Rh6AG141500

Phosphatidylinositol phosphatidylcholine transfer protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
21957704 .. 21962332
4629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG141500.1

Sequence Viewer

Length: 1764 bp
ATGTGTGACACCATGTCTGGACCTCATGACCGACACCTAAAACCTGTCCCTGAAGAAAACTCTGAGGAGGAAAGGAAAACAAGGCTTGGGTCTCTTAAGCAGAAGGCAATTAATGCCTCCACCAAGTTTAGGCATTCGTTTACAAAGAAGGGTCGAAGGAACAGTAAGGTAATGTCTGTCCCTATTGAGGACAACATTAATGCGGAGGAATTACAGGCAGTGGACGCATTCCGCCAAGCACTTATCTTGGAAGAACTATTGCCCTCAAAACATGACGATCATCATCTGATGCTAAGATTTTTAAGGGCCAGGAAATTTGACATTGAGAAAGCAAAGCAGATGTGGACTGATATGCTTCAATGGAGGAAGGAATTTGGTGCTGACACTATTATGGAGGAATTTGAATACAAGGAAATTGATGAGGTTTTGAAATACTATCCCCAAGGCCATCATGGAGTTGATAAGGAGGGAAGACCTGTCTACATTGAGAGACTTGGTCAAGTGGATTCAACCAAGCTGATGCAAGTCACAACAATGGACCGTTATGTAAAATACCATGTACGGGAGTTTGAGAGGACCTTCGTCCATAAATTCCCTGCATGTTCCATTGCAGCTAAGAAGCACATTGATCAGAGCACCACTATTCTTGATGTACAAGGAGTGGGGCTTAAAAATTTCAATAAATCTGCGAGGGAACTTATTCAGTGCCTTCAGAAGATTGATGGCGACAATTATCCTGAGACCTTGAACCGTATGTTCATCATTAATGCTGGTTCTGGATTTAGGCTTTTATGGAACACTGTCAAATCTTTCCTTGATCCCAAGACCACTGCAAAAATCAATGTTCTTGGAAACAAATACCAGAGCAAGTTGCTTGAAATAATTGATGCTAGTGAGCTGCCAGAGTTTTTGGGTGGCACTTGTACTTGTGCAGACAAGGGTGGTTGCATGCGTTCCGATAAAGGCCCATGGAATGACCCAGATATAATGAAGATGGTTCACAATGGTGAGGGCAAATGCACAAGGAGAACATTATCAGGCATTGAGGAGAAGATAATCTCTGAAGATGAAATGTTTTACTCCAAGACATGTGATTCTTTCAACTCAAAAATAGCTCAAATGGAACATACAAAACTCTCTCAAGTTCCTAAACAAGTTTCATTCACCAAAAAATCCAGTAAGGCCTATGAGTATGACAAGTTGATGCCAATGGTTGACAAGACCGTGGATGCAACTTGGGCTAAACCAGTTCATTATGATAAATTTGCCCACAGTCAAGCTACAGATTGCTTCCCCTCGCATAATGCTTGCAAGTCTTCTGAAGGACTAAGCAGTTACTTACTTTCTGGAATCATGGCCTTCATCATGGGAATTGTCACCATGATCCGATTGACACGAGACATGCCAAGGAAACTCACTGAGGCAGCCCTATATGGAAGCCCTGCTTACTGCAATGGAATGGGGATGAAAGCCAAGCAGTTGCCTGCATCATCCATCTCCAGTGACACATACATGAACATGATGAAGCGCATGGCCGAGTTGGAGGAGAAAGTGAAAGTTCTCAGCACGAAACCAACTATCATGCCCCCTGAGAAAGAGGAAATGTTGAACAATGCTCTCAACCGAGCCACAGCCTTGGAACAAGAGCTTTCAGCAACCAAGAAGGCACTTGATGACGCCCTGGTCCGACAGAATGAGCTTATAGCCTACCTTGATAAGAAGAAAAAGAAGAAGAAACTGAAATTGAACCCATTTAAATGGTAA

Protein Analysis

587

Amino Acids

67.17

Weight (kDa)

