Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001414

Physical Location & Seq

Genomic Coordinates Forward (+)

2470081 .. 2474623

Gene Structure 4543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0019000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3708 bp

ATGGAAAATGGTGATGGGATTTTAGGTGGGTCTCAGACGGTGGGTGAGAATAAGGCTGAGGTTGTTGAGGAGAGGGTTGTAGAGGATTCTAATGGAGTCAAGGATGATGTGGAGGAAGAGGTTTTCGAGGAGGCGATAGAGACCGGGACTGTTGGCGACAGTCCTCGTGCGGAGGATTTTGAAGAGGCGATTGAGGTTCTGGATGAGGCTGAGAAGAGCAAGGAGGAGGAGGCTGTGGAGAACGGTGGGGAGGAAGTAGAAAAAATGGCGGGTGGGGATAGTGTTGATGGGGTTGCGGGGACTGGTAGTGTTGTTGTGGAAGAGACCGTGAAGGAATCAGAGACTGGTGATTTGAAGGGGGTAGTGGCAGATGAAGAGTTGGTGGGTAGCCTAGAAGATGCGGTAAAAGATGTCTCGGAGGTTGGTGCTGATGGACAAGTAGCAGTTTCGACAGGTGGGGATGAGGCTGACCATGTGAAGTGTGAGAAGCACGATTCTAAATCAAATGGATTGACGAATGATGGGTTGTTGGATGCAGCAAATGAGGTTTCAGGGATCGGTGCGGGTGGAGAAATACCAATTTTGACTGATGTGGACAAGGTTGATGGGAAGCCTGTTGAGGTTGCTGAGAATGGGAAGTCTGAGAAGGTCGACCAGGATAACTTAGTTTTGGAAGTAGTGGCCACAGATGAAAAATTGGAGAACGAGGGTGCTAATCTTGATTCTGCTCCAGTAACTGAATCTAATATGGAAAATTTGAAGGAAGCTGGAAATGTTGAGGAAATAAAGGAGAATATCTTGAGTACAGATAATCTGGATGATAAGACTGTGGATGTGGTAGATACTTCTGTTGGTGTCACTTTGAAGCTTGAAGATGATAAGGGTGTGGAATTGCAAGAGAGAAATATGGATCCAGAGCATACAGAATGTGAGAGTACTGACTCAAATAATGCTATATTTGTCACTGAAGCAAGGCAAGTGGATAATAAAGTTGAAGAACTGAGAGCTACTATGACTTGTACAGATGCAGGAGACCAAGATTCAATGAAAGTGAAAAGTGTTTCTTCTGGGCTTGGTTTGGAGCATGATGTGGAAACATCTGAACTTAGAGGCATTTCATCTGAACAACAGTTGTCAGGGGTAGAAAGTCCTGTAGCATCTGAAATGGCAGGCTCAGCTGTTTCTAAAAGTTCTGCACCTGAGGACACAGAGAAGATTCAGGTTGGTAGCACTGTTTCGAGATCAGAGAATATCAAAGATGATGAACCTCAGCCAGCTGATGAGGTTGCTCATGTAGTTTGCAACAATGGTGCTGCGCCTGAGGAGCCTGAAAAGAAAGAAAACAATCATGTAGAGAAGAGTAGCAACAGAATGAATAGAGTGCAGGAGGTCCAGCATGCACCAGCTCATGGTACCTCTGGAAATTCTACAAATCCAACTCCCCTTCCCGCTCGTCCAGCTGGCCTTGGGCGTGCCGCCCCCCTTTTGGAACATGCACCTAGGGCGGTACAGCAGCCTCGGGTAAATGGTACCGTATCTCATGTGCAAAACCAGCAAATTGAGGATCCCATTAATGGAGAGGCGGAGGAGTCGGATGAGACTCGTGAAAAGCTTCAGATGATCAGAGTAAAATTTTTGCGGCTTTCGCATAGGCTTGGGCAGACTCCACATAATGTTGTTGTGGCTCAGGTCTTGTACAGACTGGGGTTAGCTGAGCAGCTGCATGGGAGAAGTGGGGGTCGTGTTGGTGCCTTTAGTTTCGACCGTGCAAGTGCTATGGCGGAGCAGCTAGAGGCATCTGGGAATGAACCCCTTGATTTCTCTTGTACAATTATGGTTCTTGGAAAGTCAGGAGTTGGTAAAAGTGCCACCATCAATTCTATATTTGATGAAGTGAAGTTCAATACTGATGCTTTTCAGATGGGGACAAAGAAGGTTCAGGATGTCGTGGGTACTGTGCAGGGGATTAAGGTACGAGTCATTGACACACCTGGGCTTCTACCTTCCTGGTCGGACCAGCGTCAGAATGAGAAGATTCTGCTCGCTGCTAAGCGCTTTATCAAGAAAACACCTCCAGATATTGTTTTGTATCTTGATAGGTTGGACATGCAGAGCAGGGATTTCAGTGACATGCCACTCTTGCGCACAATCACAGAGATTTTTGGGGCGACTATATGGTTCAATGCAATTGTGGTTCTGACTCATGCTGCGTCAGCTCCGCCCGAGGGCCCAAATGGCGCTGCTTCTAGTTATGACATGTTCGTCACTCAACGATCTCATGTTGTCCAGCAAGCCATTCGTCAGGCGGCTGGGGATATGCGCCTTATGAATCCTGTTTCCTTAGTAGAGAACCACTCTGCTTGCAGGACCAATCGGGCTGGCCAGAGAGTCTTGCCAAATGGTCAGGTTTGGAAGCCTCATTTGTTATTGCTCTCTTTTGCATCCAAAATCCTTGCTGAAGCTAATGCACTATTGAAGTTGCAAGACAGTCCTCCTGGAAGACCTTTTGCACCTCGATCTAGGCCACCTCCATTACCTTTCCTTCTTTCCTCCCTCCTTCAGTCAAAACCGCAGTTGAAGCTGCCTGAGGATCAATTTGGTGATGATGATGATGGCGTAGATGATGATCTGGATGAGTCTTCAGATTCTGAAGATGAATCAGAATTTGATGAATTACCACCATTCAAACGTTTGACTAAGGCCCAGGTGGAGAAACTCTCTAAAGCTCAGAAAAAGGCATATTTCGATGAGTTGGAGTATAGAGAAAAGCTTTTTATGAAGAAACAGTTGAAGGAGGAGAAAAAGCGACGAAAGTTGATGAAAAAAATGGCAGCTGCAGCAAAGGATCTGCCAAGTGATTATGGTGAAACTGTAGAGGAAGAAAGTGCAAGTGCAGCATCTGTACCAGTTCCCATGCCAGATTTGCCCTTGCCTGCTTCCTTTGATTCTGATAATCCCACTCATCGTTATCGATATCTAGATTCTTCCAACCAGTGGCTTGTAAGACCTGTTCTAGAAACTCATGGTTGGGATCATGACGTTGGTTATGAGGGCATAAATGCAGAAAGATTGTTTGTCTTAAATGGCAAAATACCCTTATCATTTTCTGGCCAGGTCACCAAAGATAAGAAGGATGCCAACGTCCAAATGGAACTAGCTAGTTCAGTAAAGCATGGGGAAGGGAAGGCAAGTTCGGTAGGACTTGAAATGCAGACTGTTGGAAAGGACTTGGCTTATACTCTACGAGGCGACACTAGGTTCAGTAATTTTAGGACGAATAAAGCAAGTGCTGGTGTCTCGGTCACCCTCTTAGGTGATGCTCTATCAGCTGGGTTGAAAATTGAAGACAAATTTATTCCTCATAAACGGTTCCGGTTGGTTATGACGGGTGGTGCAATGACTGCTCGTGGGGACATTGCTTATGGTGGTAGTTTGGAGGCTCAGTTAAGAGATAAAGATCATCCGCTGGGTCGTTCACTATCAACTTTTGGGCTCTCTGTGATGGATTGGCATGGAGATCTTGCTATTGGAGGTAATATACAGACTCAGATTCCAGTTGGTCGACATACAAACCTTATAGGTCGTGCCAATTTAAATAATAGGGGAGCAGGACAACTGAGCATCCGCTTAAATAGTTCAGAACAGCTTCAAATAGCTTTGATTGGTCTCATTCCGCTGCTTAGAAAGTTGTTCACTTACCCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008525 GO:0008526 GO:0008610 GO:0008654 GO:0009058 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019637 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032501 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044464 GO:0044703 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048193 GO:0048367 GO:0048468 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0061458 GO:0071702 GO:0071704 GO:0071840 GO:0090407 GO:0090567 GO:0097164 GO:0120009 GO:0120010 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

