Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001414

Physical Location & Seq

Genomic Coordinates Forward (+)

17662254 .. 17665984

Gene Structure 3731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG125000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTGTGACACCATGTCTGGACCTCATGACCGACACCTAAAACCTGATAAGGGTGGTTGCATGCGTTCCGATAAAGGCCCATGGAATGACCCAGATATAATGAAGATGGTTCACAATGGTGAGGGCAAATGCACAAGGAGAACATTATCAGGCATTGAGGAGAAGATAATCTCTGAAGATGAAATGTTTTACTCCAAGACATGTGATTCTTTCAACTCAAAAATAGCTCAAATGGAACATACAAAACTCTCTCATGTTCCTAAACAAGTTTCATTCACCAAAAAATCCAGTAAGGACTATGAGTATGACAAGTTGATGCCAATGGTTGACAAGACGGTGGATGCAACTTGGCCTAAACCAGTTCATTATGATAAATTTGCCCACAGTCAAGATTGCTTCCCCTCGCATAATGCTTGCAAGTCTTCTGAAGGACTAAGCAGTTTCTTACTTTCTGGAATCATGGCCTTCATCATGGGAATTGTCACCATGATCCGATTGACACGAGACATGCCAAGGAAACTCACTGAGGCAGCCCTCTATGGAAGCCCTGCTTACTGCAATGGAATGGGGATGAAAGCCAAGCAGTTGCCTGCATCATCCATCTCCAGTGACACATATATGAACATGATGAAGCGCATGGCCGAGTTGGAGGAGAAAGTGAAAGTTCTCAGCACGAAACCAACTATCATGCCCCCTGAGAAAGAGGAAATGTTGAACAATGCTCTCAACCGAGCCACAGCCTTGGAACAAGAGCTTTCAGCAACCAAGAAGGCACTTGATGACGCCCTGGTCCGACAGAATGAGCTTATAGCCTACCTTGATAAGAAGAAAAAGAAGAAGAAACTGAAATTGAACCCATTTAAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008525 GO:0008526 GO:0008610 GO:0008654 GO:0009058 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019637 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032501 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044464 GO:0044703 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048193 GO:0048367 GO:0048468 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0061458 GO:0071702 GO:0071704 GO:0071840 GO:0090407 GO:0090567 GO:0097164 GO:0120009 GO:0120010 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

289

Amino Acids

32.79

Weight (kDa)

