Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001414

Physical Location & Seq

Genomic Coordinates Forward (+)

22598459 .. 22611278

Gene Structure 12820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG141400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGGCCATGTGCTTCGAGACACAGCAGACAGTGCGCAAGCCAAAGCTGCCAAAGGGAAAGGAATCAAAACAGCAACTCCATTAACAAAAAAGCAAGCAGCTGCTACTATTTCGAGTCAAGAATTTGAATACAAGGAAATTGATGAGGTTTTGAAATACTATCCCCAAGGCCATCATGGAGTTGATAAGGAGGGAAGACCAGTCTACATTGAGAGACTTGGTCAAGTGGATTCAACCAAGCTGATGCAAGTCACAACAATGGACCGTTATGTAAAATACCATGTACGGGAGTTTGAGAGGACCTTCGTCCATAAATTCCCTGCATGTTCCATTGCAGCAAAGAAGCACATTGATCAGAGCACCACTATTCTTGATGTACAAGGAGTGACCCTGAACCGTATGTTCATCATTAATGCTGGTTCTGGATTTAGACTTTTGTGGAACACTGTCAAATCTTTCCTTGATCCCAAGACCACTGCAAAAATCAATGTTCTTGGAAACAAATACCAGAGCAAGTTGCTTGAAATAATTGATGCTAGTGAGCTGCCAGAGTTTTTGGGTGGCACTTGTACTTGTGCAGATAAGGGTGGTTGCATGCGTTCCGATAAAGGCCCATGGAATGACCCAGATATAATGAAGATGGTTCACAATGGTGAGGGCAAATGCACAAGGAGAACATTATCAGGCATTGAGGAGAAGATAATCTCTGAAGATGAAATGTTTTACTCCAAGACATGTGATTCTTTCAACTCAAAAATAGCTCAAATGGAACATACAAAACTCTCTCATGTTCCTAAACAAGTTTCATTCACCAAAAAATCCAGTAAGGACTATGAGTATGACAAGTTGATGCCAATGGTTGACAAGACGGTGGATGCAACTTGGCCTAAACCAGTTCATTATGATAAATTTGCCCACAGTCAAGATTGCTTCCCCTCGCATAATGCTTGCAAGTCTTCTGAAGGACTAAGCAGTTTCTTACTTTCTGGAATCATGGCCTTCATCATGGGAATTGTCACCATGATCCGATTGACACGAGACATGCCAAGGAAACTCACTGAGGCAGCCCTCTATGGAAGCCCTGCTTACTGCAATGGAATGGGGATGAAAGCCAAGCAGTTGCCTGCATCATCCATCTCCAGTGACACATATATGAACATGATGAAGCGCATGGCCGAGTTGGAGGAGAAAGTGAAAGTTCTCAGCACGAAACCAACTATCATGCCCCCTGAGAAAGAGGAAATGTTGAACAATGCTCTCAACCGAGCCACAGCCTTGGAACAAGAGCTTTCAGCAACCAAGAAGGCACTTGATGACGCCCTGGTCCGACAGAATGAGCTTATAGCCTACCTTGATAAGAAGAAAAAGAAGAAGAAACTGAAATTGAACCCATTTAAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008525 GO:0008526 GO:0008610 GO:0008654 GO:0009058 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019637 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032501 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044464 GO:0044703 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048193 GO:0048367 GO:0048468 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0061458 GO:0071702 GO:0071704 GO:0071840 GO:0090407 GO:0090567 GO:0097164 GO:0120009 GO:0120010 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

467

Amino Acids

52.62

Weight (kDa)

