, 1027
BstMBI GATC 4 cut(s) 265, 282, 942, 1024
BstMWI GCNNNNNNNGC 6 cut(s) 303, 306, 348, 995, 998, 1004
BstNI CCWGG 3 cut(s) 525, 614, 1050
BstNSI RCATGY 1 cut(s) 349
BstSCI CCNGG 6 cut(s) 231, 268, 423, 523, 612, 1048
BstSFI CTRYAG 1 cut(s) 295
BstSLI GKGCMC 2 cut(s) 831, 885
BstUI CGCG 1 cut(s) 665
BstV1I GCAGC 6 cut(s) 309, 338, 976, 979, 982, 985
BstV2I GAAGAC 2 cut(s) 465, 1026
BstZ17I GTATAC 1 cut(s) 1041
BsuRI GGCC 7 cut(s) 217, 236, 244, 342, 543, 617, 627
BtsIMutI CAGTG 4 cut(s) 367, 839, 927, 1014
BtuMI TCGCGA 1 cut(s) 665
Cac8I GCNNGC 5 cut(s) 499, 637, 870, 881, 987
CfoI GCGC 3 cut(s) 201, 275, 351
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 4 cut(s) 216, 243, 427, 606
CseI GACGC 3 cut(s) 230, 479, 906
Csp6I GTAC 1 cut(s) 528
CviAII CATG 3 cut(s) 324, 346, 725
CviQI GTAC 1 cut(s) 528
DinI GGCGCC 1 cut(s) 274
DpnI GATC 4 cut(s) 267, 284, 944, 1026
DpnII GATC 4 cut(s) 265, 282, 942, 1024
EaeI YGGCCR 2 cut(s) 234, 340
Eam1104I CTCTTC 3 cut(s) 341, 687, 906
EarI CTCTTC 3 cut(s) 341, 687, 906
EciI GGCGGA 2 cut(s) 241, 378
Ecl136II GAGCTC 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 618
Eco147I AGGCCT 2 cut(s) 543, 617
Eco24I GRGCYC 1 cut(s) 447
Eco47I GGWCC 2 cut(s) 427, 606
Eco47III AGCGCT 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 445
Eco57I CTGAAG 2 cut(s) 704, 1038
Eco88I CYCGRG 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 445
EcoO109I RGGNCCY 1 cut(s) 606
EcoRII CCWGG 3 cut(s) 523, 612, 1048
EcoT14I CCWWGG 1 cut(s) 618
EcoT38I GRGCYC 1 cut(s) 447
EgeI GGCGCC 1 cut(s) 274
EheI GGCGCC 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 618
FaeI CATG 3 cut(s) 327, 349, 728
FaiI YATR 6 cut(s) 325, 347, 630, 726, 812, 1041
FalI AAGNNNNNCTT 4 cut(s) 320, 352, 684, 716
FaqI GGGAC 2 cut(s) 95, 592
FatI CATG 3 cut(s) 323, 345, 724
FauI CCCGC 1 cut(s) 872
FbaI TGATCA 1 cut(s) 1024
FblI GTMKAC 1 cut(s) 1040
FriOI GRGCYC 1 cut(s) 447
FspBI CTAG 3 cut(s) 480, 531, 744
GlaI GCGC 3 cut(s) 200, 274, 350
GsuI CTGGAG 1 cut(s) 868
HaeII RGCGCY 2 cut(s) 202, 276
HaeIII GGCC 7 cut(s) 217, 236, 244, 342, 543, 617, 627
HapII CCGG 6 cut(s) 233, 269, 392, 408, 425, 561
HgaI GACGC 3 cut(s) 230, 479, 906
HhaI GCGC 3 cut(s) 201, 275, 351
Hin1I GRCGYC 4 cut(s) 222, 273, 471, 917
Hin1II CATG 3 cut(s) 327, 349, 728
Hin6I GCGC 3 cut(s) 199, 273, 349
HinP1I GCGC 3 cut(s) 199, 273, 349
HindIII AAGCTT 1 cut(s) 870
HinfI GANTC 4 cut(s) 378, 490, 557, 821
HpaII CCGG 6 cut(s) 233, 269, 392, 408, 425, 561
HphI GGTGA 2 cut(s) 277, 937
Hpy166II GTNNAC 2 cut(s) 536, 1041
Hpy188I TCNGA 1 cut(s) 26
Hpy188III TCNNGA 4 cut(s) 11, 434, 548, 664
Hpy8I GTNNAC 2 cut(s) 536, 1041
Hpy99I CGWCG 5 cut(s) 89, 92, 224, 473, 1048
HpyAV CCTTC 5 cut(s) 148, 322, 440, 554, 646
HpyCH4IV ACGT 3 cut(s) 84, 648, 1043
HpyCH4V TGCA 3 cut(s) 4, 297, 591
HpyF10VI GCNNNNNNNGC 6 cut(s) 303, 306, 348, 995, 998, 1004
HpySE526I ACGT 3 cut(s) 84, 648, 1043
Hsp92I GRCGYC 4 cut(s) 222, 273, 471, 917
Hsp92II CATG 3 cut(s) 327, 349, 728