9.1

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16380 AT2G16380 AT2G16380 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT4G34580 AT4G34580 AT4G39180 AT4G39180 AT4G39180
fragaria_vesca	FvH4_2g09420 FvH4_2g09420 FvH4_2g09420 FvH4_2g09490 FvH4_2g09490
malus_domestica	MD05G1062700.v1.1 MD05G1062800.v1.1 MD05G1062900.v1.1 MD10G1070400.v1.1 MD10G1070500.v1.1
prunus_persica	Prupe.8G092000_v2.0.a1 Prupe.8G092100_v2.0.a1 Prupe.8G092200_v2.0.a1
pyrus_communis	pycom05g05440 pycom10g05620 pycom10g05630
rosa_chinensis	RchiOBHm_Chr6g0265701 RchiOBHm_Chr6g0265771
rosa_laevigata	RLG00000014161 RLG00000014165
rosa_multiflora	Rmu_co8114364.1_g000001 Rmu_sc0000208.1_g000028 Rmu_sc0008535.1_g000015
rosa_roxburghii	Rroxscaffold_175G00432510 Rroxscaffold_175G00432560 Rroxscaffold_7G00202430
rosa_rugosa	Rorug06G0018500 Rorug06G0019000
rosa_samantha	Rh6AG140700 Rh6AG141500 Rh6BG141100 Rh6BG141400 Rh6CG137700 Rh6CG138000 Rh6DG124600 Rh6DG125000
rosa_wichuraiana	Rw6G012170 Rw6G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	788
AclWI	GGATC	1 cut(s)	484
AcoI	YGGCCR	1 cut(s)	639
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	2 cut(s)	195, 447
AcyI	GRCGYC	1 cut(s)	783
AfiI	CCNNNNNNNGG	1 cut(s)	50
AflIII	ACRYGT	1 cut(s)	200
AgsI	TTSAA	3 cut(s)	214, 715, 853
AhdI	GACNNNNNGTC	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	786
AleI	CACNNNNGTG	1 cut(s)	117
AluBI	AGCT	3 cut(s)	227, 754, 805
AluI	AGCT	3 cut(s)	227, 754, 805
Alw26I	GTCTC	1 cut(s)	498
AlwI	GGATC	1 cut(s)	484
AoxI	GGCC	4 cut(s)	76, 350, 462, 639
ApeKI	GCWGC	1 cut(s)	530
ApoI	RAATTY	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	636
AspS9I	GGNCC	3 cut(s)	20, 77, 790
AsuHPI	GGTGA	3 cut(s)	131, 268, 475
AvaII	GGWCC	2 cut(s)	20, 790
BauI	CACGAG	1 cut(s)	501
BbsI	GAAGAC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	542
BccI	CCATC	2 cut(s)	100, 608
BciT130I	CCWGG	1 cut(s)	788
BcoDI	GTCTC	1 cut(s)	498
BisI	GCNGC	1 cut(s)	531
BlsI	GCNGC	1 cut(s)	532
Bme1390I	CCNGG	1 cut(s)	788
Bme18I	GGWCC	2 cut(s)	20, 790
BmeRI	GACNNNNNGTC	1 cut(s)	13
BmgT120I	GGNCC	3 cut(s)	20, 77, 790
BmrFI	CCNGG	1 cut(s)	788
BmsI	GCATC	3 cut(s)	306, 331, 602
BpiI	GAAGAC	1 cut(s)	414
BpmI	CTGGAG	1 cut(s)	589
BsaHI	GRCGYC	1 cut(s)	783
BsaJI	CCNNGG	4 cut(s)	80, 512, 741, 786
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	3 cut(s)	288, 359, 606
Bse3DI	GCAATG	1 cut(s)	565
BseBI	CCWGG	1 cut(s)	788
BseDI	CCNNGG	4 cut(s)	80, 512, 741, 786
BseGI	GGATG	3 cut(s)	346, 576, 596
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	565
BseMII	CTCAG	3 cut(s)	516, 682, 687
BseNI	ACTGG	3 cut(s)	288, 359, 606
BseRI	GAGGAG	2 cut(s)	173, 665
BseXI	GCAGC	1 cut(s)	542
BshFI	GGCC	4 cut(s)	78, 352, 464, 641
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	498
BsnI	GGCC	4 cut(s)	78, 352, 464, 641
Bsp143I	GATC	1 cut(s)	489
Bsp19I	CCATGG	1 cut(s)	80
BspANI	GGCC	4 cut(s)	78, 352, 464, 641
BspCNI	CTCAG	3 cut(s)	517, 681, 688
BspHI	TCATGA	1 cut(s)	25
BspPI	GGATC	1 cut(s)	484
BsrDI	GCAATG	1 cut(s)	565
BsrI	ACTGG	3 cut(s)	288, 359, 606
BssECI	CCNNGG	4 cut(s)	80, 512, 741, 786
BssMI	GATC	1 cut(s)	489
BssNI	GRCGYC	1 cut(s)	783
BssSI	CACGAG	1 cut(s)	501
BssT1I	CCWWGG	3 cut(s)	80, 512, 741
Bst2BI	CACGAG	1 cut(s)	501
Bst2UI	CCWGG	1 cut(s)	788
Bst4CI	ACNGT	2 cut(s)	337, 386
BstACI	GRCGYC	1 cut(s)	783
BstC8I	GCNNGC	3 cut(s)	62, 415, 591
BstDEI	CTNAG	4 cut(s)	434, 525, 668, 696
BstDSI	CCRYGG	1 cut(s)	80
BstF5I	GGATG	3 cut(s)	346, 576, 596
BstHHI	GCGC	1 cut(s)	636
BstKTI	GATC	1 cut(s)	492
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	1 cut(s)	489
BstNI	CCWGG	1 cut(s)	788
BstNSI	RCATGY	3 cut(s)	64, 204, 511
