AT2G21540

Phosphatidylinositol phosphatidylcholine transfer protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
9220505 .. 9224496
3992 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G21540.5

Sequence Viewer

Length: 1647 bp
ATGACGGATACAATGTCTGCTCATATGGATCGACATAATAAGCTTGATTATGACGGCTCAGAGGATGAAAAGAAAACAAAGCTTTGTTCCCTCAAGAAGAAAGCAATCAATGCCTCCAACAAATTCAAACACTCCTTCACCAAGAGAACTCGAAGGAACAGCCGAGTCATGTCTGTCTCTATTGTTGACGATATTGATCTTGAAGAGCTTCAAGCTGTTGACGCTTTCCGTCAAGCTCTTATCCTAGACGAGCTTCTCCCTTCCAAACACGATGATCATCACATGATGCTGAGGTTTCTGAGGGCAAGGAAGTTTGATCTTGAGAAAGCAAAGCAAATGTGGACTGATATGATCCATTGGAGGAAAGAGTTTGGTGTTGACACAATCATGGAGGACTTTGATTTCAAGGAGATTGATGAAGTCCTCAAGTACTACCCTCAAGGTTACCATGGTGTTGACAAAGATGGAAGGCCTGTTTACATTGAGAGGCTAGGCCAAGTTGATGCCACAAAGCTGATGCAAGTCACTACCATCGATAGGTATGTCAAGTACCATGTGAGAGAGTTTGAGAAGACTTTCAATATCAAATTACCAGCTTGTTCCATTGCTGCCAAGAAGCATATTGATCAGAGCACCACCATCTTGGATGTGCAAGGCGTGGGGTTGAAGAGCTTCAGTAAGGCTGCAAGGGATCTTCTTCAGCGTATCCAGAAGATCGATAGCGATAACTACCCTGAGACATTGAACCGTATGTTCATTATCAACGCTGGTAGTGGATTCAGGCTTCTGTGGAGCACTGTGAAATCTTTCCTTGACCCAAAGACCACCGCAAAGATTCACGTTCTTGGCAACAAATACCAAAGCAAGCTGCTTGAGATTATCGACTCCAATGAACTTCCTGAGTTCTTGGGTGGTAACTGCACTTGTGCAGACAAAGGTGGATGTATGCGTTCTGACAAAGGTCCATGGAACGACCCTGACATCTTCAAGATGGTTCAGAACGGAGAAGGAAAGTGCCCAAGGAAGACTTTGTCAAACATTGAAGAGAAGACAATCTCAGTGGACGAGAACACAACAATGAAATCTGATTCCTTTGCGAAGAACAAATTCGATGCAGAGAACACAAAATTCATACCGATGATTGACAAAACTGTGAATGCTTCTACATGGCCTACAAATCTCCACAAGTCAAACTATCCTGAACCTGAAGATTTATACTCTGCCGTGAAGCCATCGCAGAGGAGAGGAGGAGAAGGTTATTTATTCGGGGGAGTGATGTCTTTGGTGATGGGGTTAATGACTGTGGTGAGGCTAACGAAGAACATGCCAAGGAAGCTCACTGAGGCTGCCATTTACGGTGGTGAAGTGGACAAAGCAGAGACTACAATGGTGTCAAACCAAGAGTATATGTCGATGGTGAAGAGAATGGCCGAGTTGGAGGAGAAATGTAGGTCTTTGGACAATCAGCCTGCAGCGTTCTCGCCAGAGAAAGAACAGATTCTCACCGCTGCTCTCAGCCGTGTCGACGAGCTAGAGCTTCAGTTGGCTCAGACCAAAAAGACGCTGGAGGAAACCATGGCAACGCAGCATGTGATAATGGCTTATATCGACAAGAAGAAAAAGAAGAAGAAGTTCTTTGGATTCTGA

Protein Analysis

548

Amino Acids

62.83

Weight (kDa)

