AT4G34580

Phosphatidylinositol phosphatidylcholine transfer protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
16515102 .. 16518746
3645 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G34580.2

Sequence Viewer

Length: 1665 bp
ATGGCTGAGACCAAACCTGAAATAGAGATGTCGGAGGAAGAGAGGAAGATAGTGAAGATAAGCTCGCTGAAGAAGAAAGCGATAAATGCATCCAACAGATTCAAGAACTCCTTCAAGAAAAAAGGTCGGAGAAGCAGCAGCAGAGTCATGTCCGTTCCGATTGAGGACGACATTGACGCAGAAGATCTTCAAGCTCTTGATGCTTTTCGTCAAGCTCTTATCCTTGACGAGCTTTTGCCATCCAAACTCGATGATCTCCACATGATGCTTCGATTTTTGAGAGCAAGAAAGTTTGACATTGAGAAAGCTAAGCAAATGTGGAGTGACATGATCCAATGGAGGAAAGATTTCGGCGCTGACACAATCATTGAGGATTTTGATTTCGAAGAAATTGATGAAGTGATGAAGCACTACCCTCAAGGCTATCATGGAGTTGACAAGGAAGGCAGACCAGTTTACATTGAGAGACTAGGTCAAATCGATGCTAACAAGCTACTCCAAGTGACAACAATGGACCGGTACGTGAAATATCATGTCAAAGAGTTCGAGAAGACTTTCAAGGTCAAGTTCCCTTCTTGTTCTGTAGCAGCAAATAAACACATTGATCAGAGCACAACAATTCTTGACGTGCAAGGCGTGGGTCTTAAGAACTTCAGCAAATCTGCAAGAGAGCTTCTTCAAAGGCTTTGCAAGATTGACAATGAAAATTACCCTGAGACTTTGAACCGGATGTTTATCATCAATGCTGGTTCTGGATTCCGGCTCTTGTGGAGCACAGTTAAGTCGTTTCTTGATCCCAAGACCACAGCAAAGATTCATGTTCTTGGGAACAAATATCATAGCAAATTGCTCGAGGTCATCGATGCTAGTGAATTGCCTGAGTTCTTTGGAGGTGCTTGCACTTGTGAAGACAAAGGAGGTTGTATGCGCTCTGACAAAGGTCCATGGAATGATCCTGAAGTTCTCAAGATCGCTATAAACCGTGAAGCTAAGTGTTCACCGATTTCAGAAGATGAACACAAGCATGTAGACCAAGGAAGATCAACTTCAGGTTTCGAAAGTCTTGAGAGAATCAAGAAGAAAACCGATGAAGATAATGTGTATGAGAAGCAAATTGCAACCATTGACAAGTCAATGGATATGGCATGGCTTGCCAAAACTCAGAAAGCTGAAAACTTTCCAATCTCTAAAGGGTTAGAGTGCTATGTTAGGAAAGGGGCACCCAAGAAAGGAGATGGATTACTTGTGGGAGGGGTCATGGCCTTTGTGATGGGAATAGTTGCAATGGTTAGGCTATCAAAAGACGTTCCACGCAAACTCACCGAGGCTGCTTTATATGGAAACTCAGTCTGTTATGAGGAATCTACAAAGTCTAAGCAGAATCAAGGTCAATTCGCAGCACCAGTCTCGAGCTCTGAATATATGTTGATGGTGAAACGTATGGCTGAGCTGGAAGATAAGTGCATGTTCCTTGACTTGAAACCTGCTCATGTCGAATCTGAGAAAGAAGAGAAACTTCAGGCCGCGCTTAATCGCGTTCAAGTGCTTGAGCAAGAGTTGACTGAGACCAAGAAGGCTTTGGAAGAAGCACTTGTGAGCCAGAAGGAGATTTTGGCATACATCGAGAAAAAGAAGAAGAAGAAGAAGCTGTTTTTCGGATTCTAA

Protein Analysis

554

Amino Acids

63.29

Weight (kDa)

8.44

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_N PF03765 87 - 108 5.1e-07 CRAL/TRIO, N-terminal domain
