Rh6BG141100

Phosphatidylinositol phosphatidylcholine transfer protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
22494932 .. 22499299
4368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG141100.1

Sequence Viewer

Length: 1338 bp
ATGTCTGCACCTGATGCTGATGGACGTCCTGCTGAAAACTCTGAGGATGAGAAGAAAACAAAGCTTGGGTCTTTTAAGAAGGCAATTTCGAATTCCTTCAATAAGGGTCGCAGGAACAGTAAGGACTTCGAATTCAAGGAAATTGATGAAGTCTTGAAATATTATCCACAAGGGCATCATGGAGTTGATAAGGATGGACGCCCTGTCTATATTGAGAAACTTGGTCAAGTAGATTCTAACAAGCTGTTGCAAGTGACAACAATGGACAGATATGTGAAGTACCATGTACGGGAGTTTGAGAGGACATTTGTGCATAAATTCCCTGCCTGTTCCATTGCGGCGAAGAAGCACATTGATCAGAGCACTACCATTTTGGATGTACAAGGAGTGGGGCTGACAAGTTTGAACAAATCTGCAAGGGAACTCATCCAACGCCTTCAGAAAGTTGACGGTGACAATTATCCTGAGACCCTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTATGGAACACTGTCAAATCTTTTCTTGACCCGAAGACCACTGCAAAAATCAATGTACTGGGAAACCAATACCAAAGCAAGTTGCTTGAAATAATTGAAGCTAGCGAGCTGCCAGAGTTTTTGGGAGGTACTTGTACTTGTTCTGATAAGGGTGGCTGTATGCTTTCTGATAAGGGCCCATGGAATGATCTAGAAATAATGAAGATGGTTCAGAATTATGGCGAGGACCGTGAGGTTGACGCCAAATCCTCTAGCACAACTATATCCGGCAATGTGGATTCAAGCAATAAGGAGTTGGGCAAAAAGGAGTCAGGCAAAAAGGAGTCTGGCAAAAATGAATCGAGTAAAAATGAGTCGGGCAAACATGAGTTGGACAAGAAGGAGTCGGACAAGAAGGAGTCAGACAAGAAGGAGTTGGACAAGAAGGAGGAGAAGAAGGTCGCTGAAGAAGAAAAAATCTCTGAAGATATGAAGGGTCCCCCAAATCGATCTGATTCAGTCTGCTCAGAGGCTTTTTTGGAGGCTAATGACATGCATATGGATCATCTCTCTCCTGTGCCTGAAGAACTGTCAACTCCCATGGGAGGTGAAAAAGAGGAAAAGCTTAGAGCTGCTCTTACTGCCTTGGAACAACAACTGTCTACAACCAAGCAGGCTGAGGTTGAGAAAGAGCAAAAGCTGAAGGCTGCTCTTGATCGCGTTAATGCCTTGGAACAAGAGCTAACGGAAACCAAGAAGGCACTTGATGAAGCCCGTGTTAAACAAGAGGAGCTTCTAGCCTCTGTTGGGAAGGAAAAGAAGTTTAGCCTATTCTGTTGGTGA

Protein Analysis

445

Amino Acids

50.03

Weight (kDa)

