RLG00000014165

Phosphatidylinositol phosphatidylcholine transfer protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
48474852 .. 48479327
4476 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014165

Sequence Viewer

Length: 1329 bp
ATGTCTGCACCTGATACTGATGGACGTCCTGCTGAAAACTCTGAGGATGAGAAGAAAACAAAGCTTGGGTCTTTTAAGAAGGCAATTTCGAATTCCTTCAATAAGGGCCGCAGGAACAGTAAGGACTTCGAATTCAAGGAAATTGATGAAGTCTTGAAATATTATCCACAAGGGCATCATGGAGTTGATAAGGATGGACGCCCTGTCTATATTGAGAAACTTGGTCAAGTAGATTCCAACAAGCTGTTGCAAGTGACAACAATGGACAGATATGTGAAGTACCATGTACGAGAGTTTGAGAGGACGTTTGTGCATAAATTCCCTGCCTGTTCCATTGCGGCGAAGAAGCACATTGATCAGAGCACTACCATTTTGGATGTACAAGGAGTGGGGCTGACAAGTTTGAACAAATCTGCAAGGGAACTCATCCAACGCCTTCAGAAAGTTGACGGTGACAATTATCCTGAGGTATTGTTTCATGTTTTTAAAACTTTTCTGGGTTTCCTTGTACTGGGAAACCAATACCAAAGCAAGTTGCTTGAAATAATTGAAGCTAGCGAGCTGCCAGAGTTTTTGGGAGGTACTTGTACTTGTTCTGATAAGGGTGGCTGTATGCTTTCTGATAAGGGCCCATGGAATGATCTAGAAATAATGAAGATGGTTCAGAATTATGGCGAGGACCGTGAGGTTGACGCCAAATCCTCTAGCACAACTATATCCGGCAATGTGGATTCAAGCAATAAGGAGTTGGGCAAAAAGGAGTCAGGCAAAAAGGAGTCTGGCAAAAATGAATCGAGTAAAAATGAGTCGGGCAAACATGAGTTGGACAAGAAGGAGTCGGACAAGAAGGAGTTGGACAAGAAGGAGGAGAAGAAGGTCGCTGAAGAAGAAAAAATCTCTGAAGATATGAAGGGTCCCCCAAATCGATCTGATTCAGTCTGCTCAGAGGCTTTTTTGGAGGCTAATGACATGCATATGGATCATCTCTCTGCTGTGCCTGAAGAACTGTCAACTCCCATGGGAGGTGAAAAAGAGGAAAAGCTTAGAGCTGCTCTTACTGCCTTGGAACAACAACTGTCTACAACCAAGCAGGCTGAGGTTGAGAAAGAGCAAAAGCTGAAGGCTGCTCTTGATCGCGTTAATGCCTTGGAACAAGAGCTAACAGAAACCAAGAAGGCACTTGATGAAGCCCGTGTTAAACAAGAGGAGCTTCTAGCCTCTGTTGGGAAGGAAAAGAAAGCCTATTCTGTTGGTGAAGCGCCCCATATAAACATATATGTAGTATGGTGGATTAGTGGCTCAAAGTTTGAGTGGTTCTTATCAGGATGA

Protein Analysis

443

Amino Acids

49.69

Weight (kDa)