1235

Amino Acids

133.89

Weight (kDa)

4.75

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIG1	PF04548	609 - 767	5.7e-25	AIG1 family
MMR_HSR1	PF01926	611 - 698	1.5e-09	50S ribosome-binding GTPase
TOC159_MAD	PF11886	968 - 1232	7.1e-123	Translocase of chloroplast 159/132, membrane anchor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16380 AT2G16380 AT2G16380 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT4G34580 AT4G34580 AT4G39180 AT4G39180 AT4G39180
fragaria_vesca	FvH4_2g09420 FvH4_2g09420 FvH4_2g09420 FvH4_2g09490 FvH4_2g09490
malus_domestica	MD05G1062700.v1.1 MD05G1062800.v1.1 MD05G1062900.v1.1 MD10G1070400.v1.1 MD10G1070500.v1.1
prunus_persica	Prupe.8G092000_v2.0.a1 Prupe.8G092100_v2.0.a1 Prupe.8G092200_v2.0.a1
pyrus_communis	pycom05g05440 pycom10g05620 pycom10g05630
rosa_chinensis	RchiOBHm_Chr6g0265701 RchiOBHm_Chr6g0265771
rosa_laevigata	RLG00000014161 RLG00000014165
rosa_multiflora	Rmu_co8114364.1_g000001 Rmu_sc0000208.1_g000028 Rmu_sc0008535.1_g000015
rosa_roxburghii	Rroxscaffold_175G00432510 Rroxscaffold_175G00432560 Rroxscaffold_7G00202430
rosa_rugosa	Rorug06G0018500 Rorug06G0019000
rosa_samantha	Rh6AG140700 Rh6AG141500 Rh6BG141100 Rh6BG141400 Rh6CG137700 Rh6CG138000 Rh6DG124600 Rh6DG125000
rosa_wichuraiana	Rw6G012170 Rw6G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2261
Acc16I	TGCGCA	1 cut(s)	2144
Acc65I	GGTACC	2 cut(s)	1412, 1529
AccB1I	GGYRCC	3 cut(s)	1412, 1529, 1748
AccB7I	CCANNNNNTGG	2 cut(s)	1409, 2994
AccBSI	CCGCTC	1 cut(s)	1451
AccI	GTMKAC	2 cut(s)	651, 3562
AclI	AACGTT	1 cut(s)	2689
AclWI	GGATC	8 cut(s)	563, 905, 918, 1559, 1572, 2598, 2853, 3039
AcoI	YGGCCR	3 cut(s)	681, 2380, 3109
AcsI	RAATTY	5 cut(s)	754, 1423, 1631, 2663, 3350
AcuI	CTGAAG	6 cut(s)	987, 1598, 2478, 2543, 2625, 2670
AfeI	AGCGCT	1 cut(s)	2054
AfiI	CCNNNNNNNGG	5 cut(s)	1409, 1486, 1574, 2225, 2994
AflIII	ACRYGT	1 cut(s)	2256
AjnI	CCWGG	6 cut(s)	654, 1990, 2006, 2494, 2703, 3111
AloI	GAACNNNNNNTCC	2 cut(s)	3175, 3207
Alw26I	GTCTC	9 cut(s)	36, 134, 317, 335, 418, 1026, 1592, 3301, 3671
