FvH4_2g09490

Phosphatidylinositol phosphatidylcholine transfer protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
8415571 .. 8420484
4914 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g09490.t2

Sequence Viewer

Length: 1758 bp
ATGTGTGACACTATGTCTGGACCTCTTGACCGACACCTTAAACCTGTCCCTGAAGAAACTTCTGAGGAGGAAAGGAAAACAAGGCTTGGTGCTCTTAAGCAGAAGGCAATCAATGCCTCCACCAAGTTTAGGCATTCCTTTACAAAGAAGGGTCGAAGGAACAGTAAGGTAATGTCTGTCCCTATTGAGGACAACATTAATGCGGAGGAGTTACAGGCAGTGGACGCATTCCGCCAAGCACTTATCTTGGAAGAACTACTACCCTCAAAACATGATGATCATCATATGATGCTAAGATTTTTAAGGGCCAGAAAATTTGATATTGAGAAAGCAAAGCAAATGTGGACTGATATGCTTCAGTGGAGGAAGGAATTTGGTGCCGACACTATTATGGAGGAATTTGAATACAAGGAAATTGATGAGGTTTTGAACTACTATCCCCAAGGCCATCATGGAGTTGACAAGGATGGAAGACCTGTCTACATTGAGAGACTTGGTCAAGTGGATTCAACCAAAATGATGCAAGTCACAACAATGGACCGTTATGTGAAATTCCATGTAAGGGAGTTTGAGAGGACCTTCGCCCATAAATTCCCTGCGTGTTCCATTGCAGCAAAGAAGCACATTGATCAGAGCACCACTATTCTTGATGTACAAGGAGTGGGCCTTAAAAATTTCAACAAATCAGCGAGAGAACTTATTCAGTGCCTTCAGAAGATTGATGGCGACAATTATCCTGAGACCCTCAACCGTATGTTCATCATTAATGCTGGTTCTGGATTTAGGCTTTTGTGGAGCACTGTCAAATCTTTCCTTGATCCCAAGACCACTGCAAAAATCAATGTTCTTGGAAACAAATACCAGAGCAAGTTGCTTGAAATAATTGATGCTAGTGAGCTGCCAGAGTTTTTGGGTGGCACTTGTACTTGTGCAGATAAGGGTGGTTGCATGCGTTCTGATAAAGGGCCATGGAATGACCCAGATATAATGAAGATGGTTCACAATGGTGAGGGCAAATGCACAAGACAAACTTTATCAGGCATTGAGGAGAAGATAATCTCCGAAGATGAAATGTCATACTCAAAGAGATGTGATTCTTTCAACTCAAAAACAGTTCAAATGGAACATACGAAACTCTCTCATGTTCCTAAACAAGTTTCATTCACCAAAAAATCCAGTAAGGACTATGAGTATGACAATTTGATGCCAATGGTTGACAAGATCGTGGATGCTACATGGACTAAATCAGCTCACTATGATAAATTTGCTCACAGTCAAGATTGCTTCCCCTCGCATAATGTGGGCAAATCTTCTGAAGGATTGAGCAATTACTTGCTTTCTGGAATCATGGCATTCATCATGGGAATTGTCACCATGATCCGATTGACACGAAACATGCCAAGGAAGCTCACCGAGGCTGCCCTCTATGGAAGCCCTGCTTATTGCAATGGAATGGGGATGAAGGCCAAACAGTTGCCTGCACCATCCATCTCCAGTGACACATATATGAACATGATGAAGCGCATGGCTGAGTTGGAGGAGAAAGTGAAAGTTCTCAGCAAAAAACCAACTGTCATGCCACCTGAGAAAGAGGAGATGTTGAACAATGCTCTCAACCGAGCCGCAGCCCTGGAACAAGAACTCTCATCAACCAAGAAGGCACTTGATGACGCCCTGGTCCGACAGAATGAGCTTATAGCCTACCTTGATAAGAAGAAAAAGAAGAAGAAATTTAAAATGAACCCATTTAAATGGTAA

Protein Analysis

586

Amino Acids

66.98

Weight (kDa)