5.62

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 53 - 162 6e-10 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 28
AccI GTMKAC 1 cut(s) 1079
AccII CGCG 1 cut(s) 1137
AciI CCGC 2 cut(s) 109, 338
AclWI GGATC 1 cut(s) 987
AcsI RAATTY 3 cut(s) 91, 131, 317
AcuI CTGAAG 5 cut(s) 422, 903, 921, 1020, 1139
AcyI GRCGYC 3 cut(s) 25, 199, 693
AfaI GTAC 6 cut(s) 281, 288, 381, 510, 583, 589
AfiI CCNNNNNNNGG 3 cut(s) 511, 1022, 1224
AgsI TTSAA 7 cut(s) 100, 136, 157, 406, 542, 551, 735
AhdI GACNNNNNGTC 1 cut(s) 203
AluBI AGCT 9 cut(s) 64, 244, 554, 562, 1042, 1049, 1117, 1159, 1210
AluI AGCT 9 cut(s) 64, 244, 554, 562, 1042, 1049, 1117, 1159, 1210
Alw21I GWGCWC 1 cut(s) 365
AlwI GGATC 1 cut(s) 987
AoxI GGCC 2 cut(s) 106, 628
ApaI GGGCCC 1 cut(s) 632
ApeKI GCWGC 3 cut(s) 562, 1049, 1124
ApoI RAATTY 3 cut(s) 91, 131, 317
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 1261
AspS9I GGNCC 5 cut(s) 106, 628, 629, 679, 914
AsuHPI GGTGA 3 cut(s) 464, 1037, 1265
AsuII TTCGAA 2 cut(s) 89, 129
AsuNHI GCTAGC 1 cut(s) 554
AvaII GGWCC 2 cut(s) 679, 914
AxyI CCTNAGG 1 cut(s) 465
BaeGI GKGCMC 1 cut(s) 632
BanII GRGCYC 1 cut(s) 632
Bbv12I GWGCWC 1 cut(s) 365
BbvCI CCTCAGC 1 cut(s) 1095
BbvI GCAGC 3 cut(s) 549, 1036, 1111
BccI CCATC 3 cut(s) 14, 188, 652
BclI TGATCA 1 cut(s) 355
BfaI CTAG 4 cut(s) 555, 644, 705, 1214
BfoI RGCGCY 1 cut(s) 1262
BisI GCNGC 5 cut(s) 109, 339, 563, 1050, 1125
BlsI GCNGC 5 cut(s) 110, 340, 564, 1051, 1126
Bme18I GGWCC 2 cut(s) 679, 914
BmeRI GACNNNNNGTC 1 cut(s) 203
BmgT120I GGNCC 5 cut(s) 106, 628, 629, 679, 914
BmiI GGNNCC 3 cut(s) 630, 915, 916
BmrI ACTGGG 1 cut(s) 521
BmsI GCATC 1 cut(s) 184
BmtI GCTAGC 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 521
Bpu10I CCTNAGC 1 cut(s) 1095
Bpu14I TTCGAA 2 cut(s) 89, 129
Bsa29I ATCGAT 1 cut(s) 925
BsaHI GRCGYC 3 cut(s) 25, 199, 693
BsaJI CCNNGG 4 cut(s) 632, 1017, 1062, 1146
Bsc4I CCNNNNNNNGG 3 cut(s) 511, 1022, 1224
Bse1I ACTGG 1 cut(s) 516
Bse21I CCTNAGG 1 cut(s) 465
Bse3DI GCAATG 2 cut(s) 333, 730
BseCI ATCGAT 1 cut(s) 925
BseDI CCNNGG 4 cut(s) 632, 1017, 1062, 1146
BseGI GGATG 4 cut(s) 52, 199, 382, 426
BseLI CCNNNNNNNGG 3 cut(s) 511, 1022, 1224
BseMI GCAATG 2 cut(s) 333, 730
BseMII CTCAG 4 cut(s) 33, 456, 957, 1086
BseNI ACTGG 1 cut(s) 516
BseRI GAGGAG 2 cut(s) 881, 1220
BseSI GKGCMC 1 cut(s) 632
BseXI GCAGC 3 cut(s) 549, 1036, 1111
Bsh1236I CGCG 1 cut(s) 1137
BshFI GGCC 2 cut(s) 108, 630