CRAL_TRIO PF00650 136 - 298 7e-33 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1492
AccB1I GGYRCC 1 cut(s) 1219
AccI GTMKAC 1 cut(s) 1029
AccII CGCG 2 cut(s) 1526, 1536
AciI CCGC 1 cut(s) 1524
AclWI GGATC 3 cut(s) 325, 788, 947
AcuI CTGAAG 5 cut(s) 89, 637, 978, 1032, 1502
AfaI GTAC 1 cut(s) 521
AfiI CCNNNNNNNGG 1 cut(s) 1229
AflII CTTAAG 1 cut(s) 644
AgeI ACCGGT 1 cut(s) 516
AgsI TTSAA 8 cut(s) 103, 115, 191, 559, 680, 724, 1480, 1541
AjiI CACGTC 1 cut(s) 628
AjuI GAANNNNNNNTTGG 2 cut(s) 1595, 1627
Alw21I GWGCWC 3 cut(s) 614, 776, 1415
Alw26I GTCTC 5 cut(s) 2, 460, 710, 1411, 1559
AlwI GGATC 3 cut(s) 325, 788, 947
Ama87I CYCGRG 2 cut(s) 851, 1408
AoxI GGCC 2 cut(s) 1260, 1521
ApeKI GCWGC 5 cut(s) 135, 138, 587, 1328, 1397
AsiGI ACCGGT 1 cut(s) 516
Asp700I GAANNNNTTC 5 cut(s) 110, 186, 347, 554, 1176
AspLEI GCGC 3 cut(s) 356, 930, 1528
AspS9I GGNCC 2 cut(s) 514, 941
AsuHPI GGTGA 3 cut(s) 990, 1312, 1444
AsuII TTCGAA 2 cut(s) 384, 1056
AvaI CYCGRG 2 cut(s) 851, 1408
AvaII GGWCC 2 cut(s) 514, 941
BaeGI GKGCMC 1 cut(s) 1222
BanI GGYRCC 1 cut(s) 1219
BanII GRGCYC 1 cut(s) 1415
BbsI GAAGAC 2 cut(s) 557, 915
Bbv12I GWGCWC 3 cut(s) 614, 776, 1415
BbvI GCAGC 5 cut(s) 147, 150, 599, 1315, 1409
BccI CCATC 4 cut(s) 247, 1229, 1264, 1423
BcgI CGANNNNNNTGC 4 cut(s) 832, 866, 1389, 1423
BclI TGATCA 1 cut(s) 604
BcoDI GTCTC 5 cut(s) 2, 460, 710, 1411, 1559
BfaI CTAG 2 cut(s) 470, 867
BfmI CTRYAG 1 cut(s) 582
BfoI RGCGCY 1 cut(s) 357
BfrI CTTAAG 1 cut(s) 644
BfuAI ACCTGC 1 cut(s) 1492
BglII AGATCT 1 cut(s) 184
BisI GCNGC 6 cut(s) 136, 139, 588, 1329, 1398, 1524
BlpI GCTNAGC 2 cut(s) 309, 1446
BlsI GCNGC 6 cut(s) 137, 140, 589, 1330, 1399, 1525
Bme18I GGWCC 2 cut(s) 514, 941
BmeT110I CYCGRG 2 cut(s) 851, 1408
BmgBI CACGTC 1 cut(s) 628
BmgT120I GGNCC 2 cut(s) 514, 941
BmiI GGNNCC 1 cut(s) 1221
BmsI GCATC 5 cut(s) 98, 190, 255, 472, 853
BoxI GACNNNNGTC 1 cut(s) 939
BpiI GAAGAC 2 cut(s) 557, 915
Bpu1102I GCTNAGC 2 cut(s) 309, 1446
Bpu14I TTCGAA 2 cut(s) 384, 1056
BpuEI CTTGAG 4 cut(s) 402, 950, 1085, 1568
Bsa29I ATCGAT 2 cut(s) 480, 861
BsaAI YACGTR 1 cut(s) 523
BsaBI GATNNNNATC 1 cut(s) 734
BsaI GGTCTC 2 cut(s) 2, 1559