8.99

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_N PF03765 90 - 117 3e-08 CRAL/TRIO, N-terminal domain
CRAL_TRIO PF00650 144 - 306 3.5e-31 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1676
AccB1I GGYRCC 1 cut(s) 377
AccI GTMKAC 1 cut(s) 480
AciI CCGC 3 cut(s) 203, 232, 1623
AclWI GGATC 2 cut(s) 812, 1372
AcsI RAATTY 8 cut(s) 314, 371, 398, 551, 590, 673, 1262, 1730
AcuI CTGAAG 4 cut(s) 72, 341, 695, 1335
AcyI GRCGYC 1 cut(s) 1671
AfaI GTAC 2 cut(s) 654, 925
AfiI CCNNNNNNNGG 3 cut(s) 129, 187, 562
AflII CTTAAG 1 cut(s) 95
AgsI TTSAA 8 cut(s) 404, 430, 510, 679, 878, 1102, 1118, 1603
AhdI GACNNNNNGTC 1 cut(s) 13
AjnI CCWGG 2 cut(s) 1629, 1674
AleI CACNNNNGTG 1 cut(s) 1005
AluBI AGCT 4 cut(s) 898, 1250, 1408, 1693
AluI AGCT 4 cut(s) 898, 1250, 1408, 1693
Alw21I GWGCWC 3 cut(s) 94, 638, 800
Alw26I GTCTC 2 cut(s) 484, 734
AlwI GGATC 2 cut(s) 812, 1372
AoxI GGCC 5 cut(s) 306, 445, 664, 965, 1464
ApeKI GCWGC 4 cut(s) 611, 898, 1418, 1625
ApoI RAATTY 8 cut(s) 314, 371, 398, 551, 590, 673, 1262, 1730
AseI ATTAAT 2 cut(s) 198, 765
Asp700I GAANNNNTTC 1 cut(s) 699
AspLEI GCGC 1 cut(s) 1524
AspS9I GGNCC 7 cut(s) 20, 306, 538, 576, 664, 965, 1678
AsuHPI GGTGA 4 cut(s) 1019, 1156, 1363, 1402
AvaII GGWCC 4 cut(s) 20, 538, 576, 1678
BanI GGYRCC 1 cut(s) 377
BarI GAAGNNNNNNTAC 2 cut(s) 243, 275
BbsI GAAGAC 1 cut(s) 478
Bbv12I GWGCWC 3 cut(s) 94, 638, 800
BbvI GCAGC 4 cut(s) 623, 885, 1405, 1637
BccI CCATC 6 cut(s) 456, 461, 716, 988, 1492, 1496
BciT130I CCWGG 2 cut(s) 1631, 1676
BclI TGATCA 2 cut(s) 277, 628
BcoDI GTCTC 2 cut(s) 484, 734
BfaI CTAG 1 cut(s) 891
BfrI CTTAAG 1 cut(s) 95
BisI GCNGC 5 cut(s) 612, 899, 1419, 1623, 1626
BlsI GCNGC 5 cut(s) 613, 900, 1420, 1624, 1627
Bme1390I CCNGG 2 cut(s) 1631, 1676
Bme18I GGWCC 4 cut(s) 20, 538, 576, 1678
BmeRI GACNNNNNGTC 1 cut(s) 13
BmgT120I GGNCC 7 cut(s) 20, 306, 538, 576, 664, 965, 1678
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 2 cut(s) 1631, 1676
BmsI GCATC 5 cut(s) 279, 510, 877, 1194, 1219
BpiI GAAGAC 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 1477
BsaBI GATNNNNATC 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 1671
BsaI GGTCTC 1 cut(s) 734
BsaJI CCNNGG 6 cut(s) 442, 968, 1400, 1413, 1629, 1674
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 187, 562
Bse1I ACTGG 2 cut(s) 1176, 1494
Bse3DI GCAATG 2 cut(s) 606, 1453
Bse8I GATNNNNATC 1 cut(s) 279
BseBI CCWGG 2 cut(s) 1631, 1676
BseDI CCNNGG 6 cut(s) 442, 968, 1400, 1413, 1629, 1674
BseGI GGATG 4 cut(s) 472, 1234, 1464, 1484
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 3 cut(s) 129, 187, 562