9.0

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_N PF03765 90 - 117 1.2e-08 CRAL/TRIO, N-terminal domain
CRAL_TRIO PF00650 144 - 306 1.8e-31 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1682
AccI GTMKAC 1 cut(s) 480
AciI CCGC 2 cut(s) 203, 232
AclWI GGATC 2 cut(s) 812, 1378
AcoI YGGCCR 1 cut(s) 1533
AcsI RAATTY 6 cut(s) 314, 371, 398, 590, 673, 1262
AcuI CTGAAG 4 cut(s) 72, 695, 1083, 1341
AcyI GRCGYC 1 cut(s) 1677
AfaI GTAC 3 cut(s) 561, 654, 925
AfiI CCNNNNNNNGG 3 cut(s) 129, 187, 562
AflII CTTAAG 1 cut(s) 95
AflIII ACRYGT 1 cut(s) 1088
AhdI GACNNNNNGTC 1 cut(s) 13
AjnI CCWGG 2 cut(s) 308, 1680
AleI CACNNNNGTG 1 cut(s) 1005
AluBI AGCT 7 cut(s) 517, 614, 898, 1115, 1280, 1648, 1699
AluI AGCT 7 cut(s) 517, 614, 898, 1115, 1280, 1648, 1699
Alw21I GWGCWC 1 cut(s) 638
Alw26I GTCTC 4 cut(s) 96, 484, 734, 1392
AlwI GGATC 2 cut(s) 812, 1378
AoxI GGCC 6 cut(s) 306, 445, 964, 1182, 1356, 1533
ApeKI GCWGC 3 cut(s) 611, 898, 1424
ApoI RAATTY 6 cut(s) 314, 371, 398, 590, 673, 1262
AseI ATTAAT 3 cut(s) 111, 198, 765
Asp700I GAANNNNTTC 1 cut(s) 699
AspLEI GCGC 1 cut(s) 1530
AspS9I GGNCC 6 cut(s) 20, 306, 538, 576, 965, 1684
AsuHPI GGTGA 3 cut(s) 1019, 1156, 1369
AvaII GGWCC 4 cut(s) 20, 538, 576, 1684
BauI CACGAG 1 cut(s) 1395
BbsI GAAGAC 2 cut(s) 478, 1308
Bbv12I GWGCWC 1 cut(s) 638
BbvI GCAGC 3 cut(s) 623, 885, 1436
BccI CCATC 4 cut(s) 456, 716, 988, 1502
BciT130I CCWGG 2 cut(s) 310, 1682
BclI TGATCA 1 cut(s) 628
BcoDI GTCTC 4 cut(s) 96, 484, 734, 1392
BfaI CTAG 1 cut(s) 891
BfmI CTRYAG 1 cut(s) 1281
BfrI CTTAAG 1 cut(s) 95
BisI GCNGC 3 cut(s) 612, 899, 1425
BlsI GCNGC 3 cut(s) 613, 900, 1426
Bme1390I CCNGG 2 cut(s) 310, 1682
Bme18I GGWCC 4 cut(s) 20, 538, 576, 1684
BmeRI GACNNNNNGTC 1 cut(s) 13
BmgT120I GGNCC 6 cut(s) 20, 306, 538, 576, 965, 1684
BmrFI CCNGG 2 cut(s) 310, 1682
BmsI GCATC 6 cut(s) 279, 510, 877, 1194, 1219, 1496
BoxI GACNNNNGTC 1 cut(s) 581
BpiI GAAGAC 2 cut(s) 478, 1308
BpmI CTGGAG 1 cut(s) 1483
BpuEI CTTGAG 1 cut(s) 1125
BsaBI GATNNNNATC 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 1677
BsaI GGTCTC 2 cut(s) 96, 734
BsaJI CCNNGG 6 cut(s) 442, 968, 1224, 1406, 1635, 1680
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 187, 562
Bse1I ACTGG 3 cut(s) 1176, 1247, 1500
Bse3DI GCAATG 2 cut(s) 606, 1459
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 2 cut(s) 310, 1682
BseDI CCNNGG 6 cut(s) 442, 968, 1224, 1406, 1635, 1680
BseGI GGATG 3 cut(s) 1234, 1470, 1490
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 3 cut(s) 129, 187, 562
BseMI GCAATG 2 cut(s) 606, 1459
