Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001414

Physical Location & Seq

Genomic Coordinates Forward (+)

17549638 .. 17554005

Gene Structure 4368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG124600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTCTGCACCTGATGCTGATGGACGTCCTGCTGAAAACTCTGAGGATGAGAAGAAAACAAAGCTTGGGTCTTTTAAGAAGGCAATTTCGAATTCCTTCAATAAGGGTCGCAGGAACAGTAAGGGGCTGACAAGTTTGAACAAATCTGCAAGGGAACTCATCCAACGCCTTCAGAAAGTTGACGGTGACAATTATCCTGAGACCCTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTATGGAACACTGTCAAATCTTTTCTTGACCCGAAGACCACTGCAAAAATCAATGTACTGGGAAACCAATACCAAAGCAAGTTGCTTGAAATAATTGAAGCTAGCGAGCTGCCAGAGTTTTTGGGAGGTACTTGTACTTGTTCTGATAAGGGTGGCTGTATGCTTTCTGATAAGGGCCCATGGAATGATCTAGAAATAATGAAGATGGTTCAGAATTATGGCGAGGACCGTGAGGTTGACGCCAAATCCTCTAGCACAACTATATCCGGCAATGTGGATTCAAGCAATAAGGAGTTGGGCAAAAAGGAGTCAGGCAAAAAGGAGTCTGGCAAAAATGAATCGAGTAAAAATGAGTCGGGCAAACATGAGTTGGACAAGAAGGAGTCGGACAAGAAGGAGTCAGACAAGAAGGAGTTGGACAAGAAGGAGGAGAAGAAGGTCGCTGAAGAAGAAAAAATCTCTGAAGATATGAAGGGTCCCCCAAATCGATCTGATTCAGTCTGCTCAGAGGCTTTTTTGGAGGCTAATGACATGCATATGGATCATCTCTCTCCTGTGCCTGAAGAACTGTCAACTCCCATGGGAGGTGAAAAAGAGGAAAAGCTTAGAGCTGCTCTTACTGCCTTGGAACAACAACTGTCTACAACCAAGCAGGCTGAGGTTGAGAAAGAGCAAAAGCTGAAGGCTGCTCTTGATCGCGTTAATGCCTTGGAACAAGAGCTAACGGAAACCAAGAAGGCACTTGATGAAGCCCGTGTTAAACAAGAGGAGCTTCTAGCCTCTGTTGGGAAGGAAAAGAAGTTTAGCCTATTCTGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008525 GO:0008526 GO:0008610 GO:0008654 GO:0009058 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019637 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032501 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044464 GO:0044703 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048193 GO:0048367 GO:0048468 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0061458 GO:0071702 GO:0071704 GO:0071840 GO:0090407 GO:0090567 GO:0097164 GO:0120009 GO:0120010 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

356

Amino Acids

39.65

Weight (kDa)

