FvH4_2g35200

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000848
Physical Location & Seq
Forward (+)
25986704 .. 25988256
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35200.t1

Sequence Viewer

Length: 396 bp
ATGTCGTGGCAGCAGTACGTGGACGAGCACTTGATGTGCGATATCGACGGCAACTCTCTCACCGCCGCCGCCATCCTCGGCCAAGACGGCAGCGTCTGGTCTCAGAGCTCCAACTTCCCTCAGTTTAAGCCGGAAGAGATTGCGGCCATCATGAAAGATTTTGATCAGCCCGGAACGCTTGCACCGACAGGTTTATTTCTCGGTGGGACTAAATATATGGTGATTCAAGGTGAAGCAGGTGCCGTGATTCGAGGAAAGAAGGGATCTGGTGGTGTTACTGTTAAGAAGACCAATCAGGCCTTGATCATTGGTATATATGATGAGCCCATGACTCCTGGGCAGTGCAACATGGTTGTTGAAAGGTTGGGTGATTATCTTGTTGAACAGGGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0007275 GO:0008064 GO:0008092 GO:0008104 GO:0008150 GO:0008154 GO:0009506 GO:0009507 GO:0009524 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009987 GO:0010229 GO:0010639 GO:0015629 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022622 GO:0030029 GO:0030036 GO:0030054 GO:0030312 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0031974 GO:0031981 GO:0032271 GO:0032272 GO:0032501 GO:0032502 GO:0032507 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0033036 GO:0033043 GO:0034613 GO:0040007 GO:0042989 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045185 GO:0048046 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051235 GO:0051493 GO:0051494 GO:0051641 GO:0051651 GO:0055044 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071840 GO:0071944 GO:0090066 GO:0090567 GO:0090696 GO:0097435 GO:0099402 GO:0099568 GO:0110053 GO:1902903 GO:1902904
KEGG Pathways
Metabolic & Signaling
ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132
Pfam Domains
Protein Families
Profilin

Protein Analysis

132

Amino Acids

14.09

Weight (kDa)

4.56

Isoelectric Point (pI)