BsaJI CCNNGG 3 cut(s) 944, 1033, 1323
BsaWI WCCGGW 2 cut(s) 516, 726
Bsc4I CCNNNNNNNGG 1 cut(s) 1229
Bse118I RCCGGY 1 cut(s) 516
Bse1I ACTGG 2 cut(s) 452, 1403
Bse3DI GCAATG 1 cut(s) 1290
Bse8I GATNNNNATC 1 cut(s) 734
BseCI ATCGAT 2 cut(s) 480, 861
BseDI CCNNGG 3 cut(s) 944, 1033, 1323
BseGI GGATG 3 cut(s) 89, 239, 735
BseJI GATNNNNATC 1 cut(s) 734
BseLI CCNNNNNNNGG 1 cut(s) 1229
BseMI GCAATG 1 cut(s) 1290
BseMII CTCAG 7 cut(s) 705, 870, 1175, 1359, 1437, 1491, 1554
BseNI ACTGG 2 cut(s) 452, 1403
BseSI GKGCMC 1 cut(s) 1222
BseXI GCAGC 5 cut(s) 147, 150, 599, 1315, 1409
Bsh1236I CGCG 2 cut(s) 1526, 1536
BshFI GGCC 2 cut(s) 1262, 1523
BshNI GGYRCC 1 cut(s) 1219
BshTI ACCGGT 1 cut(s) 516
BshVI ATCGAT 2 cut(s) 480, 861
BsiHKAI GWGCWC 3 cut(s) 614, 776, 1415
BsiHKCI CYCGRG 2 cut(s) 851, 1408
BsiSI CCGG 3 cut(s) 517, 727, 760
BslI CCNNNNNNNGG 1 cut(s) 1229
BsmAI GTCTC 5 cut(s) 2, 460, 710, 1411, 1559
BsnI GGCC 2 cut(s) 1262, 1523
Bso31I GGTCTC 2 cut(s) 2, 1559
BsoBI CYCGRG 2 cut(s) 851, 1408
Bsp119I TTCGAA 2 cut(s) 384, 1056
Bsp1286I GDGCHC 4 cut(s) 614, 776, 1222, 1415
Bsp143I GATC 8 cut(s) 184, 253, 330, 604, 793, 952, 969, 1040
Bsp1720I GCTNAGC 2 cut(s) 309, 1446
Bsp19I CCATGG 1 cut(s) 944
BspACI CCGC 1 cut(s) 1524
BspANI GGCC 2 cut(s) 1262, 1523
BspCNI CTCAG 7 cut(s) 706, 871, 1174, 1358, 1438, 1492, 1555
BspDI ATCGAT 2 cut(s) 480, 861
BspFNI CGCG 2 cut(s) 1526, 1536
BspLI GGNNCC 1 cut(s) 1221
BspMI ACCTGC 1 cut(s) 1492
BspPI GGATC 3 cut(s) 325, 788, 947
BspT104I TTCGAA 2 cut(s) 384, 1056
BspT107I GGYRCC 1 cut(s) 1219
BspTI CTTAAG 1 cut(s) 644
BspTNI GGTCTC 2 cut(s) 2, 1559
BsrDI GCAATG 1 cut(s) 1290
BsrFI RCCGGY 1 cut(s) 516
BsrI ACTGG 2 cut(s) 452, 1403
BssAI RCCGGY 1 cut(s) 516
BssECI CCNNGG 3 cut(s) 944, 1033, 1323
BssMI GATC 8 cut(s) 184, 253, 330, 604, 793, 952, 969, 1040
BssT1I CCWWGG 2 cut(s) 944, 1033
Bst4CI ACNGT 2 cut(s) 778, 983
Bst6I CTCTTC 2 cut(s) 33, 1503
BstAFI CTTAAG 1 cut(s) 644
BstAPI GCANNNNNTGC 1 cut(s) 1151
BstBAI YACGTR 1 cut(s) 523
BstBI TTCGAA 2 cut(s) 384, 1056
BstC8I GCNNGC 3 cut(s) 65, 898, 1152
BstDSI CCRYGG 1 cut(s) 944
BstF5I GGATG 3 cut(s) 89, 239, 735