BstSCI	CCNGG	1 cut(s)	786
BstV1I	GCAGC	1 cut(s)	542
BstV2I	GAAGAC	1 cut(s)	414
BstXI	CCANNNNNNTGG	2 cut(s)	742, 864
BsuRI	GGCC	4 cut(s)	78, 352, 464, 641
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	346, 576, 596
BtsIMutI	CAGTG	2 cut(s)	522, 613
Cac8I	GCNNGC	3 cut(s)	62, 415, 591
CciI	TCATGA	1 cut(s)	25
CfoI	GCGC	1 cut(s)	636
Cfr13I	GGNCC	3 cut(s)	20, 77, 790
CseI	GACGC	1 cut(s)	791
DdeI	CTNAG	4 cut(s)	434, 525, 668, 696
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
DraI	TTTAAA	1 cut(s)	862
DrdI	GACNNNNNNGTC	1 cut(s)	788
DriI	GACNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	788
EaeI	YGGCCR	1 cut(s)	639
Eam1105I	GACNNNNNGTC	1 cut(s)	13
Eco130I	CCWWGG	3 cut(s)	80, 512, 741
Eco47I	GGWCC	2 cut(s)	20, 790
Eco57I	CTGAAG	2 cut(s)	195, 447
EcoRII	CCWGG	1 cut(s)	786
EcoT14I	CCWWGG	3 cut(s)	80, 512, 741
ErhI	CCWWGG	3 cut(s)	80, 512, 741
FalI	AAGNNNNNCTT	2 cut(s)	535, 567
Fnu4HI	GCNGC	1 cut(s)	531
FokI	GGATG	3 cut(s)	353, 583, 583
Fsp4HI	GCNGC	1 cut(s)	531
GlaI	GCGC	1 cut(s)	635
GluI	GCNGC	1 cut(s)	531
GsuI	CTGGAG	1 cut(s)	589
HaeIII	GGCC	4 cut(s)	78, 352, 464, 641
HgaI	GACGC	1 cut(s)	791
HhaI	GCGC	1 cut(s)	636
Hin1I	GRCGYC	1 cut(s)	783
Hin6I	GCGC	1 cut(s)	634
HinP1I	GCGC	1 cut(s)	634
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	2 cut(s)	206, 456
HphI	GGTGA	3 cut(s)	131, 268, 475
Hpy166II	GTNNAC	2 cut(s)	112, 328
Hpy188I	TCNGA	5 cut(s)	70, 175, 427, 494, 794
Hpy188III	TCNNGA	4 cut(s)	18, 26, 389, 453
Hpy8I	GTNNAC	2 cut(s)	112, 328
HpyAV	CCTTC	3 cut(s)	422, 475, 763
HpyCH4III	ACNGT	2 cut(s)	337, 386
HpyCH4V	TGCA	6 cut(s)	60, 132, 344, 417, 558, 593
HpyF3I	CTNAG	4 cut(s)	434, 525, 668, 696
Hsp92I	GRCGYC	1 cut(s)	783
HspAI	GCGC	1 cut(s)	634
Kzo9I	GATC	1 cut(s)	489
Lsp1109I	GCAGC	1 cut(s)	542
LweI	GCATC	3 cut(s)	306, 331, 602
MaeIII	GTNAC	3 cut(s)	5, 481, 608
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	7 cut(s)	115, 175, 188, 414, 838, 847, 850
MluCI	AATT	3 cut(s)	374, 477, 848
MmeI	TCCRAC	2 cut(s)	627, 817
MnlI	CCTC	8 cut(s)	33, 115, 151, 412, 520, 545, 643, 697
MseI	TTAA	1 cut(s)	861
MslI	CAYNNNNRTG	3 cut(s)	117, 617, 862
MspR9I	CCNGG	1 cut(s)	788
MvaI	CCWGG	1 cut(s)	788
NcoI	CCATGG	1 cut(s)	80
NdeII	GATC	1 cut(s)	489
NmeAIII	GCCGAG	1 cut(s)	667
NmuCI	GTSAC	3 cut(s)	5, 481, 608
NspI	RCATGY	3 cut(s)	64, 204, 511
OliI	CACNNNNGTG	1 cut(s)	117
PaeI	GCATGC	1 cut(s)	64
PagI	TCATGA	1 cut(s)	25
PciI	ACATGT	1 cut(s)	200
PfeI	GAWTC	2 cut(s)	206, 456
PkrI	GCNGC	1 cut(s)	532
PscI	ACATGT	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	786
PspGI	CCWGG	1 cut(s)	786
PspPI	GGNCC	3 cut(s)	20, 77, 790
RseI	CAYNNNNRTG	3 cut(s)	117, 617, 862
SaqAI	TTAA	1 cut(s)	861
SatI	GCNGC	1 cut(s)	531
Sau3AI	GATC	1 cut(s)	489
Sau96I	GGNCC	3 cut(s)	20, 77, 790
ScrFI	CCNGG	1 cut(s)	788
SetI	ASST	7 cut(s)	25, 39, 46, 229, 756, 807, 819
SfaNI	GCATC	3 cut(s)	306, 331, 602
SinI	GGWCC	2 cut(s)	20, 790
SmiI	ATTTAAAT	1 cut(s)	862
SmiMI	CAYNNNNRTG	3 cut(s)	117, 617, 862
SphI	GCATGC	1 cut(s)	64
Sse9I	AATT	3 cut(s)	374, 477, 848
StyD4I	CCNGG	1 cut(s)	786
StyI	CCWWGG	3 cut(s)	80, 512, 741
SwaI	ATTTAAAT	1 cut(s)	862
TaaI	ACNGT	2 cut(s)	337, 386
TaqII	GACCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	374, 477, 848
TfiI	GAWTC	2 cut(s)	206, 456
Tru1I	TTAA	1 cut(s)	861
Tru9I	TTAA	1 cut(s)	861
TscAI	CASTG	2 cut(s)	529, 613
TseFI	GTSAC	3 cut(s)	5, 481, 608
TseI	GCWGC	1 cut(s)	530
Tsp45I	GTSAC	3 cut(s)	5, 481, 608
TspDTI	ATGAA	8 cut(s)	116, 195, 261, 353, 457, 587, 635, 644
TspRI	CASTG	2 cut(s)	529, 613
VpaK11BI	GGWCC	2 cut(s)	20, 790
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	3 cut(s)	64, 204, 511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.