BshVI ATCGAT 1 cut(s) 925
BsiHKAI GWGCWC 1 cut(s) 365
BsiSI CCGG 1 cut(s) 720
BslFI GGGAC 1 cut(s) 900
BslI CCNNNNNNNGG 3 cut(s) 511, 1022, 1224
BsmFI GGGAC 1 cut(s) 900
BsnI GGCC 2 cut(s) 108, 630
Bsp119I TTCGAA 2 cut(s) 89, 129
Bsp120I GGGCCC 1 cut(s) 628
Bsp1286I GDGCHC 2 cut(s) 365, 632
Bsp1407I TGTACA 1 cut(s) 379
Bsp143I GATC 5 cut(s) 355, 640, 926, 979, 1132
Bsp19I CCATGG 2 cut(s) 632, 1017
BspACI CCGC 2 cut(s) 109, 338
BspANI GGCC 2 cut(s) 108, 630
BspCNI CTCAG 4 cut(s) 34, 457, 956, 1087
BspDI ATCGAT 1 cut(s) 925
BspFNI CGCG 1 cut(s) 1137
BspLI GGNNCC 3 cut(s) 630, 915, 916
BspOI GCTAGC 1 cut(s) 558
BspPI GGATC 1 cut(s) 987
BspT104I TTCGAA 2 cut(s) 89, 129
BsrDI GCAATG 2 cut(s) 333, 730
BsrGI TGTACA 1 cut(s) 379
BsrI ACTGG 1 cut(s) 516
BssECI CCNNGG 4 cut(s) 632, 1017, 1062, 1146
BssMI GATC 5 cut(s) 355, 640, 926, 979, 1132
BssNI GRCGYC 3 cut(s) 25, 199, 693
BssT1I CCWWGG 4 cut(s) 632, 1017, 1062, 1146
Bst4CI ACNGT 5 cut(s) 119, 452, 683, 1008, 1077
BstACI GRCGYC 3 cut(s) 25, 199, 693
BstAUI TGTACA 1 cut(s) 379
BstBI TTCGAA 2 cut(s) 89, 129
BstC8I GCNNGC 3 cut(s) 556, 560, 1092
BstDEI CTNAG 5 cut(s) 42, 465, 943, 1043, 1095
BstDSI CCRYGG 2 cut(s) 632, 1017
BstF5I GGATG 4 cut(s) 52, 199, 382, 426
BstFNI CGCG 1 cut(s) 1137
BstH2I RGCGCY 1 cut(s) 1262
BstHHI GCGC 1 cut(s) 1261
BstKTI GATC 5 cut(s) 358, 643, 929, 982, 1135
BstMBI GATC 5 cut(s) 355, 640, 926, 979, 1132
BstMWI GCNNNNNNNGC 1 cut(s) 1058
BstNSI RCATGY 1 cut(s) 973
BstSLI GKGCMC 1 cut(s) 632
BstUI CGCG 1 cut(s) 1137
BstV1I GCAGC 3 cut(s) 549, 1036, 1111
Bsu15I ATCGAT 1 cut(s) 925
Bsu36I CCTNAGG 1 cut(s) 465
BsuRI GGCC 2 cut(s) 108, 630
BsuTUI ATCGAT 1 cut(s) 925
BtgI CCRYGG 2 cut(s) 632, 1017
BtsCI GGATG 4 cut(s) 52, 199, 382, 426
Cac8I GCNNGC 3 cut(s) 556, 560, 1092
CfoI GCGC 1 cut(s) 1261
Cfr13I GGNCC 5 cut(s) 106, 628, 629, 679, 914
ClaI ATCGAT 1 cut(s) 925
CseI GACGC 2 cut(s) 207, 701
Csp6I GTAC 6 cut(s) 280, 287, 380, 509, 582, 588
CviAII CATG 7 cut(s) 179, 284, 479, 633, 818, 970, 1018
CviQI GTAC 6 cut(s) 280, 287, 380, 509, 582, 588
DdeI CTNAG 5 cut(s) 42, 465, 943, 1043, 1095
DpnI GATC 5 cut(s) 357, 642, 928, 981, 1134
DpnII GATC 5 cut(s) 355, 640, 926, 979, 1132
DraI TTTAAA 1 cut(s) 487
DriI GACNNNNNGTC 1 cut(s) 203
Eam1105I GACNNNNNGTC 1 cut(s) 203
Eco130I CCWWGG 4 cut(s) 632, 1017, 1062, 1146
Eco24I GRGCYC 1 cut(s) 632
Eco47I GGWCC 2 cut(s) 679, 914
Eco57I CTGAAG 5 cut(s) 422, 903, 921, 1020, 1139