BstFNI CGCG 2 cut(s) 1526, 1536
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 3 cut(s) 356, 930, 1528
BstKTI GATC 8 cut(s) 187, 256, 333, 607, 796, 955, 972, 1043
BstMAI GTCTC 5 cut(s) 2, 460, 710, 1411, 1559
BstMBI GATC 8 cut(s) 184, 253, 330, 604, 793, 952, 969, 1040
BstMWI GCNNNNNNNGC 3 cut(s) 86, 200, 1151
BstNSI RCATGY 2 cut(s) 1028, 1468
BstPAI GACNNNNGTC 1 cut(s) 939
BstSFI CTRYAG 1 cut(s) 582
BstSLI GKGCMC 1 cut(s) 1222
BstUI CGCG 2 cut(s) 1526, 1536
BstV1I GCAGC 5 cut(s) 147, 150, 599, 1315, 1409
BstV2I GAAGAC 2 cut(s) 557, 915
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
Bsu15I ATCGAT 2 cut(s) 480, 861
BsuRI GGCC 2 cut(s) 1262, 1523
BsuTUI ATCGAT 2 cut(s) 480, 861
BtgI CCRYGG 1 cut(s) 944
BtrI CACGTC 1 cut(s) 628
BtsCI GGATG 3 cut(s) 89, 239, 735
BveI ACCTGC 1 cut(s) 1492
Cac8I GCNNGC 3 cut(s) 65, 898, 1152
CfoI GCGC 3 cut(s) 356, 930, 1528
Cfr10I RCCGGY 1 cut(s) 516
Cfr13I GGNCC 2 cut(s) 514, 941
ClaI ATCGAT 2 cut(s) 480, 861
CseI GACGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 520
CspAI ACCGGT 1 cut(s) 516
CviQI GTAC 1 cut(s) 520
DpnI GATC 8 cut(s) 186, 255, 332, 606, 795, 954, 971, 1042
DpnII GATC 8 cut(s) 184, 253, 330, 604, 793, 952, 969, 1040
Eam1104I CTCTTC 2 cut(s) 33, 1503
EarI CTCTTC 2 cut(s) 33, 1503
Ecl136II GAGCTC 1 cut(s) 1413
Eco130I CCWWGG 2 cut(s) 944, 1033
Eco24I GRGCYC 1 cut(s) 1415
Eco31I GGTCTC 2 cut(s) 2, 1559
Eco47I GGWCC 2 cut(s) 514, 941
Eco53kI GAGCTC 1 cut(s) 1413
Eco57I CTGAAG 5 cut(s) 89, 637, 978, 1032, 1502
Eco88I CYCGRG 2 cut(s) 851, 1408
EcoICRI GAGCTC 1 cut(s) 1413
EcoT14I CCWWGG 2 cut(s) 944, 1033
EcoT22I ATGCAT 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 1415
ErhI CCWWGG 2 cut(s) 944, 1033
FalI AAGNNNNNCTT 8 cut(s) 95, 127, 1030, 1062, 1500, 1532, 1575, 1607
FbaI TGATCA 1 cut(s) 604
FblI GTMKAC 1 cut(s) 1029
Fnu4HI GCNGC 6 cut(s) 136, 139, 588, 1329, 1398, 1524
FokI GGATG 3 cut(s) 76, 226, 742
FriOI GRGCYC 1 cut(s) 1415
Fsp4HI GCNGC 6 cut(s) 136, 139, 588, 1329, 1398, 1524
FspBI CTAG 2 cut(s) 470, 867
GlaI GCGC 3 cut(s) 355, 929, 1527
GluI GCNGC 6 cut(s) 136, 139, 588, 1329, 1398, 1524