8.71

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_N PF03765 89 - 116 3.8e-08 CRAL/TRIO, N-terminal domain
CRAL_TRIO PF00650 143 - 305 1.2e-31 CRAL/TRIO domain
CRAL_TRIO_2 PF13716 213 - 304 7.9e-06 Divergent CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1524
AciI CCGC 2 cut(s) 828, 1506
AclWI GGATC 3 cut(s) 36, 346, 699
AcoI YGGCCR 1 cut(s) 1428
AcsI RAATTY 3 cut(s) 122, 1106, 1127
AcuI CTGAAG 4 cut(s) 658, 683, 1227, 1523
AfaI GTAC 2 cut(s) 431, 551
AfiI CCNNNNNNNGG 1 cut(s) 537
AgsI TTSAA 9 cut(s) 127, 203, 212, 406, 580, 667, 745, 988, 1043
Alw21I GWGCWC 2 cut(s) 635, 797
Alw26I GTCTC 3 cut(s) 181, 731, 1373
AlwI GGATC 3 cut(s) 36, 346, 699
AoxI GGCC 4 cut(s) 470, 493, 1169, 1428
ApeKI GCWGC 7 cut(s) 608, 683, 868, 1346, 1472, 1508, 1585
ApoI RAATTY 3 cut(s) 122, 1106, 1127
Asp700I GAANNNNTTC 7 cut(s) 207, 575, 671, 806, 1106, 1497, 1631
AspS9I GGNCC 1 cut(s) 962
AsuHPI GGTGA 6 cut(s) 130, 1297, 1318, 1373, 1429, 1495
AvaII GGWCC 1 cut(s) 962
BaeGI GKGCMC 1 cut(s) 1019
BbsI GAAGAC 3 cut(s) 578, 1031, 1055
Bbv12I GWGCWC 2 cut(s) 635, 797
BbvCI CCTCAGC 1 cut(s) 290
BbvI GCAGC 7 cut(s) 595, 670, 855, 1333, 1484, 1495, 1597
BccI CCATC 7 cut(s) 458, 539, 647, 985, 1240, 1282, 1408
BceAI ACGGC 3 cut(s) 70, 1208, 1503
BcgI CGANNNNNNTGC 4 cut(s) 1306, 1340, 1461, 1495
BciVI GTATCC 1 cut(s) 716
BclI TGATCA 2 cut(s) 274, 625
BcoDI GTCTC 3 cut(s) 181, 731, 1373
BfaI CTAG 3 cut(s) 245, 491, 1532
BfmI CTRYAG 1 cut(s) 1470
BfuI GTATCC 1 cut(s) 716
BisI GCNGC 7 cut(s) 609, 684, 869, 1347, 1473, 1509, 1586
BlsI GCNGC 7 cut(s) 610, 685, 870, 1348, 1474, 1510, 1587
BmcAI AGTACT 1 cut(s) 431
Bme18I GGWCC 1 cut(s) 962
BmgT120I GGNCC 1 cut(s) 962
BmsI GCATC 4 cut(s) 276, 493, 507, 1102
BoxI GACNNNNGTC 1 cut(s) 960
BpiI GAAGAC 3 cut(s) 578, 1031, 1055
BpmI CTGGAG 1 cut(s) 1586
Bpu10I CCTNAGC 1 cut(s) 290
BpuEI CTTGAG 5 cut(s) 77, 341, 410, 423, 893
Bsa29I ATCGAT 2 cut(s) 534, 717
BsaBI GATNNNNATC 2 cut(s) 195, 276
BsaJI CCNNGG 5 cut(s) 448, 965, 1019, 1328, 1575
Bsc4I CCNNNNNNNGG 1 cut(s) 537
Bse3DI GCAATG 1 cut(s) 603
Bse8I GATNNNNATC 2 cut(s) 195, 276
BseCI ATCGAT 2 cut(s) 534, 717
BseDI CCNNGG 5 cut(s) 448, 965, 1019, 1328, 1575
BseGI GGATG 3 cut(s) 70, 652, 947
BseJI GATNNNNATC 2 cut(s) 195, 276
BseLI CCNNNNNNNGG 1 cut(s) 537
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 9 cut(s) 72, 281, 290, 726, 891, 1071, 1332, 1528, 1562
BseRI GAGGAG 4 cut(s) 1255, 1260, 1263, 1454
BseSI GKGCMC 1 cut(s) 1019
BseXI GCAGC 7 cut(s) 595, 670, 855, 1333, 1484, 1495, 1597
