RchiOBHm_Chr6g0294811

Profilin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000848
Physical Location & Seq
Forward (+)
57002728 .. 57004482
1755 bp
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UTR
Exon/CDS
Intron
PRQ26461

Sequence Viewer

Length: 396 bp
ATGTCGTGGCAGGCGTACGTGGATGATCACTTGATGTGCGACGTCGACGGCCACCACCTGACCGCCGCGGCCATCGTCGGTCATGACGGTAGTGTGTGGGCTCAGAGCTCAAGCTTCCCTCAGTTCAAGCCGGAAGAAGTTGCAGCGATAATGAAAGATTTTGATGAGCCAGGGTCTCTTGCCCCAACTGGATTGCACCTTGGTGGCACAAAGTACATGGTTATTCAGGGGGAGAGTGGAGCCGTAATTCGTGGAAAGAAGGGTTCTGGTGGCATTACTGTGAAGAAAACCAGCCAGGCTATGATTTTAGGTATTTATGATGAGCCTTTGACACCCGGACAGTGTAACATGATCGTGGAAAGGTTGGGAGATTACCTGATTGATCAGGGCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132
Pfam Domains
Protein Families
Profilin

Protein Analysis

131

Amino Acids

14.01

Weight (kDa)

4.98

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Profilin PF00235 1 - 131 1.2e-45 Profilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 45
AccI GTMKAC 1 cut(s) 45
AccII CGCG 1 cut(s) 68
AciI CCGC 3 cut(s) 63, 66, 68
AcoI YGGCCR 2 cut(s) 49, 69
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 2 cut(s) 17, 215
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 2 cut(s) 169, 294
AleI CACNNNNGTG 1 cut(s) 201
AluBI AGCT 2 cut(s) 108, 114
AluI AGCT 2 cut(s) 108, 114
Alw21I GWGCWC 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 180
AoxI GGCC 3 cut(s) 49, 69, 388
ApeKI GCWGC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 388
AsuC2I CCSGG 1 cut(s) 336
BanII GRGCYC 2 cut(s) 103, 110
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 155
BccI CCATC 1 cut(s) 80
BceAI ACGGC 2 cut(s) 64, 227
BciT130I CCWGG 2 cut(s) 171, 296
BclI TGATCA 2 cut(s) 25, 382
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 392
BisI GCNGC 3 cut(s) 66, 69, 144
BlsI GCNGC 3 cut(s) 67, 70, 145
Bme1390I CCNGG 3 cut(s) 171, 296, 336
BmgT120I GGNCC 1 cut(s) 388
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 3 cut(s) 171, 296, 336
BpuEI CTTGAG 1 cut(s) 94
BpuMI CCSGG 1 cut(s) 336
BsaAI YACGTR 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 3 cut(s) 66, 170, 199
Bse1I ACTGG 1 cut(s) 193
BseBI CCWGG 2 cut(s) 171, 296
BseDI CCNNGG 3 cut(s) 66, 170, 199
BseGI GGATG 1 cut(s) 28
BseMII CTCAG 2 cut(s) 116, 134
BseNI ACTGG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 3 cut(s) 51, 71, 390
BsiHKAI GWGCWC 1 cut(s) 110
BsiSI CCGG 2 cut(s) 131, 336
BsiWI CGTACG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 180
BsnI GGCC 3 cut(s) 51, 71, 390
Bso31I GGTCTC 1 cut(s) 180
Bsp1286I GDGCHC 2 cut(s) 103, 110
Bsp143I GATC 3 cut(s) 25, 351, 382
BspACI CCGC 3 cut(s) 63, 66, 68
BspANI GGCC 3 cut(s) 51, 71, 390
BspCNI CTCAG 2 cut(s) 115, 133
BspFNI CGCG 1 cut(s) 68
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 241
BspTNI GGTCTC 1 cut(s) 180
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 3 cut(s) 66, 170, 199
BssMI GATC 3 cut(s) 25, 351, 382
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 199
Bst2UI CCWGG 2 cut(s) 171, 296
Bst4CI ACNGT 3 cut(s) 89, 280, 342
BstACI GRCGYC 1 cut(s) 42
BstBAI YACGTR 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 102, 120
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 28
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 3 cut(s) 28, 354, 385
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 3 cut(s) 25, 351, 382
BstNI CCWGG 2 cut(s) 171, 296
BstSCI CCNGG 3 cut(s) 169, 294, 334
BstSFI CTRYAG 1 cut(s) 392
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 155
BsuRI GGCC 3 cut(s) 51, 71, 390
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 347
Cac8I GCNNGC 1 cut(s) 12
CciI TCATGA 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 388