9.2

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	52 - 134	8e-07	CRAL/TRIO domain
CRAL_TRIO	PF00650	130 - 188	6.3e-13	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16380 AT2G16380 AT2G16380 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT4G34580 AT4G34580 AT4G39180 AT4G39180 AT4G39180
fragaria_vesca	FvH4_2g09420 FvH4_2g09420 FvH4_2g09420 FvH4_2g09490 FvH4_2g09490
malus_domestica	MD05G1062700.v1.1 MD05G1062800.v1.1 MD05G1062900.v1.1 MD10G1070400.v1.1 MD10G1070500.v1.1
prunus_persica	Prupe.8G092000_v2.0.a1 Prupe.8G092100_v2.0.a1 Prupe.8G092200_v2.0.a1
pyrus_communis	pycom05g05440 pycom10g05620 pycom10g05630
rosa_chinensis	RchiOBHm_Chr6g0265701 RchiOBHm_Chr6g0265771
rosa_laevigata	RLG00000014161 RLG00000014165
rosa_multiflora	Rmu_co8114364.1_g000001 Rmu_sc0000208.1_g000028 Rmu_sc0008535.1_g000015
rosa_roxburghii	Rroxscaffold_175G00432510 Rroxscaffold_175G00432560 Rroxscaffold_7G00202430
rosa_rugosa	Rorug06G0018500 Rorug06G0019000
rosa_samantha	Rh6AG140700 Rh6AG141500 Rh6BG141100 Rh6BG141400 Rh6CG137700 Rh6CG138000 Rh6DG124600 Rh6DG125000
rosa_wichuraiana	Rw6G012170 Rw6G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1322
Acc16I	TGCGCA	1 cut(s)	36
AccI	GTMKAC	1 cut(s)	204
AclWI	GGATC	2 cut(s)	458, 1018
AcoI	YGGCCR	1 cut(s)	1173
AcsI	RAATTY	3 cut(s)	122, 314, 908
AcuI	CTGAAG	2 cut(s)	729, 981
AcyI	GRCGYC	1 cut(s)	1317
AfaI	GTAC	3 cut(s)	285, 378, 571
AfiI	CCNNNNNNNGG	1 cut(s)	286
AflIII	ACRYGT	1 cut(s)	734
AgsI	TTSAA	7 cut(s)	128, 154, 234, 524, 748, 1249, 1387
AjnI	CCWGG	1 cut(s)	1320
AleI	CACNNNNGTG	1 cut(s)	651
AluBI	AGCT	7 cut(s)	47, 101, 241, 544, 761, 1288, 1339
AluI	AGCT	7 cut(s)	47, 101, 241, 544, 761, 1288, 1339
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	3 cut(s)	12, 208, 1032
AlwI	GGATC	2 cut(s)	458, 1018
AoxI	GGCC	6 cut(s)	4, 169, 610, 884, 996, 1173
ApeKI	GCWGC	6 cut(s)	47, 98, 101, 335, 544, 1064
ApoI	RAATTY	3 cut(s)	122, 314, 908
AseI	ATTAAT	1 cut(s)	411
AspLEI	GCGC	2 cut(s)	37, 1170
AspS9I	GGNCC	5 cut(s)	4, 262, 300, 611, 1324
AsuHPI	GGTGA	3 cut(s)	665, 802, 1009
AvaII	GGWCC	3 cut(s)	262, 300, 1324
BauI	CACGAG	1 cut(s)	1035
BbsI	GAAGAC	2 cut(s)	202, 948
Bbv12I	GWGCWC	1 cut(s)	362
BbvI	GCAGC	6 cut(s)	34, 88, 110, 347, 531, 1076
BccI	CCATC	3 cut(s)	180, 634, 1142
BciT130I	CCWGG	1 cut(s)	1322
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	3 cut(s)	12, 208, 1032
BfaI	CTAG	1 cut(s)	537
BisI	GCNGC	6 cut(s)	48, 99, 102, 336, 545, 1065
BlsI	GCNGC	6 cut(s)	49, 100, 103, 337, 546, 1066
Bme1390I	CCNGG	1 cut(s)	1322