BsgI GTGCAG 2 cut(s) 904, 948
BshFI GGCC 4 cut(s) 472, 495, 1171, 1430
BshVI ATCGAT 2 cut(s) 534, 717
BsiHKAI GWGCWC 2 cut(s) 635, 797
BslI CCNNNNNNNGG 1 cut(s) 537
BsmAI GTCTC 3 cut(s) 181, 731, 1373
BsmI GAATGC 1 cut(s) 1162
BsnI GGCC 4 cut(s) 472, 495, 1171, 1430
Bsp1286I GDGCHC 3 cut(s) 635, 797, 1019
Bsp143I GATC 8 cut(s) 28, 196, 274, 316, 351, 625, 691, 714
Bsp19I CCATGG 3 cut(s) 448, 965, 1575
BspACI CCGC 2 cut(s) 828, 1506
BspANI GGCC 4 cut(s) 472, 495, 1171, 1430
BspCNI CTCAG 9 cut(s) 71, 282, 291, 727, 892, 1070, 1333, 1527, 1561
BspDI ATCGAT 2 cut(s) 534, 717
BspMAI CTGCAG 1 cut(s) 1474
BspPI GGATC 3 cut(s) 36, 346, 699
BspQI GCTCTTC 2 cut(s) 198, 662
BsrDI GCAATG 1 cut(s) 603
BssECI CCNNGG 5 cut(s) 448, 965, 1019, 1328, 1575
BssMI GATC 8 cut(s) 28, 196, 274, 316, 351, 625, 691, 714
BssT1I CCWWGG 5 cut(s) 448, 965, 1019, 1328, 1575
Bst4CI ACNGT 5 cut(s) 749, 799, 1153, 1303, 1358
Bst6I CTCTTC 4 cut(s) 198, 662, 1038, 1415
BstAPI GCANNNNNTGC 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 866, 1470
BstDEI CTNAG 9 cut(s) 58, 290, 299, 735, 900, 1057, 1341, 1514, 1548
BstDSI CCRYGG 3 cut(s) 448, 965, 1575
BstEII GGTNACC 1 cut(s) 443
BstF5I GGATG 3 cut(s) 70, 652, 947
BstKTI GATC 8 cut(s) 31, 199, 277, 319, 354, 628, 694, 717
BstMAI GTCTC 3 cut(s) 181, 731, 1373
BstMBI GATC 8 cut(s) 28, 196, 274, 316, 351, 625, 691, 714
BstMWI GCNNNNNNNGC 3 cut(s) 110, 221, 1333
BstNSI RCATGY 2 cut(s) 1327, 1592
BstPAI GACNNNNGTC 1 cut(s) 960
BstPI GGTNACC 1 cut(s) 443
BstSFI CTRYAG 1 cut(s) 1470
BstSLI GKGCMC 1 cut(s) 1019
BstV1I GCAGC 7 cut(s) 595, 670, 855, 1333, 1484, 1495, 1597
BstV2I GAAGAC 3 cut(s) 578, 1031, 1055
BstX2I RGATCY 1 cut(s) 691
BstXI CCANNNNNNTGG 1 cut(s) 643
BstYI RGATCY 1 cut(s) 691
Bsu15I ATCGAT 2 cut(s) 534, 717
BsuI GTATCC 1 cut(s) 716
BsuRI GGCC 4 cut(s) 472, 495, 1171, 1430
BsuTUI ATCGAT 2 cut(s) 534, 717
BtgI CCRYGG 3 cut(s) 448, 965, 1575
BtgZI GCGATG 1 cut(s) 1218
BtsCI GGATG 3 cut(s) 70, 652, 947
BtsIMutI CAGTG 3 cut(s) 795, 1065, 1338
Cac8I GCNNGC 2 cut(s) 866, 1470
Cfr13I GGNCC 1 cut(s) 962
ClaI ATCGAT 2 cut(s) 534, 717
CseI GACGC 2 cut(s) 230, 1570
Csp6I GTAC 2 cut(s) 430, 550
CspCI CAANNNNNGTGG 2 cut(s) 1041, 1076
CviQI GTAC 2 cut(s) 430, 550
DdeI CTNAG 9 cut(s) 58, 290, 299, 735, 900, 1057, 1341, 1514, 1548
DpnI GATC 8 cut(s) 30, 198, 276, 318, 353, 627, 693, 716
DpnII GATC 8 cut(s) 28, 196, 274, 316, 351, 625, 691, 714
EaeI YGGCCR 1 cut(s) 1428
Eam1104I CTCTTC 4 cut(s) 198, 662, 1038, 1415
