Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001414

Physical Location & Seq

Genomic Coordinates Reverse (-)

11003391 .. 11004055

Gene Structure 665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1062700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGATCCAGATGGTTCATAATGGCGAGGCCAAATGCCCGAGGAAGTCGTTATCCGGCATTGAAGAGAAGATTATCTCTGAAGATGAGAATGCATCCTCAAAGGTTTCAATCGCCGACAAGGGCAATCAAGCCTATGAGTATGACAACTTTGCGCCAATGGTTGACAAGACTGTTGATGCAAATTGGCCTAAGTCAGTTCATTATGATAAATTTCCTACAGAAGGCTTCCCTGTGCATGATACTTGCAAGGCTCCTGGTGGACTAACCAATCAGTTACTGTCTGGACTCATGGTGTTCATCATGGGAATTGTCGCCATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008525 GO:0008526 GO:0008610 GO:0008654 GO:0009058 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019637 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032501 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044464 GO:0044703 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048193 GO:0048367 GO:0048468 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0061458 GO:0071702 GO:0071704 GO:0071840 GO:0090407 GO:0090567 GO:0097164 GO:0120009 GO:0120010 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

108

Amino Acids

11.73

Weight (kDa)

5.22

Isoelectric Point (pI)

24.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16380 AT2G16380 AT2G16380 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT4G34580 AT4G34580 AT4G39180 AT4G39180 AT4G39180
fragaria_vesca	FvH4_2g09420 FvH4_2g09420 FvH4_2g09420 FvH4_2g09490 FvH4_2g09490
malus_domestica	MD05G1062700.v1.1 MD05G1062800.v1.1 MD05G1062900.v1.1 MD10G1070400.v1.1 MD10G1070500.v1.1
prunus_persica	Prupe.8G092000_v2.0.a1 Prupe.8G092100_v2.0.a1 Prupe.8G092200_v2.0.a1
pyrus_communis	pycom05g05440 pycom10g05620 pycom10g05630
rosa_chinensis	RchiOBHm_Chr6g0265701 RchiOBHm_Chr6g0265771
rosa_laevigata	RLG00000014161 RLG00000014165
rosa_multiflora	Rmu_co8114364.1_g000001 Rmu_sc0000208.1_g000028 Rmu_sc0008535.1_g000015
rosa_roxburghii	Rroxscaffold_175G00432510 Rroxscaffold_175G00432560 Rroxscaffold_7G00202430
rosa_rugosa	Rorug06G0018500 Rorug06G0019000
rosa_samantha	Rh6AG140700 Rh6AG141500 Rh6BG141100 Rh6BG141400 Rh6CG137700 Rh6CG138000 Rh6DG124600 Rh6DG125000
rosa_wichuraiana	Rw6G012170 Rw6G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	2 cut(s)	62, 108
AjnI	CCWGG	1 cut(s)	253
AlwNI	CAGNNNCTG	1 cut(s)	277
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	2 cut(s)	27, 185
ApoI	RAATTY	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	37
BccI	CCATC	1 cut(s)	4
BciT130I	CCWGG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	255
BmeT110I	CYCGRG	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	2 cut(s)	101, 166
BsaJI	CCNNGG	2 cut(s)	38, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	38, 315
BseGI	GGATG	1 cut(s)	92
BseLI	CCNNNNNNNGG	1 cut(s)	221
BshFI	GGCC	2 cut(s)	29, 187
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	29, 187
BsoBI	CYCGRG	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	3
Bsp19I	CCATGG	1 cut(s)	315
BspANI	GGCC	2 cut(s)	29, 187
BspLI	GGNNCC	1 cut(s)	252
BssECI	CCNNGG	2 cut(s)	38, 315
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	172, 279
Bst6I	CTCTTC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	189
BstDSI	CCRYGG	1 cut(s)	315
BstENI	CCTNNNNNAGG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstSFI	CTRYAG	1 cut(s)	216
BsuRI	GGCC	2 cut(s)	29, 187
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	92
CaiI	CAGNNNCTG	1 cut(s)	277
CfoI	GCGC	1 cut(s)	154
CviAII	CATG	4 cut(s)	236, 289, 301, 316
CviJI	RGCY	5 cut(s)	29, 131, 187, 225, 251
CviKI_1	RGCY	5 cut(s)	29, 131, 187, 225, 251
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	99
Eco88I	CYCGRG	1 cut(s)	37
EcoNI	CCTNNNNNAGG	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	315
EcoT22I	ATGCAT	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	4 cut(s)	239, 292, 304, 319
FaiI	YATR	8 cut(s)	18, 135, 141, 204, 237, 290, 302, 317
FatI	CATG	4 cut(s)	235, 288, 300, 315
FokI	GGATG	1 cut(s)	79
GlaI	GCGC	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	29, 187
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	4 cut(s)	239, 292, 304, 319
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	1 cut(s)	285
HpaII	CCGG	1 cut(s)	54
Hpy166II	GTNNAC	2 cut(s)	163, 260
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	2 cut(s)	7, 282
Hpy8I	GTNNAC	2 cut(s)	163, 260
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	2 cut(s)	172, 279
HpyCH4V	TGCA	4 cut(s)	92, 179, 235, 246
HpyF3I	CTNAG	1 cut(s)	189
Hsp92II	CATG	4 cut(s)	239, 292, 304, 319
HspAI	GCGC	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	6 cut(s)	20, 67, 240, 243, 267, 267
LweI	GCATC	2 cut(s)	101, 166
MaeIII	GTNAC	1 cut(s)	273
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	74, 79, 92
MluCI	AATT	3 cut(s)	181, 209, 306
MlyI	GAGTC	1 cut(s)	279
MnlI	CCTC	3 cut(s)	19, 33, 106
Mph1103I	ATGCAT	1 cut(s)	94
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	255
NcoI	CCATGG	1 cut(s)	315
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	4 cut(s)	239, 292, 304, 319
NlaIV	GGNNCC	1 cut(s)	252
NsiI	ATGCAT	1 cut(s)	94
PctI	GAATGC	1 cut(s)	94
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	252
PstNI	CAGNNNCTG	1 cut(s)	277
Sau3AI	GATC	1 cut(s)	3
SchI	GAGTC	1 cut(s)	279
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	1 cut(s)	105
SfaNI	GCATC	2 cut(s)	101, 166
SfcI	CTRYAG	1 cut(s)	216
Sse9I	AATT	3 cut(s)	181, 209, 306
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	172, 279
TasI	AATT	3 cut(s)	181, 209, 306
TspDTI	ATGAA	3 cut(s)	5, 188, 286
XagI	CCTNNNNNAGG	1 cut(s)	219
XapI	RAATTY	1 cut(s)	209
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.