BseMII CTCAG 5 cut(s) 54, 729, 1410, 1576, 1581
BseNI ACTGG 3 cut(s) 1176, 1247, 1500
BseRI GAGGAG 3 cut(s) 80, 1061, 1559
BseXI GCAGC 3 cut(s) 623, 885, 1436
BsgI GTGCAG 1 cut(s) 951
BshFI GGCC 6 cut(s) 308, 447, 966, 1184, 1358, 1535
BsiHKAI GWGCWC 1 cut(s) 638
BslFI GGGAC 2 cut(s) 32, 164
BslI CCNNNNNNNGG 3 cut(s) 129, 187, 562
BsmAI GTCTC 4 cut(s) 96, 484, 734, 1392
BsmFI GGGAC 2 cut(s) 32, 164
BsmI GAATGC 2 cut(s) 133, 227
BsnI GGCC 6 cut(s) 308, 447, 966, 1184, 1358, 1535
Bso31I GGTCTC 2 cut(s) 96, 734
Bsp1286I GDGCHC 1 cut(s) 638
Bsp1407I TGTACA 1 cut(s) 652
Bsp143I GATC 4 cut(s) 277, 628, 817, 1383
Bsp19I CCATGG 1 cut(s) 968
BspACI CCGC 2 cut(s) 203, 232
BspANI GGCC 6 cut(s) 308, 447, 966, 1184, 1358, 1535
BspCNI CTCAG 5 cut(s) 55, 730, 1411, 1575, 1582
BspHI TCATGA 1 cut(s) 25
BspPI GGATC 2 cut(s) 812, 1378
BspTI CTTAAG 1 cut(s) 95
BspTNI GGTCTC 2 cut(s) 96, 734
BsrDI GCAATG 2 cut(s) 606, 1459
BsrGI TGTACA 1 cut(s) 652
BsrI ACTGG 3 cut(s) 1176, 1247, 1500
BssECI CCNNGG 6 cut(s) 442, 968, 1224, 1406, 1635, 1680
BssMI GATC 4 cut(s) 277, 628, 817, 1383
BssNI GRCGYC 1 cut(s) 1677
BssSI CACGAG 1 cut(s) 1395
BssT1I CCWWGG 4 cut(s) 442, 968, 1406, 1635
Bst2BI CACGAG 1 cut(s) 1395
Bst2UI CCWGG 2 cut(s) 310, 1682
Bst4CI ACNGT 6 cut(s) 164, 542, 752, 802, 1225, 1274
BstACI GRCGYC 1 cut(s) 1677
BstAFI CTTAAG 1 cut(s) 95
BstAPI GCANNNNNTGC 1 cut(s) 113
BstAUI TGTACA 1 cut(s) 652
BstC8I GCNNGC 3 cut(s) 950, 1309, 1485
BstDEI CTNAG 8 cut(s) 63, 293, 615, 738, 1328, 1419, 1562, 1590
BstDSI CCRYGG 2 cut(s) 968, 1224
BstF5I GGATG 3 cut(s) 1234, 1470, 1490
BstHHI GCGC 1 cut(s) 1530
BstKTI GATC 4 cut(s) 280, 631, 820, 1386
BstMAI GTCTC 4 cut(s) 96, 484, 734, 1392
BstMBI GATC 4 cut(s) 277, 628, 817, 1383
BstMWI GCNNNNNNNGC 3 cut(s) 113, 224, 1238
BstNI CCWGG 2 cut(s) 310, 1682
BstNSI RCATGY 4 cut(s) 603, 952, 1092, 1405
BstPAI GACNNNNGTC 1 cut(s) 581
BstSCI CCNGG 2 cut(s) 308, 1680
BstSFI CTRYAG 1 cut(s) 1281
BstV1I GCAGC 3 cut(s) 623, 885, 1436
BstV2I GAAGAC 2 cut(s) 478, 1308
BstXI CCANNNNNNTGG 2 cut(s) 1636, 1758
BsuRI GGCC 6 cut(s) 308, 447, 966, 1184, 1358, 1535
BtgI CCRYGG 2 cut(s) 968, 1224
BtsCI GGATG 3 cut(s) 1234, 1470, 1490
BtsI GCAGTG 2 cut(s) 225, 828
BtsIMutI CAGTG 6 cut(s) 225, 710, 798, 828, 1416, 1507
Cac8I GCNNGC 3 cut(s) 950, 1309, 1485
CciI TCATGA 1 cut(s) 25
CfoI GCGC 1 cut(s) 1530
Cfr13I GGNCC 6 cut(s) 20, 306, 538, 576, 965, 1684
CseI GACGC 2 cut(s) 233, 1685
Csp6I GTAC 3 cut(s) 560, 653, 924
CspCI CAANNNNNGTGG 2 cut(s) 628, 663
CviQI GTAC 3 cut(s) 560, 653, 924
DdeI CTNAG 8 cut(s) 63, 293, 615, 738, 1328, 1419, 1562, 1590