5.84

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 53 - 215 4.8e-30 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 28
AccI GTMKAC 1 cut(s) 1157
AccII CGCG 1 cut(s) 1215
AciI CCGC 1 cut(s) 338
AclWI GGATC 1 cut(s) 1065
AcsI RAATTY 3 cut(s) 91, 131, 317
AcuI CTGAAG 5 cut(s) 422, 981, 999, 1098, 1217
AcyI GRCGYC 3 cut(s) 25, 199, 756
AfaI GTAC 6 cut(s) 281, 288, 381, 573, 646, 652
AfiI CCNNNNNNNGG 3 cut(s) 289, 1100, 1302
AgsI TTSAA 7 cut(s) 100, 136, 157, 406, 605, 614, 798
AhdI GACNNNNNGTC 1 cut(s) 203
AluBI AGCT 9 cut(s) 64, 244, 617, 625, 1120, 1127, 1195, 1237, 1288
AluI AGCT 9 cut(s) 64, 244, 617, 625, 1120, 1127, 1195, 1237, 1288
Alw21I GWGCWC 1 cut(s) 365
Alw26I GTCTC 1 cut(s) 461
AlwI GGATC 1 cut(s) 1065
AoxI GGCC 1 cut(s) 691
ApaI GGGCCC 1 cut(s) 695
ApeKI GCWGC 3 cut(s) 625, 1127, 1202
ApoI RAATTY 3 cut(s) 91, 131, 317
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
Asp700I GAANNNNTTC 1 cut(s) 95
AspS9I GGNCC 4 cut(s) 691, 692, 742, 992
AsuHPI GGTGA 2 cut(s) 464, 1115
AsuII TTCGAA 2 cut(s) 89, 129
AsuNHI GCTAGC 1 cut(s) 617
AvaII GGWCC 2 cut(s) 742, 992
BaeGI GKGCMC 1 cut(s) 695
BanII GRGCYC 1 cut(s) 695
BbsI GAAGAC 1 cut(s) 557
Bbv12I GWGCWC 1 cut(s) 365
BbvCI CCTCAGC 1 cut(s) 1173
BbvI GCAGC 3 cut(s) 612, 1114, 1189
BccI CCATC 3 cut(s) 14, 188, 715
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 461
BfaI CTAG 4 cut(s) 618, 707, 768, 1292
BisI GCNGC 4 cut(s) 339, 626, 1128, 1203
BlsI GCNGC 4 cut(s) 340, 627, 1129, 1204
Bme18I GGWCC 2 cut(s) 742, 992
BmeRI GACNNNNNGTC 1 cut(s) 203
BmgT120I GGNCC 4 cut(s) 691, 692, 742, 992
BmiI GGNNCC 3 cut(s) 693, 993, 994
BmrI ACTGGG 1 cut(s) 584
BmsI GCATC 2 cut(s) 4, 184
BmtI GCTAGC 1 cut(s) 621
BmuI ACTGGG 1 cut(s) 584
BpiI GAAGAC 1 cut(s) 557
Bpu10I CCTNAGC 1 cut(s) 1173
Bpu14I TTCGAA 2 cut(s) 89, 129
Bsa29I ATCGAT 1 cut(s) 1003
BsaHI GRCGYC 3 cut(s) 25, 199, 756
BsaI GGTCTC 1 cut(s) 461
BsaJI CCNNGG 4 cut(s) 695, 1095, 1140, 1224
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 1100, 1302
Bse1I ACTGG 1 cut(s) 579
Bse3DI GCAATG 2 cut(s) 333, 793
BseCI ATCGAT 1 cut(s) 1003
BseDI CCNNGG 4 cut(s) 695, 1095, 1140, 1224
BseGI GGATG 4 cut(s) 52, 199, 382, 426
BseLI CCNNNNNNNGG 3 cut(s) 289, 1100, 1302
BseMI GCAATG 2 cut(s) 333, 793
BseMII CTCAG 4 cut(s) 33, 456, 1035, 1164
BseNI ACTGG 1 cut(s) 579
BseRI GAGGAG 2 cut(s) 959, 1298
BseSI GKGCMC 1 cut(s) 695
BseXI GCAGC 3 cut(s) 612, 1114, 1189
Bsh1236I CGCG 1 cut(s) 1215
BshFI GGCC 1 cut(s) 693