BseMI GCAATG 2 cut(s) 606, 1453
BseMII CTCAG 5 cut(s) 54, 729, 1521, 1570, 1575
BseNI ACTGG 2 cut(s) 1176, 1494
BseRI GAGGAG 5 cut(s) 80, 221, 1061, 1553, 1607
BseXI GCAGC 4 cut(s) 623, 885, 1405, 1637
BsgI GTGCAG 2 cut(s) 951, 1464
BshFI GGCC 5 cut(s) 308, 447, 666, 967, 1466
BshNI GGYRCC 1 cut(s) 377
BsiHKAI GWGCWC 3 cut(s) 94, 638, 800
BslFI GGGAC 2 cut(s) 32, 164
BslI CCNNNNNNNGG 3 cut(s) 129, 187, 562
BsmAI GTCTC 2 cut(s) 484, 734
BsmFI GGGAC 2 cut(s) 32, 164
BsmI GAATGC 3 cut(s) 133, 227, 1352
BsnI GGCC 5 cut(s) 308, 447, 666, 967, 1466
Bso31I GGTCTC 1 cut(s) 734
Bsp1286I GDGCHC 3 cut(s) 94, 638, 800
Bsp1407I TGTACA 1 cut(s) 652
Bsp143I GATC 5 cut(s) 277, 628, 817, 1221, 1377
Bsp19I CCATGG 1 cut(s) 968
BspACI CCGC 3 cut(s) 203, 232, 1623
BspANI GGCC 5 cut(s) 308, 447, 666, 967, 1466
BspCNI CTCAG 5 cut(s) 55, 730, 1522, 1569, 1576
BspLI GGNNCC 1 cut(s) 379
BspPI GGATC 2 cut(s) 812, 1372
BspT107I GGYRCC 1 cut(s) 377
BspTI CTTAAG 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 734
BsrDI GCAATG 2 cut(s) 606, 1453
BsrGI TGTACA 1 cut(s) 652
BsrI ACTGG 2 cut(s) 1176, 1494
BssECI CCNNGG 6 cut(s) 442, 968, 1400, 1413, 1629, 1674
BssMI GATC 5 cut(s) 277, 628, 817, 1221, 1377
BssNI GRCGYC 1 cut(s) 1671
BssT1I CCWWGG 3 cut(s) 442, 968, 1400
Bst2UI CCWGG 2 cut(s) 1631, 1676
Bst4CI ACNGT 8 cut(s) 164, 542, 752, 802, 1114, 1274, 1473, 1573
BstACI GRCGYC 1 cut(s) 1671
BstAFI CTTAAG 1 cut(s) 95
BstAPI GCANNNNNTGC 1 cut(s) 113
BstAUI TGTACA 1 cut(s) 652
BstC8I GCNNGC 2 cut(s) 950, 1479
BstDEI CTNAG 6 cut(s) 63, 293, 738, 1530, 1556, 1584
BstDSI CCRYGG 1 cut(s) 968
BstF5I GGATG 4 cut(s) 472, 1234, 1464, 1484
BstHHI GCGC 1 cut(s) 1524
BstKTI GATC 5 cut(s) 280, 631, 820, 1224, 1380
BstMAI GTCTC 2 cut(s) 484, 734
BstMBI GATC 5 cut(s) 277, 628, 817, 1221, 1377
BstMWI GCNNNNNNNGC 3 cut(s) 113, 224, 1405
BstNI CCWGG 2 cut(s) 1631, 1676
BstNSI RCATGY 2 cut(s) 952, 1399
BstSCI CCNGG 2 cut(s) 1629, 1674
BstV1I GCAGC 4 cut(s) 623, 885, 1405, 1637
BstV2I GAAGAC 1 cut(s) 478
BstXI CCANNNNNNTGG 1 cut(s) 1752
BsuRI GGCC 5 cut(s) 308, 447, 666, 967, 1466
BtgI CCRYGG 1 cut(s) 968
BtsCI GGATG 4 cut(s) 472, 1234, 1464, 1484
BtsI GCAGTG 2 cut(s) 225, 828
BtsIMutI CAGTG 6 cut(s) 225, 365, 710, 798, 828, 1501
Cac8I GCNNGC 2 cut(s) 950, 1479
CfoI GCGC 1 cut(s) 1524
Cfr13I GGNCC 7 cut(s) 20, 306, 538, 576, 664, 965, 1678
CseI GACGC 2 cut(s) 233, 1679
Csp6I GTAC 2 cut(s) 653, 924
CspCI CAANNNNNGTGG 2 cut(s) 628, 663
CviQI GTAC 2 cut(s) 653, 924
DdeI CTNAG 6 cut(s) 63, 293, 738, 1530, 1556, 1584
DpnI GATC 5 cut(s) 279, 630, 819, 1223, 1379