DpnI GATC 4 cut(s) 279, 630, 819, 1385
DpnII GATC 4 cut(s) 277, 628, 817, 1383
DraI TTTAAA 1 cut(s) 1756
DrdI GACNNNNNNGTC 1 cut(s) 1682
DriI GACNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 1682
EaeI YGGCCR 1 cut(s) 1533
Eam1105I GACNNNNNGTC 1 cut(s) 13
EciI GGCGGA 1 cut(s) 221
Eco130I CCWWGG 4 cut(s) 442, 968, 1406, 1635
Eco147I AGGCCT 1 cut(s) 1184
Eco31I GGTCTC 2 cut(s) 96, 734
Eco47I GGWCC 4 cut(s) 20, 538, 576, 1684
Eco57I CTGAAG 4 cut(s) 72, 695, 1083, 1341
EcoO109I RGGNCCY 1 cut(s) 576
EcoRII CCWGG 2 cut(s) 308, 1680
EcoT14I CCWWGG 4 cut(s) 442, 968, 1406, 1635
ErhI CCWWGG 4 cut(s) 442, 968, 1406, 1635
FalI AAGNNNNNCTT 2 cut(s) 1429, 1461
FaqI GGGAC 2 cut(s) 32, 164
FbaI TGATCA 1 cut(s) 628
FblI GTMKAC 1 cut(s) 480
Fnu4HI GCNGC 3 cut(s) 612, 899, 1425
FokI GGATG 3 cut(s) 1241, 1477, 1477
Fsp4HI GCNGC 3 cut(s) 612, 899, 1425
FspBI CTAG 1 cut(s) 891
GlaI GCGC 1 cut(s) 1529
GluI GCNGC 3 cut(s) 612, 899, 1425
GsuI CTGGAG 1 cut(s) 1483
HaeIII GGCC 6 cut(s) 308, 447, 966, 1184, 1358, 1535
HgaI GACGC 2 cut(s) 233, 1685
HhaI GCGC 1 cut(s) 1530
Hin1I GRCGYC 1 cut(s) 1677
Hin6I GCGC 1 cut(s) 1528
HinP1I GCGC 1 cut(s) 1528
HincII GTYRAC 1 cut(s) 1216
HindII GTYRAC 1 cut(s) 1216
HinfI GANTC 3 cut(s) 506, 1094, 1350
HphI GGTGA 3 cut(s) 1019, 1156, 1369
Hpy166II GTNNAC 6 cut(s) 141, 223, 345, 481, 1000, 1216
Hpy188I TCNGA 9 cut(s) 64, 288, 633, 714, 958, 1063, 1321, 1388, 1688
Hpy188III TCNNGA 6 cut(s) 18, 26, 647, 737, 777, 1347
Hpy8I GTNNAC 6 cut(s) 141, 223, 345, 481, 1000, 1216
HpyAV CCTTC 9 cut(s) 97, 142, 150, 361, 589, 719, 1316, 1369, 1657
HpyCH4III ACNGT 6 cut(s) 164, 542, 752, 802, 1225, 1274
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 224, 1238
HpyF3I CTNAG 8 cut(s) 63, 293, 615, 738, 1328, 1419, 1562, 1590
Hsp92I GRCGYC 1 cut(s) 1677
HspAI GCGC 1 cut(s) 1528
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 4 cut(s) 277, 628, 817, 1383
Lsp1109I GCAGC 3 cut(s) 623, 885, 1436
LweI GCATC 6 cut(s) 279, 510, 877, 1194, 1219, 1496
MaeI CTAG 1 cut(s) 891
MaeIII GTNAC 5 cut(s) 5, 526, 1334, 1375, 1502
MalI GATC 4 cut(s) 279, 630, 819, 1385
MboI GATC 4 cut(s) 277, 628, 817, 1383
MhlI GDGCHC 1 cut(s) 638
MmeI TCCRAC 2 cut(s) 1521, 1711
MroXI GAANNNNTTC 1 cut(s) 699
MseI TTAA 7 cut(s) 96, 111, 198, 302, 669, 765, 1755
MslI CAYNNNNRTG 6 cut(s) 389, 533, 1005, 1511, 1517, 1756
MspCI CTTAAG 1 cut(s) 95
MspR9I CCNGG 2 cut(s) 310, 1682
Mva1269I GAATGC 2 cut(s) 133, 227
MvaI CCWGG 2 cut(s) 310, 1682
MwoI GCNNNNNNNGC 3 cut(s) 113, 224, 1238
NcoI CCATGG 1 cut(s) 968