BshVI ATCGAT 1 cut(s) 1003
BsiHKAI GWGCWC 1 cut(s) 365
BsiSI CCGG 1 cut(s) 783
BslFI GGGAC 1 cut(s) 978
BslI CCNNNNNNNGG 3 cut(s) 289, 1100, 1302
BsmAI GTCTC 1 cut(s) 461
BsmFI GGGAC 1 cut(s) 978
BsnI GGCC 1 cut(s) 693
Bso31I GGTCTC 1 cut(s) 461
Bsp119I TTCGAA 2 cut(s) 89, 129
Bsp120I GGGCCC 1 cut(s) 691
Bsp1286I GDGCHC 2 cut(s) 365, 695
Bsp1407I TGTACA 1 cut(s) 379
Bsp143I GATC 5 cut(s) 355, 703, 1004, 1057, 1210
Bsp19I CCATGG 2 cut(s) 695, 1095
BspACI CCGC 1 cut(s) 338
BspANI GGCC 1 cut(s) 693
BspCNI CTCAG 4 cut(s) 34, 457, 1034, 1165
BspDI ATCGAT 1 cut(s) 1003
BspFNI CGCG 1 cut(s) 1215
BspLI GGNNCC 3 cut(s) 693, 993, 994
BspOI GCTAGC 1 cut(s) 621
BspPI GGATC 1 cut(s) 1065
BspT104I TTCGAA 2 cut(s) 89, 129
BspTNI GGTCTC 1 cut(s) 461
BsrDI GCAATG 2 cut(s) 333, 793
BsrGI TGTACA 1 cut(s) 379
BsrI ACTGG 1 cut(s) 579
BssECI CCNNGG 4 cut(s) 695, 1095, 1140, 1224
BssMI GATC 5 cut(s) 355, 703, 1004, 1057, 1210
BssNI GRCGYC 3 cut(s) 25, 199, 756
BssT1I CCWWGG 4 cut(s) 695, 1095, 1140, 1224
Bst4CI ACNGT 7 cut(s) 119, 452, 479, 529, 746, 1086, 1155
BstACI GRCGYC 3 cut(s) 25, 199, 756
BstAPI GCANNNNNTGC 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 379
BstBI TTCGAA 2 cut(s) 89, 129
BstC8I GCNNGC 3 cut(s) 619, 623, 1170
BstDEI CTNAG 5 cut(s) 42, 465, 1021, 1121, 1173
BstDSI CCRYGG 2 cut(s) 695, 1095
BstF5I GGATG 4 cut(s) 52, 199, 382, 426
BstFNI CGCG 1 cut(s) 1215
BstKTI GATC 5 cut(s) 358, 706, 1007, 1060, 1213
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 5 cut(s) 355, 703, 1004, 1057, 1210
BstMWI GCNNNNNNNGC 2 cut(s) 14, 1136
BstNSI RCATGY 1 cut(s) 1051
BstSLI GKGCMC 1 cut(s) 695
BstUI CGCG 1 cut(s) 1215
BstV1I GCAGC 3 cut(s) 612, 1114, 1189
BstV2I GAAGAC 1 cut(s) 557
Bsu15I ATCGAT 1 cut(s) 1003
BsuRI GGCC 1 cut(s) 693
BsuTUI ATCGAT 1 cut(s) 1003
BtgI CCRYGG 2 cut(s) 695, 1095
BtsCI GGATG 4 cut(s) 52, 199, 382, 426
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 2 cut(s) 525, 555
Cac8I GCNNGC 3 cut(s) 619, 623, 1170
Cfr13I GGNCC 4 cut(s) 691, 692, 742, 992
ClaI ATCGAT 1 cut(s) 1003
CseI GACGC 2 cut(s) 207, 764
Csp6I GTAC 6 cut(s) 280, 287, 380, 572, 645, 651
CviAII CATG 6 cut(s) 179, 284, 696, 881, 1048, 1096
CviQI GTAC 6 cut(s) 280, 287, 380, 572, 645, 651
DdeI CTNAG 5 cut(s) 42, 465, 1021, 1121, 1173
DpnI GATC 5 cut(s) 357, 705, 1006, 1059, 1212
DpnII GATC 5 cut(s) 355, 703, 1004, 1057, 1210
DriI GACNNNNNGTC 1 cut(s) 203
Eam1105I GACNNNNNGTC 1 cut(s) 203
Eco130I CCWWGG 4 cut(s) 695, 1095, 1140, 1224