Eco81I CCTNAGG 1 cut(s) 465
EcoO109I RGGNCCY 2 cut(s) 628, 914
EcoRI GAATTC 2 cut(s) 91, 131
EcoT14I CCWWGG 4 cut(s) 632, 1017, 1062, 1146
EcoT22I ATGCAT 1 cut(s) 975
EcoT38I GRGCYC 1 cut(s) 632
ErhI CCWWGG 4 cut(s) 632, 1017, 1062, 1146
FaeI CATG 7 cut(s) 182, 287, 482, 636, 821, 973, 1021
FalI AAGNNNNNCTT 2 cut(s) 1194, 1226
FaqI GGGAC 1 cut(s) 900
FatI CATG 7 cut(s) 178, 283, 478, 632, 817, 969, 1017
FauNDI CATATG 1 cut(s) 975
FbaI TGATCA 1 cut(s) 355
FblI GTMKAC 1 cut(s) 1079
Fnu4HI GCNGC 5 cut(s) 109, 339, 563, 1050, 1125
FokI GGATG 4 cut(s) 59, 206, 389, 413
FriOI GRGCYC 1 cut(s) 632
Fsp4HI GCNGC 5 cut(s) 109, 339, 563, 1050, 1125
FspBI CTAG 4 cut(s) 555, 644, 705, 1214
GlaI GCGC 1 cut(s) 1260
GluI GCNGC 5 cut(s) 109, 339, 563, 1050, 1125
HaeII RGCGCY 1 cut(s) 1262
HaeIII GGCC 2 cut(s) 108, 630
HapII CCGG 1 cut(s) 720
HgaI GACGC 2 cut(s) 207, 701
HhaI GCGC 1 cut(s) 1261
Hin1I GRCGYC 3 cut(s) 25, 199, 693
Hin1II CATG 7 cut(s) 182, 287, 482, 636, 821, 973, 1021
Hin6I GCGC 1 cut(s) 1259
HinP1I GCGC 1 cut(s) 1259
HincII GTYRAC 3 cut(s) 448, 691, 1011
HindII GTYRAC 3 cut(s) 448, 691, 1011
HindIII AAGCTT 2 cut(s) 62, 1040
HinfI GANTC 8 cut(s) 233, 731, 761, 776, 791, 806, 836, 932
HpaII CCGG 1 cut(s) 720
HphI GGTGA 3 cut(s) 464, 1037, 1265
Hpy166II GTNNAC 4 cut(s) 448, 691, 1011, 1080
Hpy188III TCNNGA 5 cut(s) 154, 464, 644, 1130, 1323
Hpy8I GTNNAC 4 cut(s) 448, 691, 1011, 1080
HpyCH4III ACNGT 5 cut(s) 119, 452, 683, 1008, 1077
HpyCH4IV ACGT 2 cut(s) 25, 305
HpyCH4V TGCA 5 cut(s) 8, 250, 313, 416, 973
HpyF10VI GCNNNNNNNGC 1 cut(s) 1058
HpyF3I CTNAG 5 cut(s) 42, 465, 943, 1043, 1095
HpySE526I ACGT 2 cut(s) 25, 305
Hsp92I GRCGYC 3 cut(s) 25, 199, 693
Hsp92II CATG 7 cut(s) 182, 287, 482, 636, 821, 973, 1021
HspAI GCGC 1 cut(s) 1259
KflI GGGWCCC 1 cut(s) 914
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 5 cut(s) 355, 640, 926, 979, 1132
LmnI GCTCC 1 cut(s) 1207
Lsp1109I GCAGC 3 cut(s) 549, 1036, 1111
LweI GCATC 1 cut(s) 184
MaeI CTAG 4 cut(s) 555, 644, 705, 1214
MaeII ACGT 2 cut(s) 25, 305
MaeIII GTNAC 2 cut(s) 253, 452
MalI GATC 5 cut(s) 357, 642, 928, 981, 1134
MboI GATC 5 cut(s) 355, 640, 926, 979, 1132
MboII GAAGA 8 cut(s) 64, 355, 667, 883, 896, 899, 914, 1013
MhlI GDGCHC 2 cut(s) 365, 632
MluCI AATT 8 cut(s) 84, 91, 131, 141, 317, 457, 546, 667
MlyI GAGTC 4 cut(s) 770, 785, 815, 845
MmeI TCCRAC 5 cut(s) 261, 454, 804, 819, 834
Mph1103I ATGCAT 1 cut(s) 975
