Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001414

Physical Location & Seq

Genomic Coordinates Reverse (-)

6043603 .. 6045706

Gene Structure 2104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g05630.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGTTTGGCGGTCATGGATTCAGAATTTTGCTTTCAGCCCCATACATTTTTTACAGAAGAATATCAAGATTTGATTTCCTTAATCAAAACTTAACACAGCCGGATGAGAACTCTGAGGATGAGAGGAAAACAAAGCTTGTGTCTTTCAAGAAGGCAGCAAACATGATTACAAACTCCTTCAGTAAGGGTCGAAGGAACAGTAAGGTAATGTCTTTCCCTATAGACGATGGCATTGATGCCGAGGAGCTCAAGGCAGCTCAGGAATTCCGGCAAACACTTGTATCCGAAGAACTACTTCCCTCGAAACATGACGATACTCATATGTTGCTAAGGGCCCGGAAATTTGATGTTGAGAAAACAAAGCAAATGTGGTCTGACATGCTCCAGTGGAGGCAGGAATTTGGTGCTGACACTATTATGGAGGACTTCGAGTTTAAGGAAGTTGATGAAGTCTTAAAATACTATCCACAAGGGCATCATGGAGTTGATAAGGATGGGCGGCCTGTCTACATTGAGAGACTGGGTCAAGTTGATTCTAATAAGCTGCTGCAAGTGACAACAATGGAACGGTATATAAAGTACCACATACGGGAGTTTGAGAGGACCTTTATCTGTAAATTCCCCGCCTGTTCCATTGCAGCAAAGAAGCACATTGATCAGAGTACCACAATTCTGGATGTCCAAGGAGTGGGGCTTACAAGTTTAAATAAATCTGCAAGGGAACTCATTCAGCGCCTTCAGAAGGTCGATGGTGACAATTATCCTGAGACCCTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTATGGAACACCGTCAAATCTTTCCTTGATCCCAAGACCACTGCAAAAATCAATGTTCTGGGAAATCAATATCAGAGCAAGTTGCTTGAAATAATTGAAGCTACTGAGCTACCAGAGTTTTTGGGTGGTAGTTGCACTTGTGCCAATAAGGGTAGCTGCATGATCTCTGATAAGGGCCCGTGGAATGATCCAGAAATAATGAAGGTGATTTTGTACAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008525 GO:0008526 GO:0008610 GO:0008654 GO:0009058 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019637 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032501 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044464 GO:0044703 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048193 GO:0048367 GO:0048468 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0061458 GO:0071702 GO:0071704 GO:0071840 GO:0090407 GO:0090567 GO:0097164 GO:0120009 GO:0120010 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

346

Amino Acids

39.78

Weight (kDa)