Eco24I GRGCYC 1 cut(s) 695
Eco31I GGTCTC 1 cut(s) 461
Eco47I GGWCC 2 cut(s) 742, 992
Eco57I CTGAAG 5 cut(s) 422, 981, 999, 1098, 1217
EcoO109I RGGNCCY 2 cut(s) 691, 992
EcoRI GAATTC 2 cut(s) 91, 131
EcoT14I CCWWGG 4 cut(s) 695, 1095, 1140, 1224
EcoT22I ATGCAT 1 cut(s) 1053
EcoT38I GRGCYC 1 cut(s) 695
ErhI CCWWGG 4 cut(s) 695, 1095, 1140, 1224
FaeI CATG 6 cut(s) 182, 287, 699, 884, 1051, 1099
FalI AAGNNNNNCTT 2 cut(s) 1272, 1304
FaqI GGGAC 1 cut(s) 978
FatI CATG 6 cut(s) 178, 283, 695, 880, 1047, 1095
FauNDI CATATG 1 cut(s) 1053
FbaI TGATCA 1 cut(s) 355
FblI GTMKAC 1 cut(s) 1157
Fnu4HI GCNGC 4 cut(s) 339, 626, 1128, 1203
FokI GGATG 4 cut(s) 59, 206, 389, 413
FriOI GRGCYC 1 cut(s) 695
Fsp4HI GCNGC 4 cut(s) 339, 626, 1128, 1203
FspBI CTAG 4 cut(s) 618, 707, 768, 1292
GluI GCNGC 4 cut(s) 339, 626, 1128, 1203
HaeIII GGCC 1 cut(s) 693
HapII CCGG 1 cut(s) 783
HgaI GACGC 2 cut(s) 207, 764
Hin1I GRCGYC 3 cut(s) 25, 199, 756
Hin1II CATG 6 cut(s) 182, 287, 699, 884, 1051, 1099
HincII GTYRAC 3 cut(s) 448, 754, 1089
HindII GTYRAC 3 cut(s) 448, 754, 1089
HindIII AAGCTT 2 cut(s) 62, 1118
HinfI GANTC 9 cut(s) 233, 794, 824, 839, 854, 869, 899, 914, 1010
HpaII CCGG 1 cut(s) 783
HphI GGTGA 2 cut(s) 464, 1115
Hpy166II GTNNAC 4 cut(s) 448, 754, 1089, 1158
Hpy188III TCNNGA 6 cut(s) 154, 464, 504, 542, 707, 1208
Hpy8I GTNNAC 4 cut(s) 448, 754, 1089, 1158
HpyCH4III ACNGT 7 cut(s) 119, 452, 479, 529, 746, 1086, 1155
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 6 cut(s) 8, 250, 313, 416, 560, 1051
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 1136
HpyF3I CTNAG 5 cut(s) 42, 465, 1021, 1121, 1173
HpySE526I ACGT 1 cut(s) 25
Hsp92I GRCGYC 3 cut(s) 25, 199, 756
Hsp92II CATG 6 cut(s) 182, 287, 699, 884, 1051, 1099
KflI GGGWCCC 1 cut(s) 992
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 5 cut(s) 355, 703, 1004, 1057, 1210
LmnI GCTCC 1 cut(s) 1285
Lsp1109I GCAGC 3 cut(s) 612, 1114, 1189
LweI GCATC 2 cut(s) 4, 184
MaeI CTAG 4 cut(s) 618, 707, 768, 1292
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 2 cut(s) 253, 452
MalI GATC 5 cut(s) 357, 705, 1006, 1059, 1212
MboI GATC 5 cut(s) 355, 703, 1004, 1057, 1210
MboII GAAGA 9 cut(s) 64, 355, 562, 730, 961, 974, 977, 992, 1091
MhlI GDGCHC 2 cut(s) 365, 695
MluCI AATT 8 cut(s) 84, 91, 131, 141, 317, 457, 609, 730
MlyI GAGTC 5 cut(s) 833, 848, 878, 908, 923
MmeI TCCRAC 4 cut(s) 454, 867, 882, 912
Mph1103I ATGCAT 1 cut(s) 1053
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 3 cut(s) 75, 1218, 1275