NdeII GATC 4 cut(s) 277, 628, 817, 1383
NmeAIII GCCGAG 1 cut(s) 1561
NmuCI GTSAC 4 cut(s) 5, 526, 1375, 1502
NspI RCATGY 4 cut(s) 603, 952, 1092, 1405
OliI CACNNNNGTG 1 cut(s) 1005
PaeI GCATGC 1 cut(s) 952
PagI TCATGA 1 cut(s) 25
PceI AGGCCT 1 cut(s) 1184
PciI ACATGT 1 cut(s) 1088
PctI GAATGC 2 cut(s) 133, 227
PdmI GAANNNNTTC 1 cut(s) 699
PfeI GAWTC 3 cut(s) 506, 1094, 1350
PflFI GACNNNGTC 1 cut(s) 495
PkrI GCNGC 3 cut(s) 613, 900, 1426
PpuMI RGGWCCY 1 cut(s) 576
PscI ACATGT 1 cut(s) 1088
PshAI GACNNNNGTC 1 cut(s) 581
PshBI ATTAAT 3 cut(s) 111, 198, 765
Psp5II RGGWCCY 1 cut(s) 576
Psp6I CCWGG 2 cut(s) 308, 1680
PspGI CCWGG 2 cut(s) 308, 1680
PspPI GGNCC 6 cut(s) 20, 306, 538, 576, 965, 1684
PspPPI RGGWCCY 1 cut(s) 576
PsyI GACNNNGTC 1 cut(s) 495
RsaI GTAC 3 cut(s) 561, 654, 925
RsaNI GTAC 3 cut(s) 560, 653, 924
RseI CAYNNNNRTG 6 cut(s) 389, 533, 1005, 1511, 1517, 1756
SaqAI TTAA 7 cut(s) 96, 111, 198, 302, 669, 765, 1755
SatI GCNGC 3 cut(s) 612, 899, 1425
Sau3AI GATC 4 cut(s) 277, 628, 817, 1383
Sau96I GGNCC 6 cut(s) 20, 306, 538, 576, 965, 1684
ScrFI CCNGG 2 cut(s) 310, 1682
SduI GDGCHC 1 cut(s) 638
SfaNI GCATC 6 cut(s) 279, 510, 877, 1194, 1219, 1496
SfcI CTRYAG 1 cut(s) 1281
SinI GGWCC 4 cut(s) 20, 538, 576, 1684
SmiI ATTTAAAT 1 cut(s) 1756
SmiMI CAYNNNNRTG 6 cut(s) 389, 533, 1005, 1511, 1517, 1756
SmlI CTYRAG 2 cut(s) 95, 1140
SmoI CTYRAG 2 cut(s) 95, 1140
SphI GCATGC 1 cut(s) 952
SseBI AGGCCT 1 cut(s) 1184
SsiI CCGC 2 cut(s) 203, 232
SspMI CTAG 1 cut(s) 891
StuI AGGCCT 1 cut(s) 1184
StyD4I CCNGG 2 cut(s) 308, 1680
StyI CCWWGG 4 cut(s) 442, 968, 1406, 1635
SwaI ATTTAAAT 1 cut(s) 1756
TaaI ACNGT 6 cut(s) 164, 542, 752, 802, 1225, 1274
TaqI TCGA 1 cut(s) 154
TaqII GACCGA 1 cut(s) 45
TatI WGTACW 2 cut(s) 652, 923
TfiI GAWTC 3 cut(s) 506, 1094, 1350
Tru1I TTAA 7 cut(s) 96, 111, 198, 302, 669, 765, 1755
Tru9I TTAA 7 cut(s) 96, 111, 198, 302, 669, 765, 1755
TscAI CASTG 6 cut(s) 225, 710, 805, 835, 1423, 1507
TseFI GTSAC 4 cut(s) 5, 526, 1375, 1502
TseI GCWGC 3 cut(s) 611, 898, 1424
Tsp45I GTSAC 4 cut(s) 5, 526, 1375, 1502
TspDTI ATGAA 9 cut(s) 748, 1004, 1083, 1149, 1241, 1351, 1481, 1529, 1538
TspRI CASTG 6 cut(s) 225, 710, 805, 835, 1423, 1507
Tth111I GACNNNGTC 1 cut(s) 495
Vha464I CTTAAG 1 cut(s) 95
VpaK11BI GGWCC 4 cut(s) 20, 538, 576, 1684
VspI ATTAAT 3 cut(s) 111, 198, 765
XapI RAATTY 6 cut(s) 314, 371, 398, 590, 673, 1262
XceI RCATGY 4 cut(s) 603, 952, 1092, 1405
XcmI CCANNNNNNNNNTGG 1 cut(s) 449
XmiI GTMKAC 1 cut(s) 480
XmnI GAANNNNTTC 1 cut(s) 699
XspI CTAG 1 cut(s) 891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.