DpnII GATC 5 cut(s) 277, 628, 817, 1221, 1377
DraI TTTAAA 2 cut(s) 1735, 1750
DrdI GACNNNNNNGTC 1 cut(s) 1676
DriI GACNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 1676
Eam1105I GACNNNNNGTC 1 cut(s) 13
EciI GGCGGA 1 cut(s) 221
Eco130I CCWWGG 3 cut(s) 442, 968, 1400
Eco31I GGTCTC 1 cut(s) 734
Eco47I GGWCC 4 cut(s) 20, 538, 576, 1678
Eco57I CTGAAG 4 cut(s) 72, 341, 695, 1335
EcoO109I RGGNCCY 1 cut(s) 576
EcoRII CCWGG 2 cut(s) 1629, 1674
EcoT14I CCWWGG 3 cut(s) 442, 968, 1400
ErhI CCWWGG 3 cut(s) 442, 968, 1400
FalI AAGNNNNNCTT 4 cut(s) 1015, 1047, 1423, 1455
FaqI GGGAC 2 cut(s) 32, 164
FauNDI CATATG 1 cut(s) 285
FbaI TGATCA 2 cut(s) 277, 628
FblI GTMKAC 1 cut(s) 480
Fnu4HI GCNGC 5 cut(s) 612, 899, 1419, 1623, 1626
FokI GGATG 4 cut(s) 479, 1241, 1471, 1471
Fsp4HI GCNGC 5 cut(s) 612, 899, 1419, 1623, 1626
FspBI CTAG 1 cut(s) 891
GlaI GCGC 1 cut(s) 1523
GluI GCNGC 5 cut(s) 612, 899, 1419, 1623, 1626
GsuI CTGGAG 1 cut(s) 1477
HaeIII GGCC 5 cut(s) 308, 447, 666, 967, 1466
HgaI GACGC 2 cut(s) 233, 1679
HhaI GCGC 1 cut(s) 1524
Hin1I GRCGYC 1 cut(s) 1671
Hin6I GCGC 1 cut(s) 1522
HinP1I GCGC 1 cut(s) 1522
HincII GTYRAC 2 cut(s) 460, 1216
HindII GTYRAC 2 cut(s) 460, 1216
HinfI GANTC 3 cut(s) 506, 1094, 1344
HphI GGTGA 4 cut(s) 1019, 1156, 1363, 1402
Hpy166II GTNNAC 6 cut(s) 223, 345, 460, 481, 1000, 1216
Hpy188I TCNGA 8 cut(s) 64, 633, 714, 958, 1063, 1315, 1382, 1682
Hpy188III TCNNGA 7 cut(s) 18, 26, 647, 737, 777, 1277, 1341
Hpy8I GTNNAC 6 cut(s) 223, 345, 460, 481, 1000, 1216
HpyAV CCTTC 9 cut(s) 97, 142, 150, 361, 589, 719, 1310, 1456, 1651
HpyCH4III ACNGT 8 cut(s) 164, 542, 752, 802, 1114, 1274, 1473, 1573
HpyCH4V TGCA 8 cut(s) 523, 611, 833, 932, 948, 1020, 1446, 1481
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 224, 1405
HpyF3I CTNAG 6 cut(s) 63, 293, 738, 1530, 1556, 1584
Hsp92I GRCGYC 1 cut(s) 1671
HspAI GCGC 1 cut(s) 1522
Ksp22I TGATCA 2 cut(s) 277, 628
Kzo9I GATC 5 cut(s) 277, 628, 817, 1221, 1377
LmnI GCTCC 1 cut(s) 795
Lsp1109I GCAGC 4 cut(s) 623, 885, 1405, 1637
LweI GCATC 5 cut(s) 279, 510, 877, 1194, 1219
MaeI CTAG 1 cut(s) 891
MaeIII GTNAC 5 cut(s) 5, 210, 526, 1369, 1496
MalI GATC 5 cut(s) 279, 630, 819, 1223, 1379
MboI GATC 5 cut(s) 277, 628, 817, 1221, 1377
MhlI GDGCHC 3 cut(s) 94, 638, 800
MmeI TCCRAC 2 cut(s) 1515, 1705
MroXI GAANNNNTTC 1 cut(s) 699
MseI TTAA 8 cut(s) 39, 96, 198, 302, 669, 765, 1734, 1749
MslI CAYNNNNRTG 5 cut(s) 389, 533, 1005, 1505, 1750
MspCI CTTAAG 1 cut(s) 95
MspR9I CCNGG 2 cut(s) 1631, 1676
Mva1269I GAATGC 3 cut(s) 133, 227, 1352
MvaI CCWGG 2 cut(s) 1631, 1676