MslI CAYNNNNRTG 1 cut(s) 1052
MspI CCGG 1 cut(s) 783
MvnI CGCG 1 cut(s) 1215
MwoI GCNNNNNNNGC 2 cut(s) 14, 1136
NcoI CCATGG 2 cut(s) 695, 1095
NdeI CATATG 1 cut(s) 1053
NdeII GATC 5 cut(s) 355, 703, 1004, 1057, 1210
NheI GCTAGC 1 cut(s) 617
NlaIII CATG 6 cut(s) 182, 287, 699, 884, 1051, 1099
NlaIV GGNNCC 3 cut(s) 693, 993, 994
NmuCI GTSAC 2 cut(s) 253, 452
NsiI ATGCAT 1 cut(s) 1053
NspI RCATGY 1 cut(s) 1051
NspV TTCGAA 2 cut(s) 89, 129
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 4 cut(s) 233, 794, 854, 1010
PkrI GCNGC 4 cut(s) 340, 627, 1129, 1204
PleI GAGTC 5 cut(s) 832, 847, 877, 907, 922
PpsI GAGTC 5 cut(s) 832, 847, 877, 907, 922
PpuMI RGGWCCY 1 cut(s) 992
Psp5II RGGWCCY 1 cut(s) 992
PspN4I GGNNCC 3 cut(s) 693, 993, 994
PspOMI GGGCCC 1 cut(s) 691
PspPI GGNCC 4 cut(s) 691, 692, 742, 992
PspPPI RGGWCCY 1 cut(s) 992
RsaI GTAC 6 cut(s) 281, 288, 381, 573, 646, 652
RsaNI GTAC 6 cut(s) 280, 287, 380, 572, 645, 651
RseI CAYNNNNRTG 1 cut(s) 1052
SaqAI TTAA 3 cut(s) 75, 1218, 1275
SatI GCNGC 4 cut(s) 339, 626, 1128, 1203
Sau3AI GATC 5 cut(s) 355, 703, 1004, 1057, 1210
Sau96I GGNCC 4 cut(s) 691, 692, 742, 992
SchI GAGTC 5 cut(s) 833, 848, 878, 908, 923
SduI GDGCHC 2 cut(s) 365, 695
SfaNI GCATC 2 cut(s) 4, 184
SfuI TTCGAA 2 cut(s) 89, 129
SinI GGWCC 2 cut(s) 742, 992
SmiMI CAYNNNNRTG 1 cut(s) 1052
Sse9I AATT 8 cut(s) 84, 91, 131, 141, 317, 457, 609, 730
SsiI CCGC 1 cut(s) 338
SspI AATATT 1 cut(s) 161
SspMI CTAG 4 cut(s) 618, 707, 768, 1292
StyI CCWWGG 4 cut(s) 695, 1095, 1140, 1224
TaaI ACNGT 7 cut(s) 119, 452, 479, 529, 746, 1086, 1155
TaiI ACGT 1 cut(s) 28
TaqI TCGA 4 cut(s) 89, 129, 857, 1003
TasI AATT 8 cut(s) 84, 91, 131, 141, 317, 457, 609, 730
TatI WGTACW 3 cut(s) 379, 571, 650
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 4 cut(s) 233, 794, 854, 1010
Tru1I TTAA 3 cut(s) 75, 1218, 1275
Tru9I TTAA 3 cut(s) 75, 1218, 1275
TscAI CASTG 2 cut(s) 532, 562
TseFI GTSAC 2 cut(s) 253, 452
TseI GCWGC 3 cut(s) 625, 1127, 1202
Tsp45I GTSAC 2 cut(s) 253, 452
TspDTI ATGAA 6 cut(s) 162, 475, 731, 867, 1001, 1278
TspGWI ACGGA 1 cut(s) 1256
TspRI CASTG 2 cut(s) 532, 562
VpaK11BI GGWCC 2 cut(s) 742, 992
XapI RAATTY 3 cut(s) 91, 131, 317
XbaI TCTAGA 1 cut(s) 706
XceI RCATGY 1 cut(s) 1051
XmiI GTMKAC 1 cut(s) 1157
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 4 cut(s) 618, 707, 768, 1292
ZraI GACGTC 1 cut(s) 26
Zsp2I ATGCAT 1 cut(s) 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.