Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001414

Physical Location & Seq

Genomic Coordinates Reverse (-)

2430679 .. 2431365

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0018500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTCGACTGAGAACAAGAAGCTAATCCTGAAAAGCTCCGACGGAGAGCAATTTGAGATTGATGAGGCTGTTGGTCTAGAATCGCAGACCATCAAGCACATGGTGGAGGACGGCTGCGCCGATAATGCGATCCCCTTGCCCAACGTCACCGGCGCCATCCTTGCCAAGGTCATCGAGTACTGCAAGAGGCACGTTGAGGACAAGGAAAGCAAGAATGAAGACAATAAGAATGGTAAGGAGGAGTCTCTCGAGAAATTCGACGCAGAGTTCGTGAAAGTCGACCAGAACGTCCGGTTCGATCTGATATTGGCAGCAAACTATCTGAACATCAACGGGCTGCTGGACTTGACATGCCAGACTGTGGCAGACATGATAAAGGGAAAGTCTCCCGAAGAGATTCGCAAGACTTTCAACATCAAGAATGACTTCACTCCTGAGGAAGAAGAGGAGGTTCGAAGGGAGAACCAATGGGCTTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008525 GO:0008526 GO:0008610 GO:0008654 GO:0009058 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019637 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032501 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044464 GO:0044703 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048193 GO:0048367 GO:0048468 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0061458 GO:0071702 GO:0071704 GO:0071840 GO:0090407 GO:0090567 GO:0097164 GO:0120009 GO:0120010 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

160

Amino Acids

18.25

Weight (kDa)

4.64

Isoelectric Point (pI)