HaeII RGCGCY 1 cut(s) 357
HaeIII GGCC 2 cut(s) 1262, 1523
HapII CCGG 3 cut(s) 517, 727, 760
HgaI GACGC 1 cut(s) 185
HhaI GCGC 3 cut(s) 356, 930, 1528
Hin6I GCGC 3 cut(s) 354, 928, 1526
HinP1I GCGC 3 cut(s) 354, 928, 1526
HincII GTYRAC 2 cut(s) 436, 1560
HindII GTYRAC 2 cut(s) 436, 1560
HinfI GANTC 9 cut(s) 99, 144, 756, 814, 1071, 1361, 1381, 1496, 1659
HpaII CCGG 3 cut(s) 517, 727, 760
HphI GGTGA 3 cut(s) 990, 1312, 1444
Hpy166II GTNNAC 5 cut(s) 436, 457, 998, 1030, 1560
Hpy8I GTNNAC 5 cut(s) 436, 457, 998, 1030, 1560
HpyAV CCTTC 5 cut(s) 121, 437, 582, 1567, 1597
HpyCH4III ACNGT 2 cut(s) 778, 983
HpyCH4IV ACGT 4 cut(s) 522, 627, 1305, 1438
HpyCH4V TGCA 8 cut(s) 89, 631, 665, 690, 900, 1118, 1283, 1464
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 200, 1151
HpySE526I ACGT 4 cut(s) 522, 627, 1305, 1438
HspAI GCGC 3 cut(s) 354, 928, 1526
Ksp22I TGATCA 1 cut(s) 604
Kzo9I GATC 8 cut(s) 184, 253, 330, 604, 793, 952, 969, 1040
LmnI GCTCC 1 cut(s) 771
Lsp1109I GCAGC 5 cut(s) 147, 150, 599, 1315, 1409
LweI GCATC 5 cut(s) 98, 190, 255, 472, 853
MaeI CTAG 2 cut(s) 470, 867
MaeII ACGT 4 cut(s) 522, 627, 1305, 1438
MaeIII GTNAC 2 cut(s) 323, 502
MalI GATC 8 cut(s) 186, 255, 332, 606, 795, 954, 971, 1042
MboI GATC 8 cut(s) 184, 253, 330, 604, 793, 952, 969, 1040
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 4 cut(s) 614, 776, 1222, 1415
MluCI AATT 7 cut(s) 390, 618, 706, 845, 872, 1113, 1391
MlyI GAGTC 1 cut(s) 153
MmeI TCCRAC 3 cut(s) 12, 107, 117
Mph1103I ATGCAT 1 cut(s) 91
MroXI GAANNNNTTC 5 cut(s) 110, 186, 347, 554, 1176
MseI TTAA 3 cut(s) 645, 780, 1530
MslI CAYNNNNRTG 1 cut(s) 1023
MspCI CTTAAG 1 cut(s) 644
MspI CCGG 3 cut(s) 517, 727, 760
MvnI CGCG 2 cut(s) 1526, 1536
MwoI GCNNNNNNNGC 3 cut(s) 86, 200, 1151
NcoI CCATGG 1 cut(s) 944
NdeII GATC 8 cut(s) 184, 253, 330, 604, 793, 952, 969, 1040
NlaIV GGNNCC 1 cut(s) 1221
NmuCI GTSAC 2 cut(s) 323, 502
NsiI ATGCAT 1 cut(s) 91
NspI RCATGY 2 cut(s) 1028, 1468
NspV TTCGAA 2 cut(s) 384, 1056
PaeR7I CTCGAG 2 cut(s) 851, 1408
PcsI WCGNNNNNNNCGW 2 cut(s) 633, 858
PdmI GAANNNNTTC 5 cut(s) 110, 186, 347, 554, 1176