5.56

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	45 - 126	1.3e-17	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16380 AT2G16380 AT2G16380 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT4G34580 AT4G34580 AT4G39180 AT4G39180 AT4G39180
fragaria_vesca	FvH4_2g09420 FvH4_2g09420 FvH4_2g09420 FvH4_2g09490 FvH4_2g09490
malus_domestica	MD05G1062700.v1.1 MD05G1062800.v1.1 MD05G1062900.v1.1 MD10G1070400.v1.1 MD10G1070500.v1.1
prunus_persica	Prupe.8G092000_v2.0.a1 Prupe.8G092100_v2.0.a1 Prupe.8G092200_v2.0.a1
pyrus_communis	pycom05g05440 pycom10g05620 pycom10g05630
rosa_chinensis	RchiOBHm_Chr6g0265701 RchiOBHm_Chr6g0265771
rosa_laevigata	RLG00000014161 RLG00000014165
rosa_multiflora	Rmu_co8114364.1_g000001 Rmu_sc0000208.1_g000028 Rmu_sc0008535.1_g000015
rosa_roxburghii	Rroxscaffold_175G00432510 Rroxscaffold_175G00432560 Rroxscaffold_7G00202430
rosa_rugosa	Rorug06G0018500 Rorug06G0019000
rosa_samantha	Rh6AG140700 Rh6AG141500 Rh6BG141100 Rh6BG141400 Rh6CG137700 Rh6CG138000 Rh6DG124600 Rh6DG125000
rosa_wichuraiana	Rw6G012170 Rw6G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	28
AccI	GTMKAC	1 cut(s)	890
AccII	CGCG	1 cut(s)	948
AclWI	GGATC	1 cut(s)	798
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	5 cut(s)	155, 714, 732, 831, 950
AcyI	GRCGYC	2 cut(s)	25, 489
AfaI	GTAC	3 cut(s)	306, 379, 385
AfiI	CCNNNNNNNGG	2 cut(s)	833, 1035
AgsI	TTSAA	5 cut(s)	100, 139, 338, 347, 531
AluBI	AGCT	8 cut(s)	64, 350, 358, 853, 860, 928, 970, 1021
AluI	AGCT	8 cut(s)	64, 350, 358, 853, 860, 928, 970, 1021
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	798
AoxI	GGCC	1 cut(s)	424
ApaI	GGGCCC	1 cut(s)	428
ApeKI	GCWGC	3 cut(s)	358, 860, 935
ApoI	RAATTY	1 cut(s)	91
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
Asp700I	GAANNNNTTC	1 cut(s)	95
AspS9I	GGNCC	4 cut(s)	424, 425, 475, 725
AsuHPI	GGTGA	2 cut(s)	197, 848
AsuII	TTCGAA	1 cut(s)	89
AsuNHI	GCTAGC	1 cut(s)	350
AvaII	GGWCC	2 cut(s)	475, 725
BaeGI	GKGCMC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	428
BbsI	GAAGAC	1 cut(s)	290
BbvCI	CCTCAGC	1 cut(s)	906
BbvI	GCAGC	3 cut(s)	345, 847, 922
BccI	CCATC	2 cut(s)	14, 448
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	4 cut(s)	351, 440, 501, 1025
BisI	GCNGC	3 cut(s)	359, 861, 936
BlsI	GCNGC	3 cut(s)	360, 862, 937
Bme18I	GGWCC	2 cut(s)	475, 725
BmgT120I	GGNCC	4 cut(s)	424, 425, 475, 725
BmiI	GGNNCC	3 cut(s)	426, 726, 727
BmrI	ACTGGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	4
BmtI	GCTAGC	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	906
Bpu14I	TTCGAA	1 cut(s)	89
Bsa29I	ATCGAT	1 cut(s)	736
BsaHI	GRCGYC	2 cut(s)	25, 489
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	4 cut(s)	428, 828, 873, 957
Bsc4I	CCNNNNNNNGG	2 cut(s)	833, 1035
Bse1I	ACTGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	526
BseCI	ATCGAT	1 cut(s)	736
BseDI	CCNNGG	4 cut(s)	428, 828, 873, 957
BseGI	GGATG	2 cut(s)	52, 159
BseLI	CCNNNNNNNGG	2 cut(s)	833, 1035
BseMI	GCAATG	1 cut(s)	526
BseMII	CTCAG	4 cut(s)	33, 189, 768, 897
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	2 cut(s)	692, 1031
BseSI	GKGCMC	1 cut(s)	428
BseXI	GCAGC	3 cut(s)	345, 847, 922
Bsh1236I	CGCG	1 cut(s)	948
BshFI	GGCC	1 cut(s)	426
BshVI	ATCGAT	1 cut(s)	736
BsiSI	CCGG	1 cut(s)	516
BslFI	GGGAC	1 cut(s)	711