EarI CTCTTC 4 cut(s) 198, 662, 1038, 1415
Eco130I CCWWGG 5 cut(s) 448, 965, 1019, 1328, 1575
Eco147I AGGCCT 1 cut(s) 472
Eco47I GGWCC 1 cut(s) 962
Eco57I CTGAAG 4 cut(s) 658, 683, 1227, 1523
Eco91I GGTNACC 1 cut(s) 443
EcoO65I GGTNACC 1 cut(s) 443
EcoT14I CCWWGG 5 cut(s) 448, 965, 1019, 1328, 1575
ErhI CCWWGG 5 cut(s) 448, 965, 1019, 1328, 1575
FalI AAGNNNNNCTT 3 cut(s) 1012, 1044, 1619
FauNDI CATATG 1 cut(s) 24
FbaI TGATCA 2 cut(s) 274, 625
FblI GTMKAC 1 cut(s) 1524
Fnu4HI GCNGC 7 cut(s) 609, 684, 869, 1347, 1473, 1509, 1586
FokI GGATG 3 cut(s) 77, 659, 954
Fsp4HI GCNGC 7 cut(s) 609, 684, 869, 1347, 1473, 1509, 1586
FspBI CTAG 3 cut(s) 245, 491, 1532
GluI GCNGC 7 cut(s) 609, 684, 869, 1347, 1473, 1509, 1586
GsuI CTGGAG 1 cut(s) 1586
HaeIII GGCC 4 cut(s) 472, 495, 1171, 1430
HgaI GACGC 2 cut(s) 230, 1570
HincII GTYRAC 5 cut(s) 187, 220, 379, 457, 1525
HindII GTYRAC 5 cut(s) 187, 220, 379, 457, 1525
HindIII AAGCTT 2 cut(s) 41, 80
HinfI GANTC 7 cut(s) 165, 777, 835, 884, 1088, 1498, 1641
HphI GGTGA 6 cut(s) 130, 1297, 1318, 1373, 1429, 1495
Hpy166II GTNNAC 9 cut(s) 187, 220, 342, 379, 457, 478, 1063, 1369, 1525
Hpy188I TCNGA 8 cut(s) 61, 300, 630, 955, 999, 1087, 1551, 1646
Hpy188III TCNNGA 7 cut(s) 94, 200, 320, 709, 899, 988, 1199
Hpy8I GTNNAC 9 cut(s) 187, 220, 342, 379, 457, 478, 1063, 1369, 1525
Hpy99I CGWCG 1 cut(s) 1529
HpyAV CCTTC 6 cut(s) 145, 147, 270, 462, 1001, 1247
HpyCH4III ACNGT 5 cut(s) 749, 799, 1153, 1303, 1358
HpyCH4IV ACGT 1 cut(s) 840
HpyCH4V TGCA 7 cut(s) 520, 652, 686, 921, 929, 1115, 1472
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 221, 1333
HpyF3I CTNAG 9 cut(s) 58, 290, 299, 735, 900, 1057, 1341, 1514, 1548
HpySE526I ACGT 1 cut(s) 840
Ksp22I TGATCA 2 cut(s) 274, 625
Kzo9I GATC 8 cut(s) 28, 196, 274, 316, 351, 625, 691, 714
LguI GCTCTTC 2 cut(s) 198, 662
LmnI GCTCC 1 cut(s) 792
Lsp1109I GCAGC 7 cut(s) 595, 670, 855, 1333, 1484, 1495, 1597
LweI GCATC 4 cut(s) 276, 493, 507, 1102
MaeI CTAG 3 cut(s) 245, 491, 1532
MaeII ACGT 1 cut(s) 840
MaeIII GTNAC 3 cut(s) 443, 523, 914
MalI GATC 8 cut(s) 30, 198, 276, 318, 353, 627, 693, 716
MboI GATC 8 cut(s) 28, 196, 274, 316, 351, 625, 691, 714
MflI RGATCY 1 cut(s) 691
MhlI GDGCHC 3 cut(s) 635, 797, 1019
MluCI AATT 4 cut(s) 122, 587, 1106, 1127
MlyI GAGTC 2 cut(s) 174, 878
MmeI TCCRAC 2 cut(s) 141, 1416
MroXI GAANNNNTTC 7 cut(s) 207, 575, 671, 806, 1106, 1497, 1631
MseI TTAA 1 cut(s) 1295
MslI CAYNNNNRTG 3 cut(s) 386, 1076, 1136
MspA1I CMGCKG 1 cut(s) 1508
Mva1269I GAATGC 1 cut(s) 1162