7.05

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16380 AT2G16380 AT2G16380 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT4G34580 AT4G34580 AT4G39180 AT4G39180 AT4G39180
fragaria_vesca	FvH4_2g09420 FvH4_2g09420 FvH4_2g09420 FvH4_2g09490 FvH4_2g09490
malus_domestica	MD05G1062700.v1.1 MD05G1062800.v1.1 MD05G1062900.v1.1 MD10G1070400.v1.1 MD10G1070500.v1.1
prunus_persica	Prupe.8G092000_v2.0.a1 Prupe.8G092100_v2.0.a1 Prupe.8G092200_v2.0.a1
pyrus_communis	pycom05g05440 pycom10g05620 pycom10g05630
rosa_chinensis	RchiOBHm_Chr6g0265701 RchiOBHm_Chr6g0265771
rosa_laevigata	RLG00000014161 RLG00000014165
rosa_multiflora	Rmu_co8114364.1_g000001 Rmu_sc0000208.1_g000028 Rmu_sc0008535.1_g000015
rosa_roxburghii	Rroxscaffold_175G00432510 Rroxscaffold_175G00432560 Rroxscaffold_7G00202430
rosa_rugosa	Rorug06G0018500 Rorug06G0019000
rosa_samantha	Rh6AG140700 Rh6AG141500 Rh6BG141100 Rh6BG141400 Rh6CG137700 Rh6CG138000 Rh6DG124600 Rh6DG125000
rosa_wichuraiana	Rw6G012170 Rw6G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	688
AccI	GTMKAC	1 cut(s)	507
AciI	CCGC	3 cut(s)	9, 499, 624
AclWI	GGATC	2 cut(s)	839, 998
AcsI	RAATTY	5 cut(s)	24, 263, 341, 398, 617
AcuI	CTGAAG	2 cut(s)	163, 722
AfaI	GTAC	3 cut(s)	581, 664, 1031
AfiI	CCNNNNNNNGG	3 cut(s)	589, 688, 742
AgsI	TTSAA	3 cut(s)	148, 905, 914
AluBI	AGCT	7 cut(s)	136, 247, 257, 544, 917, 925, 972
AluI	AGCT	7 cut(s)	136, 247, 257, 544, 917, 925, 972
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	2 cut(s)	511, 761
AlwI	GGATC	2 cut(s)	839, 998
AoxI	GGCC	3 cut(s)	333, 500, 991
ApaI	GGGCCC	2 cut(s)	337, 995
ApeKI	GCWGC	6 cut(s)	155, 254, 544, 547, 638, 972
ApoI	RAATTY	5 cut(s)	24, 263, 341, 398, 617
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
Asp700I	GAANNNNTTC	2 cut(s)	294, 726
AspLEI	GCGC	1 cut(s)	735
AspS9I	GGNCC	5 cut(s)	333, 334, 603, 991, 992
AsuC2I	CCSGG	1 cut(s)	337
AsuHPI	GGTGA	2 cut(s)	764, 1033
AvaII	GGWCC	1 cut(s)	603
BaeGI	GKGCMC	2 cut(s)	337, 995
BaeI	ACNNNNGTAYC	2 cut(s)	264, 297
BanII	GRGCYC	3 cut(s)	249, 337, 995
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	6 cut(s)	167, 266, 531, 534, 650, 959
BccI	CCATC	3 cut(s)	221, 488, 743
BciVI	GTATCC	1 cut(s)	292
BclI	TGATCA	1 cut(s)	655
BcnI	CCSGG	1 cut(s)	337
BcoDI	GTCTC	2 cut(s)	511, 761
BfmI	CTRYAG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	736
BfuI	GTATCC	1 cut(s)	292
BisI	GCNGC	7 cut(s)	156, 255, 500, 545, 548, 639, 973
BlsI	GCNGC	7 cut(s)	157, 256, 501, 546, 549, 640, 974
Bme1390I	CCNGG	1 cut(s)	337
Bme18I	GGWCC	1 cut(s)	603
BmgT120I	GGNCC	5 cut(s)	333, 334, 603, 991, 992
BmiI	GGNNCC	2 cut(s)	335, 993
BmrFI	CCNGG	1 cut(s)	337
BmrI	ACTGGG	1 cut(s)	530
BmsI	GCATC	2 cut(s)	226, 484
BmuI	ACTGGG	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	368
Bpu10I	CCTNAGC	2 cut(s)	258, 329
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	337
BsaI	GGTCTC	1 cut(s)	761
BsaJI	CCNNGG	3 cut(s)	240, 682, 995
Bsc4I	CCNNNNNNNGG	3 cut(s)	589, 688, 742
Bse1I	ACTGG	2 cut(s)	385, 525
Bse3DI	GCAATG	1 cut(s)	633
BseDI	CCNNGG	3 cut(s)	240, 682, 995
BseGI	GGATG	4 cut(s)	109, 124, 499, 682
BseLI	CCNNNNNNNGG	3 cut(s)	589, 688, 742
BseMI	GCAATG	1 cut(s)	633
BseMII	CTCAG	4 cut(s)	105, 272, 756, 912
BseNI	ACTGG	2 cut(s)	385, 525
BseRI	GAGGAG	1 cut(s)	257
BseSI	GKGCMC	2 cut(s)	337, 995