Cfr42I CCGCGG 1 cut(s) 69
Csp6I GTAC 2 cut(s) 16, 214
CviAII CATG 3 cut(s) 83, 217, 349
CviQI GTAC 2 cut(s) 16, 214
DdeI CTNAG 2 cut(s) 102, 120
DpnI GATC 3 cut(s) 27, 353, 384
DpnII GATC 3 cut(s) 25, 351, 382
EaeI YGGCCR 2 cut(s) 49, 69
Ecl136II GAGCTC 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 199
Eco24I GRGCYC 2 cut(s) 103, 110
Eco31I GGTCTC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 108
EcoO109I RGGNCCY 1 cut(s) 388
EcoRII CCWGG 2 cut(s) 169, 294
EcoT14I CCWWGG 1 cut(s) 199
EcoT38I GRGCYC 2 cut(s) 103, 110
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 3 cut(s) 86, 220, 352
FaiI YATR 6 cut(s) 84, 218, 302, 318, 350, 394
FatI CATG 3 cut(s) 82, 216, 348
FbaI TGATCA 2 cut(s) 25, 382
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 3 cut(s) 66, 69, 144
FokI GGATG 1 cut(s) 35
FriOI GRGCYC 2 cut(s) 103, 110
Fsp4HI GCNGC 3 cut(s) 66, 69, 144
GluI GCNGC 3 cut(s) 66, 69, 144
HaeIII GGCC 3 cut(s) 51, 71, 390
HapII CCGG 2 cut(s) 131, 336
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 3 cut(s) 86, 220, 352
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 112
HpaII CCGG 2 cut(s) 131, 336
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 46
Hpy99I CGWCG 4 cut(s) 44, 47, 50, 80
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 3 cut(s) 89, 280, 342
HpyCH4IV ACGT 2 cut(s) 18, 42
HpyCH4V TGCA 2 cut(s) 143, 196
HpyF3I CTNAG 2 cut(s) 102, 120
HpySE526I ACGT 2 cut(s) 18, 42
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 3 cut(s) 86, 220, 352
Ksp22I TGATCA 2 cut(s) 25, 382
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 3 cut(s) 25, 351, 382
LmnI GCTCC 1 cut(s) 239
Lsp1109I GCAGC 1 cut(s) 155
MaeII ACGT 2 cut(s) 18, 42
MaeIII GTNAC 1 cut(s) 344
MalI GATC 3 cut(s) 27, 353, 384
MboI GATC 3 cut(s) 25, 351, 382
MboII GAAGA 2 cut(s) 146, 295
MhlI GDGCHC 2 cut(s) 103, 110
MluCI AATT 1 cut(s) 246
MnlI CCTC 1 cut(s) 129
MslI CAYNNNNRTG 3 cut(s) 201, 278, 353
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 2 cut(s) 131, 336
MspR9I CCNGG 3 cut(s) 171, 296, 336
MvaI CCWGG 2 cut(s) 171, 296
MvnI CGCG 1 cut(s) 68
NciI CCSGG 1 cut(s) 336
NdeII GATC 3 cut(s) 25, 351, 382
NlaIII CATG 3 cut(s) 86, 220, 352
NlaIV GGNNCC 1 cut(s) 241
OliI CACNNNNGTG 1 cut(s) 201
PagI TCATGA 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 11
Pfl23II CGTACG 1 cut(s) 15
PkrI GCNGC 3 cut(s) 67, 70, 145
Ppu21I YACGTR 1 cut(s) 19
Psp124BI GAGCTC 1 cut(s) 110
Psp6I CCWGG 2 cut(s) 169, 294
PspGI CCWGG 2 cut(s) 169, 294
PspLI CGTACG 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 1 cut(s) 388
RsaI GTAC 2 cut(s) 17, 215
RsaNI GTAC 2 cut(s) 16, 214
RseI CAYNNNNRTG 3 cut(s) 201, 278, 353
SacI GAGCTC 1 cut(s) 110
SacII CCGCGG 1 cut(s) 69
SalI GTCGAC 1 cut(s) 44
SatI GCNGC 3 cut(s) 66, 69, 144
Sau3AI GATC 3 cut(s) 25, 351, 382
Sau96I GGNCC 1 cut(s) 388
ScrFI CCNGG 3 cut(s) 171, 296, 336
SduI GDGCHC 2 cut(s) 103, 110
SetI ASST 9 cut(s) 21, 45, 60, 110, 116, 201, 313, 365, 378
SfcI CTRYAG 1 cut(s) 392
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SgrDI CGTCGACG 1 cut(s) 44
SmiMI CAYNNNNRTG 3 cut(s) 201, 278, 353
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 1 cut(s) 246
SsiI CCGC 3 cut(s) 63, 66, 68
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 3 cut(s) 169, 294, 334
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 3 cut(s) 89, 280, 342
TaiI ACGT 2 cut(s) 21, 45
TaqI TCGA 1 cut(s) 45
TaqII GACCGA 1 cut(s) 68
TasI AATT 1 cut(s) 246
TatI WGTACW 1 cut(s) 213
TauI GCSGC 2 cut(s) 68, 71
TscAI CASTG 1 cut(s) 347
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 167
TspRI CASTG 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 45
ZraI GACGTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.