MwoI GCNNNNNNNGC 3 cut(s) 110, 221, 1333
NcoI CCATGG 3 cut(s) 448, 965, 1575
NdeI CATATG 1 cut(s) 24
NdeII GATC 8 cut(s) 28, 196, 274, 316, 351, 625, 691, 714
NmeAIII GCCGAG 2 cut(s) 188, 1456
NmuCI GTSAC 1 cut(s) 523
NspI RCATGY 2 cut(s) 1327, 1592
PceI AGGCCT 1 cut(s) 472
PciSI GCTCTTC 2 cut(s) 198, 662
PctI GAATGC 1 cut(s) 1162
PdmI GAANNNNTTC 7 cut(s) 207, 575, 671, 806, 1106, 1497, 1631
PfeI GAWTC 5 cut(s) 777, 835, 1088, 1498, 1641
PflFI GACNNNGTC 1 cut(s) 1030
PkrI GCNGC 7 cut(s) 610, 685, 870, 1348, 1474, 1510, 1587
PleI GAGTC 2 cut(s) 173, 878
PpsI GAGTC 2 cut(s) 173, 878
PshAI GACNNNNGTC 1 cut(s) 960
PspEI GGTNACC 1 cut(s) 443
PspPI GGNCC 1 cut(s) 962
PstI CTGCAG 1 cut(s) 1474
PsuI RGATCY 1 cut(s) 691
PsyI GACNNNGTC 1 cut(s) 1030
RsaI GTAC 2 cut(s) 431, 551
RsaNI GTAC 2 cut(s) 430, 550
RseI CAYNNNNRTG 3 cut(s) 386, 1076, 1136
SalI GTCGAC 1 cut(s) 1523
SapI GCTCTTC 2 cut(s) 198, 662
SaqAI TTAA 1 cut(s) 1295
SatI GCNGC 7 cut(s) 609, 684, 869, 1347, 1473, 1509, 1586
Sau3AI GATC 8 cut(s) 28, 196, 274, 316, 351, 625, 691, 714
Sau96I GGNCC 1 cut(s) 962
ScaI AGTACT 1 cut(s) 431
SchI GAGTC 2 cut(s) 174, 878
SduI GDGCHC 3 cut(s) 635, 797, 1019
SfaNI GCATC 4 cut(s) 276, 493, 507, 1102
SfcI CTRYAG 1 cut(s) 1470
SinI GGWCC 1 cut(s) 962
SmiMI CAYNNNNRTG 3 cut(s) 386, 1076, 1136
SmlI CTYRAG 5 cut(s) 92, 320, 425, 438, 872
SmoI CTYRAG 5 cut(s) 92, 320, 425, 438, 872
Sse9I AATT 4 cut(s) 122, 587, 1106, 1127
SseBI AGGCCT 1 cut(s) 472
SsiI CCGC 2 cut(s) 828, 1506
SspMI CTAG 3 cut(s) 245, 491, 1532
StuI AGGCCT 1 cut(s) 472
StyI CCWWGG 5 cut(s) 448, 965, 1019, 1328, 1575
TaaI ACNGT 5 cut(s) 749, 799, 1153, 1303, 1358
TaiI ACGT 1 cut(s) 843
TaqI TCGA 9 cut(s) 31, 151, 534, 717, 882, 1110, 1412, 1524, 1608
TasI AATT 4 cut(s) 122, 587, 1106, 1127
TatI WGTACW 1 cut(s) 429
TfiI GAWTC 5 cut(s) 777, 835, 1088, 1498, 1641
Tru1I TTAA 1 cut(s) 1295
Tru9I TTAA 1 cut(s) 1295
TscAI CASTG 3 cut(s) 802, 1065, 1345
TseFI GTSAC 1 cut(s) 523
TseI GCWGC 7 cut(s) 608, 683, 868, 1346, 1472, 1508, 1585
Tsp45I GTSAC 1 cut(s) 523
TspDTI ATGAA 6 cut(s) 81, 432, 745, 906, 1094, 1120
TspGWI ACGGA 3 cut(s) 20, 218, 1017
TspRI CASTG 3 cut(s) 802, 1065, 1345
Tth111I GACNNNGTC 1 cut(s) 1030
VpaK11BI GGWCC 1 cut(s) 962
XapI RAATTY 3 cut(s) 122, 1106, 1127
XceI RCATGY 2 cut(s) 1327, 1592
XcmI CCANNNNNNNNNTGG 1 cut(s) 1561
XmiI GTMKAC 1 cut(s) 1524
XmnI GAANNNNTTC 7 cut(s) 207, 575, 671, 806, 1106, 1497, 1631
XspI CTAG 3 cut(s) 245, 491, 1532
ZrmI AGTACT 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.