53.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	6 - 65	1.2e-26	Skp1 family, tetramerisation domain
Skp1	PF01466	112 - 158	1.8e-31	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16380 AT2G16380 AT2G16380 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT4G34580 AT4G34580 AT4G39180 AT4G39180 AT4G39180
fragaria_vesca	FvH4_2g09420 FvH4_2g09420 FvH4_2g09420 FvH4_2g09490 FvH4_2g09490
malus_domestica	MD05G1062700.v1.1 MD05G1062800.v1.1 MD05G1062900.v1.1 MD10G1070400.v1.1 MD10G1070500.v1.1
prunus_persica	Prupe.8G092000_v2.0.a1 Prupe.8G092100_v2.0.a1 Prupe.8G092200_v2.0.a1
pyrus_communis	pycom05g05440 pycom10g05620 pycom10g05630
rosa_chinensis	RchiOBHm_Chr6g0265701 RchiOBHm_Chr6g0265771
rosa_laevigata	RLG00000014161 RLG00000014165
rosa_multiflora	Rmu_co8114364.1_g000001 Rmu_sc0000208.1_g000028 Rmu_sc0008535.1_g000015
rosa_roxburghii	Rroxscaffold_175G00432510 Rroxscaffold_175G00432560 Rroxscaffold_7G00202430
rosa_rugosa	Rorug06G0018500 Rorug06G0019000
rosa_samantha	Rh6AG140700 Rh6AG141500 Rh6BG141100 Rh6BG141400 Rh6CG137700 Rh6CG138000 Rh6DG124600 Rh6DG125000
rosa_wichuraiana	Rw6G012170 Rw6G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	361
AccI	GTMKAC	2 cut(s)	5, 279
AclWI	GGATC	1 cut(s)	124
AcsI	RAATTY	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	153
AdeI	CACNNNGTG	1 cut(s)	103
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	2 cut(s)	166, 361
AgsI	TTSAA	1 cut(s)	412
AluBI	AGCT	2 cut(s)	22, 36
AluI	AGCT	2 cut(s)	22, 36
Alw26I	GTCTC	2 cut(s)	249, 390
AlwI	GGATC	1 cut(s)	124
Ama87I	CYCGRG	1 cut(s)	248
ApeKI	GCWGC	3 cut(s)	114, 311, 337
ApoI	RAATTY	1 cut(s)	254
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
Asp700I	GAANNNNTTC	2 cut(s)	396, 425
AspLEI	GCGC	2 cut(s)	119, 155
AsuHPI	GGTGA	1 cut(s)	139
AsuII	TTCGAA	1 cut(s)	454
AvaI	CYCGRG	1 cut(s)	248
AxyI	CCTNAGG	1 cut(s)	435
BanI	GGYRCC	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	225
BbvI	GCAGC	3 cut(s)	101, 323, 324
BccI	CCATC	2 cut(s)	98, 164
BceAI	ACGGC	1 cut(s)	127
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BcoDI	GTCTC	2 cut(s)	249, 390
BfaI	CTAG	1 cut(s)	77
BfoI	RGCGCY	1 cut(s)	156
BisI	GCNGC	3 cut(s)	115, 312, 338
BlsI	GCNGC	3 cut(s)	116, 313, 339
BmcAI	AGTACT	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	454
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 361
Bse118I	RCCGGY	1 cut(s)	149
Bse21I	CCTNAGG	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	2 cut(s)	166, 361
BseMII	CTCAG	1 cut(s)	426
BseRI	GAGGAG	2 cut(s)	254, 461
BseXI	GCAGC	3 cut(s)	101, 323, 324
BshNI	GGYRCC	1 cut(s)	152
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	2 cut(s)	150, 292
BslI	CCNNNNNNNGG	2 cut(s)	166, 361
BsmAI	GTCTC	2 cut(s)	249, 390
BsoBI	CYCGRG	1 cut(s)	248
Bsp119I	TTCGAA	1 cut(s)	454
Bsp143I	GATC	2 cut(s)	129, 298
BspCNI	CTCAG	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	124
BspT104I	TTCGAA	1 cut(s)	454
BspT107I	GGYRCC	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	2 cut(s)	129, 298
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	2 cut(s)	387, 438
BstACI	GRCGYC	1 cut(s)	153
BstBI	TTCGAA	1 cut(s)	454
BstDEI	CTNAG	2 cut(s)	9, 435
BstENI	CCTNNNNNAGG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	2 cut(s)	119, 155
BstKTI	GATC	2 cut(s)	132, 301
BstMAI	GTCTC	2 cut(s)	249, 390
BstMBI	GATC	2 cut(s)	129, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 161
BstNSI	RCATGY	1 cut(s)	354
BstV1I	GCAGC	3 cut(s)	101, 323, 324
BstV2I	GAAGAC	1 cut(s)	225
Bsu36I	CCTNAGG	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	156
CfoI	GCGC	2 cut(s)	119, 155
Cfr10I	RCCGGY	1 cut(s)	149
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	3 cut(s)	100, 351, 370
CviJI	RGCY	6 cut(s)	22, 36, 68, 114, 337, 473
CviKI_1	RGCY	6 cut(s)	22, 36, 68, 114, 337, 473
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	2 cut(s)	9, 435
DinI	GGCGCC	1 cut(s)	154
DpnI	GATC	2 cut(s)	131, 300
DpnII	GATC	2 cut(s)	129, 298
DraIII	CACNNNGTG	1 cut(s)	103
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
Eam1104I	CTCTTC	2 cut(s)	387, 438