BseXI	GCAGC	6 cut(s)	167, 266, 531, 534, 650, 959
BshFI	GGCC	3 cut(s)	335, 502, 993
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	3 cut(s)	101, 268, 337
BslI	CCNNNNNNNGG	3 cut(s)	589, 688, 742
BsmAI	GTCTC	2 cut(s)	511, 761
BsnI	GGCC	3 cut(s)	335, 502, 993
Bso31I	GGTCTC	1 cut(s)	761
Bsp120I	GGGCCC	2 cut(s)	333, 991
Bsp1286I	GDGCHC	3 cut(s)	249, 337, 995
Bsp1407I	TGTACA	1 cut(s)	1029
Bsp143I	GATC	4 cut(s)	655, 844, 978, 1003
BspACI	CCGC	3 cut(s)	9, 499, 624
BspANI	GGCC	3 cut(s)	335, 502, 993
BspCNI	CTCAG	4 cut(s)	106, 271, 757, 913
BspLI	GGNNCC	2 cut(s)	335, 993
BspPI	GGATC	2 cut(s)	839, 998
BspTNI	GGTCTC	1 cut(s)	761
BsrDI	GCAATG	1 cut(s)	633
BsrGI	TGTACA	1 cut(s)	1029
BsrI	ACTGG	2 cut(s)	385, 525
BssECI	CCNNGG	3 cut(s)	240, 682, 995
BssMI	GATC	4 cut(s)	655, 844, 978, 1003
BssT1I	CCWWGG	1 cut(s)	682
Bst4CI	ACNGT	5 cut(s)	200, 570, 779, 829, 1034
BstAUI	TGTACA	1 cut(s)	1029
BstDEI	CTNAG	5 cut(s)	114, 258, 329, 765, 921
BstDSI	CCRYGG	1 cut(s)	995
BstENI	CCTNNNNNAGG	1 cut(s)	740
BstF5I	GGATG	4 cut(s)	109, 124, 499, 682
BstH2I	RGCGCY	1 cut(s)	736
BstHHI	GCGC	1 cut(s)	735
BstKTI	GATC	4 cut(s)	658, 847, 981, 1006
BstMAI	GTCTC	2 cut(s)	511, 761
BstMBI	GATC	4 cut(s)	655, 844, 978, 1003
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	335
BstSFI	CTRYAG	1 cut(s)	219
BstSLI	GKGCMC	2 cut(s)	337, 995
BstV1I	GCAGC	6 cut(s)	167, 266, 531, 534, 650, 959
BstXI	CCANNNNNNTGG	1 cut(s)	673
BsuI	GTATCC	1 cut(s)	292
BsuRI	GGCC	3 cut(s)	335, 502, 993
BtgI	CCRYGG	1 cut(s)	995
BtsCI	GGATG	4 cut(s)	109, 124, 499, 682
BtsI	GCAGTG	1 cut(s)	855
BtsIMutI	CAGTG	2 cut(s)	392, 855
CfoI	GCGC	1 cut(s)	735
Cfr13I	GGNCC	5 cut(s)	333, 334, 603, 991, 992
Csp6I	GTAC	3 cut(s)	580, 663, 1030
CviAII	CATG	6 cut(s)	14, 163, 308, 379, 479, 976
CviQI	GTAC	3 cut(s)	580, 663, 1030
DdeI	CTNAG	5 cut(s)	114, 258, 329, 765, 921
DpnI	GATC	4 cut(s)	657, 846, 980, 1005
DpnII	GATC	4 cut(s)	655, 844, 978, 1003
DraI	TTTAAA	1 cut(s)	705
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	682
Eco24I	GRGCYC	3 cut(s)	249, 337, 995
Eco31I	GGTCTC	1 cut(s)	761
Eco47I	GGWCC	1 cut(s)	603
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	2 cut(s)	163, 722
EcoICRI	GAGCTC	1 cut(s)	247
EcoNI	CCTNNNNNAGG	1 cut(s)	740
EcoO109I	RGGNCCY	3 cut(s)	333, 603, 991
EcoRI	GAATTC	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	682
EcoT38I	GRGCYC	3 cut(s)	249, 337, 995
ErhI	CCWWGG	1 cut(s)	682
FaeI	CATG	6 cut(s)	17, 166, 311, 382, 482, 979
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	6 cut(s)	13, 162, 307, 378, 478, 975
FauI	CCCGC	1 cut(s)	631
FauNDI	CATATG	1 cut(s)	321
FbaI	TGATCA	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	7 cut(s)	156, 255, 500, 545, 548, 639, 973
FokI	GGATG	4 cut(s)	116, 131, 506, 689
FriOI	GRGCYC	3 cut(s)	249, 337, 995
Fsp4HI	GCNGC	7 cut(s)	156, 255, 500, 545, 548, 639, 973
GlaI	GCGC	1 cut(s)	734
GluI	GCNGC	7 cut(s)	156, 255, 500, 545, 548, 639, 973
GsuI	CTGGAG	1 cut(s)	368
HaeII	RGCGCY	1 cut(s)	736
HaeIII	GGCC	3 cut(s)	335, 502, 993
HapII	CCGG	3 cut(s)	101, 268, 337
HhaI	GCGC	1 cut(s)	735
Hin1II	CATG	6 cut(s)	17, 166, 311, 382, 482, 979
Hin6I	GCGC	1 cut(s)	733
HinP1I	GCGC	1 cut(s)	733
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	2 cut(s)	18, 533
HpaII	CCGG	3 cut(s)	101, 268, 337
HphI	GGTGA	2 cut(s)	764, 1033