BslI	CCNNNNNNNGG	2 cut(s)	833, 1035
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	711
BsnI	GGCC	1 cut(s)	426
Bso31I	GGTCTC	1 cut(s)	194
Bsp119I	TTCGAA	1 cut(s)	89
Bsp120I	GGGCCC	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	428
Bsp143I	GATC	4 cut(s)	436, 737, 790, 943
Bsp19I	CCATGG	2 cut(s)	428, 828
BspANI	GGCC	1 cut(s)	426
BspCNI	CTCAG	4 cut(s)	34, 190, 767, 898
BspDI	ATCGAT	1 cut(s)	736
BspFNI	CGCG	1 cut(s)	948
BspLI	GGNNCC	3 cut(s)	426, 726, 727
BspOI	GCTAGC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	798
BspT104I	TTCGAA	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	526
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	4 cut(s)	428, 828, 873, 957
BssMI	GATC	4 cut(s)	436, 737, 790, 943
BssNI	GRCGYC	2 cut(s)	25, 489
BssT1I	CCWWGG	4 cut(s)	428, 828, 873, 957
Bst4CI	ACNGT	7 cut(s)	119, 185, 212, 262, 479, 819, 888
BstACI	GRCGYC	2 cut(s)	25, 489
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstBI	TTCGAA	1 cut(s)	89
BstC8I	GCNNGC	3 cut(s)	352, 356, 903
BstDEI	CTNAG	5 cut(s)	42, 198, 754, 854, 906
BstDSI	CCRYGG	2 cut(s)	428, 828
BstF5I	GGATG	2 cut(s)	52, 159
BstFNI	CGCG	1 cut(s)	948
BstKTI	GATC	4 cut(s)	439, 740, 793, 946
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	4 cut(s)	436, 737, 790, 943
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 869
BstNSI	RCATGY	1 cut(s)	784
BstSLI	GKGCMC	1 cut(s)	428
BstUI	CGCG	1 cut(s)	948
BstV1I	GCAGC	3 cut(s)	345, 847, 922
BstV2I	GAAGAC	1 cut(s)	290
Bsu15I	ATCGAT	1 cut(s)	736
BsuRI	GGCC	1 cut(s)	426
BsuTUI	ATCGAT	1 cut(s)	736
BtgI	CCRYGG	2 cut(s)	428, 828
BtsCI	GGATG	2 cut(s)	52, 159
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	2 cut(s)	258, 288
Cac8I	GCNNGC	3 cut(s)	352, 356, 903
Cfr13I	GGNCC	4 cut(s)	424, 425, 475, 725
ClaI	ATCGAT	1 cut(s)	736
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	3 cut(s)	305, 378, 384
CviAII	CATG	4 cut(s)	429, 614, 781, 829
CviQI	GTAC	3 cut(s)	305, 378, 384
DdeI	CTNAG	5 cut(s)	42, 198, 754, 854, 906
DpnI	GATC	4 cut(s)	438, 739, 792, 945
DpnII	GATC	4 cut(s)	436, 737, 790, 943
Eco130I	CCWWGG	4 cut(s)	428, 828, 873, 957
Eco24I	GRGCYC	1 cut(s)	428
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	475, 725
Eco57I	CTGAAG	5 cut(s)	155, 714, 732, 831, 950
EcoO109I	RGGNCCY	2 cut(s)	424, 725
EcoRI	GAATTC	1 cut(s)	91
EcoT14I	CCWWGG	4 cut(s)	428, 828, 873, 957
EcoT22I	ATGCAT	1 cut(s)	786
EcoT38I	GRGCYC	1 cut(s)	428
ErhI	CCWWGG	4 cut(s)	428, 828, 873, 957
FaeI	CATG	4 cut(s)	432, 617, 784, 832
FalI	AAGNNNNNCTT	2 cut(s)	1005, 1037
FaqI	GGGAC	1 cut(s)	711
FatI	CATG	4 cut(s)	428, 613, 780, 828
FauNDI	CATATG	1 cut(s)	786
FblI	GTMKAC	1 cut(s)	890
Fnu4HI	GCNGC	3 cut(s)	359, 861, 936
FokI	GGATG	2 cut(s)	59, 146
FriOI	GRGCYC	1 cut(s)	428
Fsp4HI	GCNGC	3 cut(s)	359, 861, 936
FspBI	CTAG	4 cut(s)	351, 440, 501, 1025
GluI	GCNGC	3 cut(s)	359, 861, 936
HaeIII	GGCC	1 cut(s)	426
HapII	CCGG	1 cut(s)	516
HgaI	GACGC	1 cut(s)	497
Hin1I	GRCGYC	2 cut(s)	25, 489
Hin1II	CATG	4 cut(s)	432, 617, 784, 832
HincII	GTYRAC	3 cut(s)	181, 487, 822
HindII	GTYRAC	3 cut(s)	181, 487, 822
HindIII	AAGCTT	2 cut(s)	62, 851
HinfI	GANTC	8 cut(s)	527, 557, 572, 587, 602, 632, 647, 743
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	2 cut(s)	197, 848
Hpy166II	GTNNAC	4 cut(s)	181, 487, 822, 891