Bme18I	GGWCC	3 cut(s)	262, 300, 1324
BmgT120I	GGNCC	5 cut(s)	4, 262, 300, 611, 1324
BmrFI	CCNGG	1 cut(s)	1322
BmsI	GCATC	5 cut(s)	234, 523, 840, 865, 1136
BoxI	GACNNNNGTC	1 cut(s)	305
BpiI	GAAGAC	2 cut(s)	202, 948
BpmI	CTGGAG	1 cut(s)	1123
BsaHI	GRCGYC	1 cut(s)	1317
BsaJI	CCNNGG	5 cut(s)	166, 614, 1046, 1275, 1320
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse1I	ACTGG	4 cut(s)	200, 822, 893, 1140
Bse3DI	GCAATG	2 cut(s)	330, 1099
BseBI	CCWGG	1 cut(s)	1322
BseDI	CCNNGG	5 cut(s)	166, 614, 1046, 1275, 1320
BseGI	GGATG	3 cut(s)	880, 1110, 1130
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMI	GCAATG	2 cut(s)	330, 1099
BseMII	CTCAG	3 cut(s)	1050, 1216, 1221
BseNI	ACTGG	4 cut(s)	200, 822, 893, 1140
BseRI	GAGGAG	2 cut(s)	707, 1199
BseXI	GCAGC	6 cut(s)	34, 88, 110, 347, 531, 1076
BsgI	GTGCAG	1 cut(s)	597
BshFI	GGCC	6 cut(s)	6, 171, 612, 886, 998, 1175
BsiHKAI	GWGCWC	1 cut(s)	362
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	3 cut(s)	12, 208, 1032
BsnI	GGCC	6 cut(s)	6, 171, 612, 886, 998, 1175
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	352, 463, 1023
Bsp19I	CCATGG	1 cut(s)	614
BspANI	GGCC	6 cut(s)	6, 171, 612, 886, 998, 1175
BspCNI	CTCAG	3 cut(s)	1051, 1215, 1222
BspPI	GGATC	2 cut(s)	458, 1018
BsrDI	GCAATG	2 cut(s)	330, 1099
BsrGI	TGTACA	1 cut(s)	376
BsrI	ACTGG	4 cut(s)	200, 822, 893, 1140
BssECI	CCNNGG	5 cut(s)	166, 614, 1046, 1275, 1320
BssMI	GATC	3 cut(s)	352, 463, 1023
BssNI	GRCGYC	1 cut(s)	1317
BssSI	CACGAG	1 cut(s)	1035
BssT1I	CCWWGG	4 cut(s)	166, 614, 1046, 1275
Bst2BI	CACGAG	1 cut(s)	1035
Bst2UI	CCWGG	1 cut(s)	1322
Bst4CI	ACNGT	6 cut(s)	32, 266, 398, 448, 871, 920
BstACI	GRCGYC	1 cut(s)	1317
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstAUI	TGTACA	1 cut(s)	376
BstC8I	GCNNGC	5 cut(s)	39, 96, 596, 949, 1125
BstDEI	CTNAG	4 cut(s)	968, 1059, 1202, 1230
BstDSI	CCRYGG	1 cut(s)	614
BstF5I	GGATG	3 cut(s)	880, 1110, 1130
BstHHI	GCGC	2 cut(s)	37, 1170
BstKTI	GATC	3 cut(s)	355, 466, 1026
BstMAI	GTCTC	3 cut(s)	12, 208, 1032
BstMBI	GATC	3 cut(s)	352, 463, 1023
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 47
BstNI	CCWGG	1 cut(s)	1322
BstNSI	RCATGY	4 cut(s)	327, 598, 738, 1045
BstPAI	GACNNNNGTC	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	1320
BstV1I	GCAGC	6 cut(s)	34, 88, 110, 347, 531, 1076
BstV2I	GAAGAC	2 cut(s)	202, 948
BstXI	CCANNNNNNTGG	2 cut(s)	1276, 1398
BsuRI	GGCC	6 cut(s)	6, 171, 612, 886, 998, 1175
BtgI	CCRYGG	1 cut(s)	614
BtsCI	GGATG	3 cut(s)	880, 1110, 1130