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 4 cut(s) 75, 486, 1140, 1197
MslI CAYNNNNRTG 1 cut(s) 974
MspI CCGG 1 cut(s) 720
MvnI CGCG 1 cut(s) 1137
MwoI GCNNNNNNNGC 1 cut(s) 1058
NcoI CCATGG 2 cut(s) 632, 1017
NdeI CATATG 1 cut(s) 975
NdeII GATC 5 cut(s) 355, 640, 926, 979, 1132
NheI GCTAGC 1 cut(s) 554
NlaIII CATG 7 cut(s) 182, 287, 482, 636, 821, 973, 1021
NlaIV GGNNCC 3 cut(s) 630, 915, 916
NmuCI GTSAC 2 cut(s) 253, 452
NsiI ATGCAT 1 cut(s) 975
NspI RCATGY 1 cut(s) 973
NspV TTCGAA 2 cut(s) 89, 129
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 4 cut(s) 233, 731, 791, 932
PkrI GCNGC 5 cut(s) 110, 340, 564, 1051, 1126
PleI GAGTC 4 cut(s) 769, 784, 814, 844
PpsI GAGTC 4 cut(s) 769, 784, 814, 844
PpuMI RGGWCCY 1 cut(s) 914
Psp5II RGGWCCY 1 cut(s) 914
PspN4I GGNNCC 3 cut(s) 630, 915, 916
PspOMI GGGCCC 1 cut(s) 628
PspPI GGNCC 5 cut(s) 106, 628, 629, 679, 914
PspPPI RGGWCCY 1 cut(s) 914
RsaI GTAC 6 cut(s) 281, 288, 381, 510, 583, 589
RsaNI GTAC 6 cut(s) 280, 287, 380, 509, 582, 588
RseI CAYNNNNRTG 1 cut(s) 974
SaqAI TTAA 4 cut(s) 75, 486, 1140, 1197
SatI GCNGC 5 cut(s) 109, 339, 563, 1050, 1125
Sau3AI GATC 5 cut(s) 355, 640, 926, 979, 1132
Sau96I GGNCC 5 cut(s) 106, 628, 629, 679, 914
SchI GAGTC 4 cut(s) 770, 785, 815, 845
SduI GDGCHC 2 cut(s) 365, 632
SfaNI GCATC 1 cut(s) 184
SfuI TTCGAA 2 cut(s) 89, 129
SinI GGWCC 2 cut(s) 679, 914
SmiMI CAYNNNNRTG 1 cut(s) 974
Sse9I AATT 8 cut(s) 84, 91, 131, 141, 317, 457, 546, 667
SsiI CCGC 2 cut(s) 109, 338
SspI AATATT 1 cut(s) 161
SspMI CTAG 4 cut(s) 555, 644, 705, 1214
StyI CCWWGG 4 cut(s) 632, 1017, 1062, 1146
TaaI ACNGT 5 cut(s) 119, 452, 683, 1008, 1077
TaiI ACGT 2 cut(s) 28, 308
TaqI TCGA 4 cut(s) 89, 129, 794, 925
TasI AATT 8 cut(s) 84, 91, 131, 141, 317, 457, 546, 667
TatI WGTACW 3 cut(s) 379, 508, 587
TauI GCSGC 2 cut(s) 111, 341
TfiI GAWTC 4 cut(s) 233, 731, 791, 932
Tru1I TTAA 4 cut(s) 75, 486, 1140, 1197
Tru9I TTAA 4 cut(s) 75, 486, 1140, 1197
TseFI GTSAC 2 cut(s) 253, 452
TseI GCWGC 3 cut(s) 562, 1049, 1124
Tsp45I GTSAC 2 cut(s) 253, 452
TspDTI ATGAA 6 cut(s) 162, 467, 668, 804, 923, 1200
VpaK11BI GGWCC 2 cut(s) 679, 914
XapI RAATTY 3 cut(s) 91, 131, 317
XbaI TCTAGA 1 cut(s) 643
XceI RCATGY 1 cut(s) 973
XmiI GTMKAC 1 cut(s) 1079
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 4 cut(s) 555, 644, 705, 1214
ZraI GACGTC 1 cut(s) 26
Zsp2I ATGCAT 1 cut(s) 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.