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	8 cut(s)	23, 115, 286, 376, 660, 741, 891, 985
Hpy188III	TCNNGA	7 cut(s)	66, 148, 260, 674, 764, 804, 1007
Hpy8I	GTNNAC	1 cut(s)	508
HpyAV	CCTTC	6 cut(s)	145, 186, 187, 736, 746, 1012
HpyCH4III	ACNGT	5 cut(s)	200, 570, 779, 829, 1034
HpyCH4V	TGCA	6 cut(s)	550, 638, 716, 860, 951, 975
HpyF3I	CTNAG	5 cut(s)	114, 258, 329, 765, 921
Hsp92II	CATG	6 cut(s)	17, 166, 311, 382, 482, 979
HspAI	GCGC	1 cut(s)	733
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	4 cut(s)	655, 844, 978, 1003
LmnI	GCTCC	2 cut(s)	244, 387
Lsp1109I	GCAGC	6 cut(s)	167, 266, 531, 534, 650, 959
LweI	GCATC	2 cut(s)	226, 484
MaeIII	GTNAC	2 cut(s)	553, 752
MalI	GATC	4 cut(s)	657, 846, 980, 1005
MboI	GATC	4 cut(s)	655, 844, 978, 1003
MboII	GAAGA	2 cut(s)	69, 299
MhlI	GDGCHC	3 cut(s)	249, 337, 995
MluCI	AATT	8 cut(s)	24, 263, 341, 398, 617, 669, 757, 909
MnlI	CCTC	7 cut(s)	109, 117, 235, 310, 384, 415, 594
MroXI	GAANNNNTTC	2 cut(s)	294, 726
MseI	TTAA	5 cut(s)	81, 92, 435, 455, 704
MslI	CAYNNNNRTG	1 cut(s)	416
MspI	CCGG	3 cut(s)	101, 268, 337
MspR9I	CCNGG	1 cut(s)	337
NciI	CCSGG	1 cut(s)	337
NdeI	CATATG	1 cut(s)	321
NdeII	GATC	4 cut(s)	655, 844, 978, 1003
NlaIII	CATG	6 cut(s)	17, 166, 311, 382, 482, 979
NlaIV	GGNNCC	2 cut(s)	335, 993
NmeAIII	GCCGAG	1 cut(s)	265
NmuCI	GTSAC	2 cut(s)	553, 752
NspI	RCATGY	1 cut(s)	382
PdmI	GAANNNNTTC	2 cut(s)	294, 726
PfeI	GAWTC	2 cut(s)	18, 533
PflFI	GACNNNGTC	1 cut(s)	522
PflMI	CCANNNNNTGG	1 cut(s)	688
PkrI	GCNGC	7 cut(s)	157, 256, 501, 546, 549, 640, 974
PpuMI	RGGWCCY	1 cut(s)	603
Psp124BI	GAGCTC	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	603
PspN4I	GGNNCC	2 cut(s)	335, 993
PspOMI	GGGCCC	2 cut(s)	333, 991
PspPI	GGNCC	5 cut(s)	333, 334, 603, 991, 992
PspPPI	RGGWCCY	1 cut(s)	603
PsyI	GACNNNGTC	1 cut(s)	522
RsaI	GTAC	3 cut(s)	581, 664, 1031
RsaNI	GTAC	3 cut(s)	580, 663, 1030
RseI	CAYNNNNRTG	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	5 cut(s)	81, 92, 435, 455, 704
SatI	GCNGC	7 cut(s)	156, 255, 500, 545, 548, 639, 973
Sau3AI	GATC	4 cut(s)	655, 844, 978, 1003
Sau96I	GGNCC	5 cut(s)	333, 334, 603, 991, 992
ScrFI	CCNGG	1 cut(s)	337
SduI	GDGCHC	3 cut(s)	249, 337, 995
SfaNI	GCATC	2 cut(s)	226, 484
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	1 cut(s)	603
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	8 cut(s)	24, 263, 341, 398, 617, 669, 757, 909
SsiI	CCGC	3 cut(s)	9, 499, 624
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	682
TaaI	ACNGT	5 cut(s)	200, 570, 779, 829, 1034
TaqI	TCGA	4 cut(s)	190, 302, 429, 747
TasI	AATT	8 cut(s)	24, 263, 341, 398, 617, 669, 757, 909
TatI	WGTACW	1 cut(s)	1029
TauI	GCSGC	1 cut(s)	502
TfiI	GAWTC	2 cut(s)	18, 533
Tru1I	TTAA	5 cut(s)	81, 92, 435, 455, 704
Tru9I	TTAA	5 cut(s)	81, 92, 435, 455, 704
TscAI	CASTG	2 cut(s)	392, 862
TseFI	GTSAC	2 cut(s)	553, 752
TseI	GCWGC	6 cut(s)	155, 254, 544, 547, 638, 972
Tsp45I	GTSAC	2 cut(s)	553, 752
TspDTI	ATGAA	3 cut(s)	462, 775, 1031
TspRI	CASTG	2 cut(s)	392, 862
Tth111I	GACNNNGTC	1 cut(s)	522
Van91I	CCANNNNNTGG	1 cut(s)	688
VpaK11BI	GGWCC	1 cut(s)	603
XagI	CCTNNNNNAGG	1 cut(s)	740
XapI	RAATTY	5 cut(s)	24, 263, 341, 398, 617
XceI	RCATGY	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	507
XmnI	GAANNNNTTC	2 cut(s)	294, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.