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	5 cut(s)	37, 444, 474, 1056, 1147
Cac8I	GCNNGC	5 cut(s)	39, 96, 596, 949, 1125
CfoI	GCGC	2 cut(s)	37, 1170
Cfr13I	GGNCC	5 cut(s)	4, 262, 300, 611, 1324
CseI	GACGC	1 cut(s)	1325
Csp6I	GTAC	3 cut(s)	284, 377, 570
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviQI	GTAC	3 cut(s)	284, 377, 570
DdeI	CTNAG	4 cut(s)	968, 1059, 1202, 1230
DpnI	GATC	3 cut(s)	354, 465, 1025
DpnII	GATC	3 cut(s)	352, 463, 1023
DraI	TTTAAA	1 cut(s)	1396
DrdI	GACNNNNNNGTC	1 cut(s)	1322
DseDI	GACNNNNNNGTC	1 cut(s)	1322
EaeI	YGGCCR	1 cut(s)	1173
Eco130I	CCWWGG	4 cut(s)	166, 614, 1046, 1275
Eco47I	GGWCC	3 cut(s)	262, 300, 1324
Eco57I	CTGAAG	2 cut(s)	729, 981
EcoO109I	RGGNCCY	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	1320
EcoT14I	CCWWGG	4 cut(s)	166, 614, 1046, 1275
ErhI	CCWWGG	4 cut(s)	166, 614, 1046, 1275
FalI	AAGNNNNNCTT	2 cut(s)	1069, 1101
FbaI	TGATCA	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	6 cut(s)	48, 99, 102, 336, 545, 1065
FokI	GGATG	3 cut(s)	887, 1117, 1117
Fsp4HI	GCNGC	6 cut(s)	48, 99, 102, 336, 545, 1065
FspBI	CTAG	1 cut(s)	537
FspI	TGCGCA	1 cut(s)	36
GlaI	GCGC	2 cut(s)	36, 1169
GluI	GCNGC	6 cut(s)	48, 99, 102, 336, 545, 1065
GsuI	CTGGAG	1 cut(s)	1123
HaeIII	GGCC	6 cut(s)	6, 171, 612, 886, 998, 1175
HgaI	GACGC	1 cut(s)	1325
HhaI	GCGC	2 cut(s)	37, 1170
Hin1I	GRCGYC	1 cut(s)	1317
Hin6I	GCGC	2 cut(s)	35, 1168
HinP1I	GCGC	2 cut(s)	35, 1168
HincII	GTYRAC	1 cut(s)	862
HindII	GTYRAC	1 cut(s)	862
HinfI	GANTC	5 cut(s)	63, 115, 230, 740, 990
HphI	GGTGA	3 cut(s)	665, 802, 1009
Hpy166II	GTNNAC	3 cut(s)	205, 646, 862
Hpy188I	TCNGA	6 cut(s)	357, 604, 709, 961, 1028, 1328
Hpy188III	TCNNGA	6 cut(s)	17, 119, 371, 423, 923, 987
Hpy8I	GTNNAC	3 cut(s)	205, 646, 862
HpyAV	CCTTC	4 cut(s)	313, 956, 1009, 1297
HpyCH4III	ACNGT	6 cut(s)	32, 266, 398, 448, 871, 920
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 47
HpyF3I	CTNAG	4 cut(s)	968, 1059, 1202, 1230
Hsp92I	GRCGYC	1 cut(s)	1317
HspAI	GCGC	2 cut(s)	35, 1168
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	352, 463, 1023
Lsp1109I	GCAGC	6 cut(s)	34, 88, 110, 347, 531, 1076
LweI	GCATC	5 cut(s)	234, 523, 840, 865, 1136
MaeI	CTAG	1 cut(s)	537
MaeIII	GTNAC	4 cut(s)	250, 385, 1015, 1142
MalI	GATC	3 cut(s)	354, 465, 1025
MboI	GATC	3 cut(s)	352, 463, 1023
MboII	GAAGA	8 cut(s)	207, 649, 709, 722, 948, 1372, 1381, 1384
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	7 cut(s)	122, 138, 314, 528, 908, 1011, 1382
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	2 cut(s)	1161, 1351