30.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Profilin PF00235 1 - 131 1.3e-45 Profilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 227
AasI GACNNNNNNGTC 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 239
AciI CCGC 4 cut(s) 63, 66, 69, 143
AclWI GGATC 1 cut(s) 271
AcoI YGGCCR 2 cut(s) 79, 144
AfaI GTAC 1 cut(s) 17
AgsI TTSAA 3 cut(s) 227, 359, 383
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 1 cut(s) 108
AluI AGCT 1 cut(s) 108
Alw21I GWGCWC 2 cut(s) 30, 110
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 1 cut(s) 271
AlwNI CAGNNNCTG 2 cut(s) 96, 391
AoxI GGCC 3 cut(s) 79, 144, 297
ApeKI GCWGC 2 cut(s) 10, 90
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 4 cut(s) 52, 232, 242, 380
BanI GGYRCC 1 cut(s) 239
BanII GRGCYC 2 cut(s) 110, 327
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 2 cut(s) 30, 110
BbvI GCAGC 2 cut(s) 22, 102
BccI CCATC 2 cut(s) 80, 155
BceAI ACGGC 3 cut(s) 64, 103, 227
BciT130I CCWGG 1 cut(s) 336
BclI TGATCA 2 cut(s) 163, 303
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 105
BfuAI ACCTGC 1 cut(s) 227
BglI GCCNNNNNGGC 1 cut(s) 87
BisI GCNGC 5 cut(s) 11, 66, 69, 91, 144
BlsI GCNGC 5 cut(s) 12, 67, 70, 92, 145
Bme1390I CCNGG 2 cut(s) 171, 336
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 2 cut(s) 171, 336
BpiI GAAGAC 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 19
BsaBI GATNNNNATC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 76, 335
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 76, 335
BseGI GGATG 1 cut(s) 72
BseJI GATNNNNATC 1 cut(s) 162
BseMII CTCAG 2 cut(s) 116, 134
BseXI GCAGC 2 cut(s) 22, 102
BshFI GGCC 3 cut(s) 81, 146, 299
BshNI GGYRCC 1 cut(s) 239
BsiHKAI GWGCWC 2 cut(s) 30, 110
BsiSI CCGG 2 cut(s) 131, 171
BslFI GGGAC 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 220
BsnI GGCC 3 cut(s) 81, 146, 299
Bso31I GGTCTC 1 cut(s) 105
Bsp1286I GDGCHC 3 cut(s) 30, 110, 327
Bsp143I GATC 3 cut(s) 163, 263, 303
BspACI CCGC 4 cut(s) 63, 66, 69, 143
BspANI GGCC 3 cut(s) 81, 146, 299
BspCNI CTCAG 2 cut(s) 115, 133
BspHI TCATGA 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 227
BspPI GGATC 1 cut(s) 271
BspT107I GGYRCC 1 cut(s) 239
BspTNI GGTCTC 1 cut(s) 105
BssECI CCNNGG 2 cut(s) 76, 335
BssMI GATC 3 cut(s) 163, 263, 303
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 129
BstBAI YACGTR 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 102, 120
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 3 cut(s) 166, 266, 306
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 3 cut(s) 163, 263, 303
BstMWI GCNNNNNNNGC 2 cut(s) 87, 175
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 2 cut(s) 169, 334
BstV1I GCAGC 2 cut(s) 22, 102
BstV2I GAAGAC 1 cut(s) 293
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BsuRI GGCC 3 cut(s) 81, 146, 299
BtsCI GGATG 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 347
BtsIMutI CAGTG 1 cut(s) 347
BveI ACCTGC 1 cut(s) 227
Cac8I GCNNGC 1 cut(s) 180
CaiI CAGNNNCTG 2 cut(s) 96, 391
CciI TCATGA 1 cut(s) 150
CseI GACGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 16
CviAII CATG 3 cut(s) 151, 328, 349
CviJI RGCY 7 cut(s) 81, 108, 130, 146, 169, 299, 325
CviKI_1 RGCY 7 cut(s) 81, 108, 130, 146, 169, 299, 325
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 2 cut(s) 102, 120
DpnI GATC 3 cut(s) 165, 265, 305
DpnII GATC 3 cut(s) 163, 263, 303
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 2 cut(s) 79, 144
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Ecl136II GAGCTC 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 299
Eco24I GRGCYC 2 cut(s) 110, 327
Eco31I GGTCTC 1 cut(s) 105
Eco32I GATATC 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 334
EcoRV GATATC 1 cut(s) 43
EcoT38I GRGCYC 2 cut(s) 110, 327
FaeI CATG 3 cut(s) 154, 331, 352
FaiI YATR 8 cut(s) 152, 216, 218, 314, 316, 318, 329, 350
FaqI GGGAC 1 cut(s) 220
FatI CATG 3 cut(s) 150, 327, 348
FbaI TGATCA 2 cut(s) 163, 303
Fnu4HI GCNGC 5 cut(s) 11, 66, 69, 91, 144
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 2 cut(s) 110, 327
Fsp4HI GCNGC 5 cut(s) 11, 66, 69, 91, 144
GluI GCNGC 5 cut(s) 11, 66, 69, 91, 144
HaeIII GGCC 3 cut(s) 81, 146, 299
HapII CCGG 2 cut(s) 131, 171
HgaI GACGC 1 cut(s) 82
Hin1II CATG 3 cut(s) 154, 331, 352
HinfI GANTC 3 cut(s) 223, 247, 331
HpaII CCGG 2 cut(s) 131, 171
HphI GGTGA 4 cut(s) 52, 232, 242, 380
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 1 cut(s) 151
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 182, 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 175
HpyF3I CTNAG 2 cut(s) 102, 120
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 3 cut(s) 154, 331, 352
Ksp22I TGATCA 2 cut(s) 163, 303
Kzo9I GATC 3 cut(s) 163, 263, 303
LmnI GCTCC 1 cut(s) 113
Lsp1109I GCAGC 2 cut(s) 22, 102
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 274
MalI GATC 3 cut(s) 165, 265, 305
MboI GATC 3 cut(s) 163, 263, 303
MboII GAAGA 2 cut(s) 146, 298
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 3 cut(s) 30, 110, 327
MlyI GAGTC 1 cut(s) 325
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 3 cut(s) 86, 129, 245
MseI TTAA 2 cut(s) 126, 282
MspI CCGG 2 cut(s) 131, 171
MspR9I CCNGG 2 cut(s) 171, 336
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 2 cut(s) 87, 175
NciI CCSGG 1 cut(s) 171
NdeII GATC 3 cut(s) 163, 263, 303
NlaIII CATG 3 cut(s) 154, 331, 352
NlaIV GGNNCC 1 cut(s) 241
NmeAIII GCCGAG 1 cut(s) 57
PagI TCATGA 1 cut(s) 150
PaqCI CACCTGC 1 cut(s) 227
PceI AGGCCT 1 cut(s) 299
PcsI WCGNNNNNNNCGW 1 cut(s) 182
PfeI GAWTC 2 cut(s) 223, 247
PkrI GCNGC 5 cut(s) 12, 67, 70, 92, 145
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
Ppu21I YACGTR 1 cut(s) 19
Psp124BI GAGCTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 241
PstNI CAGNNNCTG 2 cut(s) 96, 391
PsuI RGATCY 1 cut(s) 263
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SacI GAGCTC 1 cut(s) 110
SaqAI TTAA 2 cut(s) 126, 282
SatI GCNGC 5 cut(s) 11, 66, 69, 91, 144
Sau3AI GATC 3 cut(s) 163, 263, 303
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 2 cut(s) 171, 336
SduI GDGCHC 3 cut(s) 30, 110, 327
SetI ASST 6 cut(s) 21, 110, 193, 232, 241, 365
SseBI AGGCCT 1 cut(s) 299
SsiI CCGC 4 cut(s) 63, 66, 69, 143
SstI GAGCTC 1 cut(s) 110
StuI AGGCCT 1 cut(s) 299
StyD4I CCNGG 2 cut(s) 169, 334
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 45, 250
TauI GCSGC 3 cut(s) 68, 71, 146
TfiI GAWTC 2 cut(s) 223, 247
Tru1I TTAA 2 cut(s) 126, 282
Tru9I TTAA 2 cut(s) 126, 282
TscAI CASTG 1 cut(s) 347
TseI GCWGC 2 cut(s) 10, 90
TspDTI ATGAA 1 cut(s) 167
TspRI CASTG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.