Hpy188III	TCNNGA	5 cut(s)	197, 237, 275, 440, 941
Hpy8I	GTNNAC	4 cut(s)	181, 487, 822, 891
HpyCH4III	ACNGT	7 cut(s)	119, 185, 212, 262, 479, 819, 888
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	4 cut(s)	8, 149, 293, 784
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 869
HpyF3I	CTNAG	5 cut(s)	42, 198, 754, 854, 906
HpySE526I	ACGT	1 cut(s)	25
Hsp92I	GRCGYC	2 cut(s)	25, 489
Hsp92II	CATG	4 cut(s)	432, 617, 784, 832
KflI	GGGWCCC	1 cut(s)	725
Kzo9I	GATC	4 cut(s)	436, 737, 790, 943
LmnI	GCTCC	1 cut(s)	1018
Lsp1109I	GCAGC	3 cut(s)	345, 847, 922
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	4 cut(s)	351, 440, 501, 1025
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	4 cut(s)	438, 739, 792, 945
MboI	GATC	4 cut(s)	436, 737, 790, 943
MboII	GAAGA	8 cut(s)	64, 295, 463, 694, 707, 710, 725, 824
MhlI	GDGCHC	1 cut(s)	428
MluCI	AATT	5 cut(s)	84, 91, 190, 342, 463
MlyI	GAGTC	5 cut(s)	566, 581, 611, 641, 656
MmeI	TCCRAC	4 cut(s)	187, 600, 615, 645
Mph1103I	ATGCAT	1 cut(s)	786
MroXI	GAANNNNTTC	1 cut(s)	95
MseI	TTAA	3 cut(s)	75, 951, 1008
MslI	CAYNNNNRTG	1 cut(s)	785
MspI	CCGG	1 cut(s)	516
MvnI	CGCG	1 cut(s)	948
MwoI	GCNNNNNNNGC	2 cut(s)	14, 869
NcoI	CCATGG	2 cut(s)	428, 828
NdeI	CATATG	1 cut(s)	786
NdeII	GATC	4 cut(s)	436, 737, 790, 943
NheI	GCTAGC	1 cut(s)	350
NlaIII	CATG	4 cut(s)	432, 617, 784, 832
NlaIV	GGNNCC	3 cut(s)	426, 726, 727
NmuCI	GTSAC	1 cut(s)	185
NsiI	ATGCAT	1 cut(s)	786
NspI	RCATGY	1 cut(s)	784
NspV	TTCGAA	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	95
PfeI	GAWTC	3 cut(s)	527, 587, 743
PkrI	GCNGC	3 cut(s)	360, 862, 937
PleI	GAGTC	5 cut(s)	565, 580, 610, 640, 655
PpsI	GAGTC	5 cut(s)	565, 580, 610, 640, 655
PpuMI	RGGWCCY	1 cut(s)	725
Psp5II	RGGWCCY	1 cut(s)	725
PspN4I	GGNNCC	3 cut(s)	426, 726, 727
PspOMI	GGGCCC	1 cut(s)	424
PspPI	GGNCC	4 cut(s)	424, 425, 475, 725
PspPPI	RGGWCCY	1 cut(s)	725
RsaI	GTAC	3 cut(s)	306, 379, 385
RsaNI	GTAC	3 cut(s)	305, 378, 384
RseI	CAYNNNNRTG	1 cut(s)	785
SaqAI	TTAA	3 cut(s)	75, 951, 1008
SatI	GCNGC	3 cut(s)	359, 861, 936
Sau3AI	GATC	4 cut(s)	436, 737, 790, 943
Sau96I	GGNCC	4 cut(s)	424, 425, 475, 725
SchI	GAGTC	5 cut(s)	566, 581, 611, 641, 656
SduI	GDGCHC	1 cut(s)	428
SfaNI	GCATC	1 cut(s)	4
SfuI	TTCGAA	1 cut(s)	89
SinI	GGWCC	2 cut(s)	475, 725
SmiMI	CAYNNNNRTG	1 cut(s)	785
Sse9I	AATT	5 cut(s)	84, 91, 190, 342, 463
SspMI	CTAG	4 cut(s)	351, 440, 501, 1025
StyI	CCWWGG	4 cut(s)	428, 828, 873, 957
TaaI	ACNGT	7 cut(s)	119, 185, 212, 262, 479, 819, 888
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	3 cut(s)	89, 590, 736
TasI	AATT	5 cut(s)	84, 91, 190, 342, 463
TatI	WGTACW	2 cut(s)	304, 383
TfiI	GAWTC	3 cut(s)	527, 587, 743
Tru1I	TTAA	3 cut(s)	75, 951, 1008
Tru9I	TTAA	3 cut(s)	75, 951, 1008
TscAI	CASTG	2 cut(s)	265, 295
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	3 cut(s)	358, 860, 935
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	5 cut(s)	208, 464, 600, 734, 1011
TspGWI	ACGGA	1 cut(s)	989
TspRI	CASTG	2 cut(s)	265, 295
VpaK11BI	GGWCC	2 cut(s)	475, 725
XapI	RAATTY	1 cut(s)	91
XbaI	TCTAGA	1 cut(s)	439
XceI	RCATGY	1 cut(s)	784
XmiI	GTMKAC	1 cut(s)	890
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	4 cut(s)	351, 440, 501, 1025
ZraI	GACGTC	1 cut(s)	26
Zsp2I	ATGCAT	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.