MseI	TTAA	3 cut(s)	83, 411, 1395
MslI	CAYNNNNRTG	4 cut(s)	257, 651, 1151, 1396
MspA1I	CMGCKG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	1322
MvaI	CCWGG	1 cut(s)	1322
MwoI	GCNNNNNNNGC	2 cut(s)	32, 47
NcoI	CCATGG	1 cut(s)	614
NdeII	GATC	3 cut(s)	352, 463, 1023
NmeAIII	GCCGAG	1 cut(s)	1201
NmuCI	GTSAC	4 cut(s)	250, 385, 1015, 1142
NsbI	TGCGCA	1 cut(s)	36
NspI	RCATGY	4 cut(s)	327, 598, 738, 1045
OliI	CACNNNNGTG	1 cut(s)	651
PaeI	GCATGC	1 cut(s)	598
PciI	ACATGT	1 cut(s)	734
PfeI	GAWTC	4 cut(s)	63, 230, 740, 990
PflFI	GACNNNGTC	1 cut(s)	219
PkrI	GCNGC	6 cut(s)	49, 100, 103, 337, 546, 1066
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PpuMI	RGGWCCY	1 cut(s)	300
PscI	ACATGT	1 cut(s)	734
PshAI	GACNNNNGTC	1 cut(s)	305
PshBI	ATTAAT	1 cut(s)	411
Psp5II	RGGWCCY	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	1320
PspGI	CCWGG	1 cut(s)	1320
PspPI	GGNCC	5 cut(s)	4, 262, 300, 611, 1324
PspPPI	RGGWCCY	1 cut(s)	300
PsyI	GACNNNGTC	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	3 cut(s)	285, 378, 571
RsaNI	GTAC	3 cut(s)	284, 377, 570
RseI	CAYNNNNRTG	4 cut(s)	257, 651, 1151, 1396
SaqAI	TTAA	3 cut(s)	83, 411, 1395
SatI	GCNGC	6 cut(s)	48, 99, 102, 336, 545, 1065
Sau3AI	GATC	3 cut(s)	352, 463, 1023
Sau96I	GGNCC	5 cut(s)	4, 262, 300, 611, 1324
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	1322
SduI	GDGCHC	1 cut(s)	362
SfaNI	GCATC	5 cut(s)	234, 523, 840, 865, 1136
SinI	GGWCC	3 cut(s)	262, 300, 1324
SmiI	ATTTAAAT	1 cut(s)	1396
SmiMI	CAYNNNNRTG	4 cut(s)	257, 651, 1151, 1396
SphI	GCATGC	1 cut(s)	598
Sse9I	AATT	7 cut(s)	122, 138, 314, 528, 908, 1011, 1382
SspMI	CTAG	1 cut(s)	537
StyD4I	CCNGG	1 cut(s)	1320
StyI	CCWWGG	4 cut(s)	166, 614, 1046, 1275
SwaI	ATTTAAAT	1 cut(s)	1396
TaaI	ACNGT	6 cut(s)	32, 266, 398, 448, 871, 920
TaqI	TCGA	2 cut(s)	16, 113
TasI	AATT	7 cut(s)	122, 138, 314, 528, 908, 1011, 1382
TatI	WGTACW	2 cut(s)	376, 569
TfiI	GAWTC	4 cut(s)	63, 230, 740, 990
Tru1I	TTAA	3 cut(s)	83, 411, 1395
Tru9I	TTAA	3 cut(s)	83, 411, 1395
TscAI	CASTG	5 cut(s)	37, 451, 481, 1063, 1147
TseFI	GTSAC	4 cut(s)	250, 385, 1015, 1142
TseI	GCWGC	6 cut(s)	47, 98, 101, 335, 544, 1064
Tsp45I	GTSAC	4 cut(s)	250, 385, 1015, 1142
TspDTI	ATGAA	9 cut(s)	394, 650, 729, 795, 887, 991, 1121, 1169, 1178
TspRI	CASTG	5 cut(s)	37, 451, 481, 1063, 1147
Tth111I	GACNNNGTC	1 cut(s)	219
VpaK11BI	GGWCC	3 cut(s)	262, 300, 1324
VspI	ATTAAT	1 cut(s)	411
XapI	RAATTY	3 cut(s)	122, 314, 908
XceI	RCATGY	4 cut(s)	327, 598, 738, 1045
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.