Rh2BG427000

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000848
Physical Location & Seq
Reverse (-)
60182789 .. 60185813
3025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG427000.1

Sequence Viewer

Length: 300 bp
ATGTCGTGGCAGGCTTACGTCGACGATCACTTGATGTGCGACATCGACGGCCACCATCTCGCCTCCGCGGCCATCGTCGGTCACGACGGTAGTGTCTGGGCTCAGAGCTCCAACTTCCCCAAGTTTAAGCCTGAAGAGATTACAGCGATCATGAAAGATTTTAATGAGCCTGGGTCTCTTGCCCCAACTGGTCTGCACCTTGCTGGCACAAAGTACATGGTTATTCAAGGGGAGGGCGGAGCTGTTATTCGTGGGAAGAAGGTTAGTTTGTTTTACAGTGGTTCTTCACTATGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132
Pfam Domains
Protein Families
Profilin

Protein Analysis

99

Amino Acids

10.64

Weight (kDa)

5.87

Isoelectric Point (pI)

31.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Profilin PF00235 1 - 87 1.4e-25 Profilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AccI GTMKAC 1 cut(s) 21
AccII CGCG 1 cut(s) 68
AciI CCGC 3 cut(s) 66, 68, 237
AcoI YGGCCR 2 cut(s) 49, 69
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 1 cut(s) 215
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 2 cut(s) 108, 242
AluI AGCT 2 cut(s) 108, 242
Alw21I GWGCWC 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 180
AoxI GGCC 2 cut(s) 49, 69
BanII GRGCYC 2 cut(s) 103, 110
Bbv12I GWGCWC 1 cut(s) 110
BccI CCATC 2 cut(s) 63, 80
BceAI ACGGC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 180
BglI GCCNNNNNGGC 1 cut(s) 68
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 66, 170
Bse1I ACTGG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 66, 170
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 193
BsgI GTGCAG 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 2 cut(s) 51, 71
BsiHKAI GWGCWC 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 180
BsnI GGCC 2 cut(s) 51, 71
Bso31I GGTCTC 1 cut(s) 180
Bsp1286I GDGCHC 2 cut(s) 103, 110
Bsp143I GATC 2 cut(s) 25, 147
BspACI CCGC 3 cut(s) 66, 68, 237
BspANI GGCC 2 cut(s) 51, 71
BspCNI CTCAG 1 cut(s) 115
BspFNI CGCG 1 cut(s) 68
BspHI TCATGA 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 180
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 2 cut(s) 66, 170
BssMI GATC 2 cut(s) 25, 147
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 2 cut(s) 89, 278
Bst6I CTCTTC 1 cut(s) 129
BstC8I GCNNGC 2 cut(s) 12, 205
BstDEI CTNAG 1 cut(s) 102
BstDSI CCRYGG 1 cut(s) 66
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 2 cut(s) 28, 150
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 2 cut(s) 25, 147
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstUI CGCG 1 cut(s) 68
BsuRI GGCC 2 cut(s) 51, 71
BtgI CCRYGG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 283
Cac8I GCNNGC 2 cut(s) 12, 205
CciI TCATGA 1 cut(s) 150
Cfr42I CCGCGG 1 cut(s) 69
Csp6I GTAC 1 cut(s) 214
CviAII CATG 2 cut(s) 151, 217
CviJI RGCY 8 cut(s) 14, 51, 71, 101, 108, 130, 169, 242
CviKI_1 RGCY 8 cut(s) 14, 51, 71, 101, 108, 130, 169, 242
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 1 cut(s) 102
DpnI GATC 2 cut(s) 27, 149
DpnII GATC 2 cut(s) 25, 147
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 2 cut(s) 49, 69
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EciI GGCGGA 1 cut(s) 252
Ecl136II GAGCTC 1 cut(s) 108
Eco24I GRGCYC 2 cut(s) 103, 110
Eco31I GGTCTC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 169
EcoT38I GRGCYC 2 cut(s) 103, 110
FaeI CATG 2 cut(s) 154, 220
FaiI YATR 3 cut(s) 152, 218, 292
FatI CATG 2 cut(s) 150, 216
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 69
FriOI GRGCYC 2 cut(s) 103, 110
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 2 cut(s) 51, 71
Hin1II CATG 2 cut(s) 154, 220
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 2 cut(s) 83, 151
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 5 cut(s) 23, 26, 50, 80, 89
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 2 cut(s) 89, 278
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 2 cut(s) 154, 220
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 2 cut(s) 25, 147
LmnI GCTCC 2 cut(s) 113, 239
LpnPI CCDG 6 cut(s) 82, 144, 156, 174, 183, 189
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 80
MalI GATC 2 cut(s) 27, 149
MboI GATC 2 cut(s) 25, 147
MboII GAAGA 3 cut(s) 146, 268, 276
MhlI GDGCHC 2 cut(s) 103, 110
MluCI AATT 1 cut(s) 295
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 2 cut(s) 73, 226
MseI TTAA 2 cut(s) 126, 162
MspA1I CMGCKG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 2 cut(s) 25, 147
NlaIII CATG 2 cut(s) 154, 220
NmuCI GTSAC 1 cut(s) 80
PagI TCATGA 1 cut(s) 150
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PkrI GCNGC 1 cut(s) 70
Psp124BI GAGCTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SacI GAGCTC 1 cut(s) 110
SacII CCGCGG 1 cut(s) 69
SalI GTCGAC 1 cut(s) 20
SaqAI TTAA 2 cut(s) 126, 162
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 2 cut(s) 25, 147
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 2 cut(s) 103, 110
SetI ASST 5 cut(s) 21, 110, 201, 244, 264
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SgrDI CGTCGACG 1 cut(s) 20
Sse9I AATT 1 cut(s) 295
SsiI CCGC 3 cut(s) 66, 68, 237
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 2 cut(s) 89, 278
TaiI ACGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 21, 45
TaqII GACCGA 1 cut(s) 68
TasI AATT 1 cut(s) 295
TatI WGTACW 1 cut(s) 213
TauI GCSGC 1 cut(s) 71
Tru1I TTAA 2 cut(s) 126, 162
Tru9I TTAA 2 cut(s) 126, 162
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 167
TspRI CASTG 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.