EarI	CTCTTC	2 cut(s)	387, 438
Eco130I	CCWWGG	1 cut(s)	165
Eco81I	CCTNAGG	1 cut(s)	435
Eco88I	CYCGRG	1 cut(s)	248
EcoNI	CCTNNNNNAGG	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	165
EgeI	GGCGCC	1 cut(s)	154
EheI	GGCGCC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	3 cut(s)	103, 354, 373
FaiI	YATR	3 cut(s)	101, 352, 371
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FatI	CATG	3 cut(s)	99, 350, 369
FblI	GTMKAC	2 cut(s)	5, 279
Fnu4HI	GCNGC	3 cut(s)	115, 312, 338
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	3 cut(s)	115, 312, 338
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	2 cut(s)	118, 154
GluI	GCNGC	3 cut(s)	115, 312, 338
HaeII	RGCGCY	1 cut(s)	156
HapII	CCGG	2 cut(s)	150, 292
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	2 cut(s)	119, 155
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	3 cut(s)	103, 354, 373
Hin6I	GCGC	2 cut(s)	117, 153
HinP1I	GCGC	2 cut(s)	117, 153
HincII	GTYRAC	2 cut(s)	6, 280
HindII	GTYRAC	2 cut(s)	6, 280
HinfI	GANTC	3 cut(s)	80, 242, 397
HpaII	CCGG	2 cut(s)	150, 292
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	6, 280
Hpy188I	TCNGA	3 cut(s)	40, 303, 324
Hpy188III	TCNNGA	8 cut(s)	28, 77, 248, 250, 271, 389, 418, 434
Hpy8I	GTNNAC	2 cut(s)	6, 280
Hpy99I	CGWCG	2 cut(s)	44, 263
HpyAV	CCTTC	1 cut(s)	450
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	3 cut(s)	144, 192, 288
HpyCH4V	TGCA	1 cut(s)	183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 161
HpyF3I	CTNAG	2 cut(s)	9, 435
HpySE526I	ACGT	3 cut(s)	144, 192, 288
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	103, 354, 373
HspAI	GCGC	2 cut(s)	117, 153
KasI	GGCGCC	1 cut(s)	152
Kzo9I	GATC	2 cut(s)	129, 298
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	7 cut(s)	41, 163, 296, 305, 326, 368, 447
Lsp1109I	GCAGC	3 cut(s)	101, 323, 324
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	3 cut(s)	144, 192, 288
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	2 cut(s)	131, 300
MboI	GATC	2 cut(s)	129, 298
MboII	GAAGA	4 cut(s)	230, 404, 452, 455
MluCI	AATT	2 cut(s)	50, 254
Mly113I	GGCGCC	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	8 cut(s)	58, 100, 180, 190, 232, 430, 439, 442
MroXI	GAANNNNTTC	2 cut(s)	396, 425
MspI	CCGG	2 cut(s)	150, 292
MwoI	GCNNNNNNNGC	2 cut(s)	125, 161
NarI	GGCGCC	1 cut(s)	153
NdeII	GATC	2 cut(s)	129, 298
NlaIII	CATG	3 cut(s)	103, 354, 373
NlaIV	GGNNCC	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	145
NspI	RCATGY	1 cut(s)	354
NspV	TTCGAA	1 cut(s)	454
PaeR7I	CTCGAG	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	6 cut(s)	117, 255, 267, 276, 285, 294
PdmI	GAANNNNTTC	2 cut(s)	396, 425
PfeI	GAWTC	2 cut(s)	80, 397
PflMI	CCANNNNNTGG	1 cut(s)	361
PkrI	GCNGC	3 cut(s)	116, 313, 339
PleI	GAGTC	1 cut(s)	250
PluTI	GGCGCC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	154
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SalI	GTCGAC	2 cut(s)	4, 278
SatI	GCNGC	3 cut(s)	115, 312, 338
Sau3AI	GATC	2 cut(s)	129, 298
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	1 cut(s)	251
SetI	ASST	7 cut(s)	24, 38, 147, 171, 195, 291, 453
SfoI	GGCGCC	1 cut(s)	154
Sfr274I	CTCGAG	1 cut(s)	248
SfuI	TTCGAA	1 cut(s)	454
SgrAI	CRCCGGYG	1 cut(s)	149
SlaI	CTCGAG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	50, 254
SspDI	GGCGCC	1 cut(s)	152
SspMI	CTAG	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	3 cut(s)	147, 195, 291
TaqI	TCGA	7 cut(s)	5, 174, 249, 258, 279, 297, 454
TasI	AATT	2 cut(s)	50, 254
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	2 cut(s)	80, 397
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	3 cut(s)	114, 311, 337
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	231
TspGWI	ACGGA	1 cut(s)	57
Van91I	CCANNNNNTGG	1 cut(s)	361
XagI	CCTNNNNNAGG	1 cut(s)	164
XapI	RAATTY	1 cut(s)	254
XbaI	TCTAGA	1 cut(s)	76
XceI	RCATGY	1 cut(s)	354
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XhoI	CTCGAG	1 cut(s)	248
XmiI	GTMKAC	2 cut(s)	5, 279
XmnI	GAANNNNTTC	2 cut(s)	396, 425
XspI	CTAG	1 cut(s)	77
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.