HspAI GCGC 3 cut(s) 199, 273, 349
KasI GGCGCC 1 cut(s) 272
KflI GGGWCCC 1 cut(s) 606
Ksp22I TGATCA 1 cut(s) 1024
Kzo9I GATC 4 cut(s) 265, 282, 942, 1024
LmnI GCTCC 5 cut(s) 206, 442, 697, 1006, 1012
Lsp1109I GCAGC 6 cut(s) 309, 338, 976, 979, 982, 985
MaeI CTAG 3 cut(s) 480, 531, 744
MaeII ACGT 3 cut(s) 84, 648, 1043
MalI GATC 4 cut(s) 267, 284, 944, 1026
MboI GATC 4 cut(s) 265, 282, 942, 1024
MboII GAAGA 9 cut(s) 114, 120, 328, 470, 704, 710, 923, 1026, 1031
MhlI GDGCHC 3 cut(s) 447, 831, 885
MluCI AATT 1 cut(s) 958
Mly113I GGCGCC 1 cut(s) 273
MlyI GAGTC 2 cut(s) 551, 830
MmeI TCCRAC 3 cut(s) 49, 406, 424
MroXI GAANNNNTTC 1 cut(s) 599
MslI CAYNNNNRTG 1 cut(s) 729
MspA1I CMGCKG 1 cut(s) 501
MspI CCGG 6 cut(s) 233, 269, 392, 408, 425, 561
MspR9I CCNGG 6 cut(s) 233, 270, 425, 525, 614, 1050
MvaI CCWGG 3 cut(s) 525, 614, 1050
MvnI CGCG 1 cut(s) 665
MwoI GCNNNNNNNGC 6 cut(s) 303, 306, 348, 995, 998, 1004
NarI GGCGCC 1 cut(s) 273
NciI CCSGG 3 cut(s) 233, 270, 425
NdeII GATC 4 cut(s) 265, 282, 942, 1024
NlaIII CATG 3 cut(s) 327, 349, 728
NlaIV GGNNCC 5 cut(s) 274, 505, 607, 608, 830
NruI TCGCGA 1 cut(s) 665
NspI RCATGY 1 cut(s) 349
PceI AGGCCT 2 cut(s) 543, 617
PcsI WCGNNNNNNNCGW 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 599
PfeI GAWTC 2 cut(s) 378, 490
PflMI CCANNNNNTGG 1 cut(s) 619
PleI GAGTC 2 cut(s) 551, 829
PluTI GGCGCC 1 cut(s) 276
PpsI GAGTC 2 cut(s) 551, 829
PpuMI RGGWCCY 1 cut(s) 606
Psp124BI GAGCTC 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 606
Psp6I CCWGG 3 cut(s) 523, 612, 1048
PspGI CCWGG 3 cut(s) 523, 612, 1048
PspN4I GGNNCC 5 cut(s) 274, 505, 607, 608, 830
PspPI GGNCC 4 cut(s) 216, 243, 427, 606
PspPPI RGGWCCY 1 cut(s) 606
PstI CTGCAG 1 cut(s) 299
RruI TCGCGA 1 cut(s) 665
RsaI GTAC 1 cut(s) 529
RsaNI GTAC 1 cut(s) 528
RseI CAYNNNNRTG 1 cut(s) 729
SacI GAGCTC 1 cut(s) 447
Sau3AI GATC 4 cut(s) 265, 282, 942, 1024
Sau96I GGNCC 4 cut(s) 216, 243, 427, 606
SchI GAGTC 2 cut(s) 551, 830
ScrFI CCNGG 6 cut(s) 233, 270, 425, 525, 614, 1050
SduI GDGCHC 3 cut(s) 447, 831, 885
SfcI CTRYAG 1 cut(s) 295
SfoI GGCGCC 1 cut(s) 274
SinI GGWCC 2 cut(s) 427, 606
SmiMI CAYNNNNRTG 1 cut(s) 729
SpeI ACTAGT 1 cut(s) 530
Sse9I AATT 1 cut(s) 958
SseBI AGGCCT 2 cut(s) 543, 617
SspDI GGCGCC 1 cut(s) 272
SspMI CTAG 3 cut(s) 480, 531, 744
SstI GAGCTC 1 cut(s) 447
StuI AGGCCT 2 cut(s) 543, 617
StyD4I CCNGG 6 cut(s) 231, 268, 423, 523, 612, 1048
StyI CCWWGG 1 cut(s) 618
TaiI ACGT 3 cut(s) 87, 651, 1046
TaqI TCGA 5 cut(s) 18, 190, 547, 576, 860
TasI AATT 1 cut(s) 958
TauI GCSGC 6 cut(s) 244, 309, 418, 476, 504, 567
TfiI GAWTC 2 cut(s) 378, 490
TscAI CASTG 4 cut(s) 374, 839, 927, 1021
TseI GCWGC 6 cut(s) 297, 351, 989, 992, 995, 998
TspDTI ATGAA 2 cut(s) 114, 692
TspRI CASTG 4 cut(s) 374, 839, 927, 1021
Van91I CCANNNNNTGG 1 cut(s) 619
VpaK11BI GGWCC 2 cut(s) 427, 606
XceI RCATGY 1 cut(s) 349
XmiI GTMKAC 1 cut(s) 1040
XmnI GAANNNNTTC 1 cut(s) 599
XspI CTAG 3 cut(s) 480, 531, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.