PfeI GAWTC 8 cut(s) 99, 756, 814, 1071, 1361, 1381, 1496, 1659
PflFI GACNNNGTC 1 cut(s) 471
PinAI ACCGGT 1 cut(s) 516
PkrI GCNGC 6 cut(s) 137, 140, 589, 1330, 1399, 1525
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
Ppu21I YACGTR 1 cut(s) 523
PshAI GACNNNNGTC 1 cut(s) 939
Psp124BI GAGCTC 1 cut(s) 1415
PspN4I GGNNCC 1 cut(s) 1221
PspPI GGNCC 2 cut(s) 514, 941
PspXI VCTCGAGB 1 cut(s) 851
PsuI RGATCY 1 cut(s) 184
PsyI GACNNNGTC 1 cut(s) 471
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
RseI CAYNNNNRTG 1 cut(s) 1023
SacI GAGCTC 1 cut(s) 1415
SaqAI TTAA 3 cut(s) 645, 780, 1530
SatI GCNGC 6 cut(s) 136, 139, 588, 1329, 1398, 1524
Sau3AI GATC 8 cut(s) 184, 253, 330, 604, 793, 952, 969, 1040
Sau96I GGNCC 2 cut(s) 514, 941
SchI GAGTC 1 cut(s) 153
SduI GDGCHC 4 cut(s) 614, 776, 1222, 1415
SfaNI GCATC 5 cut(s) 98, 190, 255, 472, 853
SfcI CTRYAG 1 cut(s) 582
Sfr274I CTCGAG 2 cut(s) 851, 1408
SfuI TTCGAA 2 cut(s) 384, 1056
SinI GGWCC 2 cut(s) 514, 941
SlaI CTCGAG 2 cut(s) 851, 1408
SmiMI CAYNNNNRTG 1 cut(s) 1023
SmlI CTYRAG 7 cut(s) 417, 644, 851, 965, 1064, 1408, 1547
SmoI CTYRAG 7 cut(s) 417, 644, 851, 965, 1064, 1408, 1547
Sse9I AATT 7 cut(s) 390, 618, 706, 845, 872, 1113, 1391
SsiI CCGC 1 cut(s) 1524
SspMI CTAG 2 cut(s) 470, 867
SstI GAGCTC 1 cut(s) 1415
StyI CCWWGG 2 cut(s) 944, 1033
TaaI ACNGT 2 cut(s) 778, 983
TaiI ACGT 4 cut(s) 525, 630, 1308, 1441
TasI AATT 7 cut(s) 390, 618, 706, 845, 872, 1113, 1391
TauI GCSGC 1 cut(s) 1526
TfiI GAWTC 8 cut(s) 99, 756, 814, 1071, 1361, 1381, 1496, 1659
Tru1I TTAA 3 cut(s) 645, 780, 1530
Tru9I TTAA 3 cut(s) 645, 780, 1530
TseFI GTSAC 2 cut(s) 323, 502
TseI GCWGC 5 cut(s) 135, 138, 587, 1328, 1397
Tsp45I GTSAC 2 cut(s) 323, 502
TspDTI ATGAA 6 cut(s) 411, 419, 717, 806, 1029, 1104
TspGWI ACGGA 1 cut(s) 142
Tth111I GACNNNGTC 1 cut(s) 471
Vha464I CTTAAG 1 cut(s) 644
VpaK11BI GGWCC 2 cut(s) 514, 941
XceI RCATGY 2 cut(s) 1028, 1468
XcmI CCANNNNNNNNNTGG 1 cut(s) 1576
XhoI CTCGAG 2 cut(s) 851, 1408
XmiI GTMKAC 1 cut(s) 1029
XmnI GAANNNNTTC 5 cut(s) 110, 186, 347, 554, 1176
XspI CTAG 2 cut(s) 470, 867
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.