MwoI GCNNNNNNNGC 3 cut(s) 113, 224, 1405
NcoI CCATGG 1 cut(s) 968
NdeI CATATG 1 cut(s) 285
NdeII GATC 5 cut(s) 277, 628, 817, 1221, 1377
NlaIV GGNNCC 1 cut(s) 379
NmuCI GTSAC 4 cut(s) 5, 526, 1369, 1496
NspI RCATGY 2 cut(s) 952, 1399
OliI CACNNNNGTG 1 cut(s) 1005
PaeI GCATGC 1 cut(s) 952
PctI GAATGC 3 cut(s) 133, 227, 1352
PdmI GAANNNNTTC 1 cut(s) 699
PfeI GAWTC 3 cut(s) 506, 1094, 1344
PflFI GACNNNGTC 1 cut(s) 495
PkrI GCNGC 5 cut(s) 613, 900, 1420, 1624, 1627
PpuMI RGGWCCY 1 cut(s) 576
PshBI ATTAAT 2 cut(s) 198, 765
Psp5II RGGWCCY 1 cut(s) 576
Psp6I CCWGG 2 cut(s) 1629, 1674
PspGI CCWGG 2 cut(s) 1629, 1674
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 7 cut(s) 20, 306, 538, 576, 664, 965, 1678
PspPPI RGGWCCY 1 cut(s) 576
PsyI GACNNNGTC 1 cut(s) 495
RsaI GTAC 2 cut(s) 654, 925
RsaNI GTAC 2 cut(s) 653, 924
RseI CAYNNNNRTG 5 cut(s) 389, 533, 1005, 1505, 1750
SaqAI TTAA 8 cut(s) 39, 96, 198, 302, 669, 765, 1734, 1749
SatI GCNGC 5 cut(s) 612, 899, 1419, 1623, 1626
Sau3AI GATC 5 cut(s) 277, 628, 817, 1221, 1377
Sau96I GGNCC 7 cut(s) 20, 306, 538, 576, 664, 965, 1678
ScrFI CCNGG 2 cut(s) 1631, 1676
SduI GDGCHC 3 cut(s) 94, 638, 800
SfaNI GCATC 5 cut(s) 279, 510, 877, 1194, 1219
SinI GGWCC 4 cut(s) 20, 538, 576, 1678
SmiI ATTTAAAT 1 cut(s) 1750
SmiMI CAYNNNNRTG 5 cut(s) 389, 533, 1005, 1505, 1750
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SphI GCATGC 1 cut(s) 952
SsiI CCGC 3 cut(s) 203, 232, 1623
SspMI CTAG 1 cut(s) 891
StyD4I CCNGG 2 cut(s) 1629, 1674
StyI CCWWGG 3 cut(s) 442, 968, 1400
SwaI ATTTAAAT 1 cut(s) 1750
TaaI ACNGT 8 cut(s) 164, 542, 752, 802, 1114, 1274, 1473, 1573
TaqI TCGA 1 cut(s) 154
TaqII GACCGA 1 cut(s) 45
TatI WGTACW 2 cut(s) 652, 923
TauI GCSGC 1 cut(s) 1625
TfiI GAWTC 3 cut(s) 506, 1094, 1344
Tru1I TTAA 8 cut(s) 39, 96, 198, 302, 669, 765, 1734, 1749
Tru9I TTAA 8 cut(s) 39, 96, 198, 302, 669, 765, 1734, 1749
TscAI CASTG 6 cut(s) 225, 365, 710, 805, 835, 1501
TseFI GTSAC 4 cut(s) 5, 526, 1369, 1496
TseI GCWGC 4 cut(s) 611, 898, 1418, 1625
Tsp45I GTSAC 4 cut(s) 5, 526, 1369, 1496
TspDTI ATGAA 9 cut(s) 748, 1004, 1083, 1149, 1345, 1475, 1523, 1532, 1754
TspRI CASTG 6 cut(s) 225, 365, 710, 805, 835, 1501
Tth111I GACNNNGTC 1 cut(s) 495
Vha464I CTTAAG 1 cut(s) 95
VpaK11BI GGWCC 4 cut(s) 20, 538, 576, 1678
VspI ATTAAT 2 cut(s) 198, 765
XapI RAATTY 8 cut(s) 314, 371, 398, 551, 590, 673, 1262, 1730
XceI RCATGY 2 cut(s) 952, 1399
XcmI CCANNNNNNNNNTGG 1 cut(s) 449
XmiI GTMKAC 1 cut(s) 480
XmnI GAANNNNTTC 1 cut(s) 699
XspI CTAG 1 cut(s) 891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.