AlwI	GGATC	8 cut(s)	563, 905, 918, 1559, 1572, 2598, 2853, 3039
AlwNI	CAGNNNCTG	4 cut(s)	344, 737, 2648, 2900
Ama87I	CYCGRG	2 cut(s)	1518, 2222
Aor51HI	AGCGCT	1 cut(s)	2054
AoxI	GGCC	7 cut(s)	681, 1462, 2227, 2380, 2522, 2700, 3109
ApaI	GGGCCC	1 cut(s)	2231
ApoI	RAATTY	5 cut(s)	754, 1423, 1631, 2663, 3350
ArsI	GACNNNNNNTTYG	2 cut(s)	334, 366
AseI	ATTAAT	1 cut(s)	1572
Asp700I	GAANNNNTTC	2 cut(s)	1611, 3645
Asp718I	GGTACC	2 cut(s)	1412, 1529
AspA2I	CCTAGG	1 cut(s)	1499
AspLEI	GCGC	5 cut(s)	1318, 2055, 2145, 2240, 2322
AspS9I	GGNCC	6 cut(s)	1390, 2014, 2227, 2228, 2367, 2701
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	8 cut(s)	23, 56, 359, 2612, 2876, 3109, 3295, 3326
AvaI	CYCGRG	2 cut(s)	1518, 2222
AvaII	GGWCC	3 cut(s)	1390, 2014, 2367
AvrII	CCTAGG	1 cut(s)	1499
AxyI	CCTNAGG	3 cut(s)	1200, 1320, 2586
BaeGI	GKGCMC	1 cut(s)	2231
BaeI	ACNNNNGTAYC	2 cut(s)	834, 867
BalI	TGGCCA	3 cut(s)	683, 2382, 3111
BamHI	GGATCC	2 cut(s)	910, 1564
BanI	GGYRCC	3 cut(s)	1412, 1529, 1748
BanII	GRGCYC	2 cut(s)	2231, 3495
BauI	CACGAG	3 cut(s)	165, 1602, 3405
BbsI	GAAGAC	3 cut(s)	2506, 2631, 3351
BbvCI	CCTCAGC	2 cut(s)	57, 1269
BccI	CCATC	9 cut(s)	8, 281, 425, 515, 599, 1880, 1915, 2606, 3496
BcgI	CGANNNNNNTGC	2 cut(s)	2279, 2313
BciT130I	CCWGG	6 cut(s)	656, 1992, 2008, 2496, 2705, 3113
BclI	TGATCA	1 cut(s)	1620
BcnI	CCSGG	1 cut(s)	145
BcoDI	GTCTC	9 cut(s)	36, 134, 317, 335, 418, 1026, 1592, 3301, 3671
BfmI	CTRYAG	3 cut(s)	1152, 2835, 2871
BfoI	RGCGCY	2 cut(s)	2056, 2241
BglI	GCCNNNNNGGC	1 cut(s)	2235
BglII	AGATCT	1 cut(s)	3517
BlnI	CCTAGG	1 cut(s)	1499
BlpI	GCTNAGC	3 cut(s)	1174, 1713, 2049
BmcAI	AGTACT	1 cut(s)	937
Bme1390I	CCNGG	7 cut(s)	145, 656, 1992, 2008, 2496, 2705, 3113
Bme18I	GGWCC	3 cut(s)	1390, 2014, 2367
BmeT110I	CYCGRG	2 cut(s)	1518, 2222
BmgT120I	GGNCC	6 cut(s)	1390, 2014, 2227, 2228, 2367, 2701
BmiI	GGNNCC	8 cut(s)	912, 1326, 1414, 1531, 1566, 1750, 2229, 3371
BmrFI	CCNGG	7 cut(s)	145, 656, 1992, 2008, 2496, 2705, 3113
BmrI	ACTGGG	1 cut(s)	1712
BmuI	ACTGGG	1 cut(s)	1712
BoxI	GACNNNNGTC	1 cut(s)	2019
BpiI	GAAGAC	3 cut(s)	2506, 2631, 3351
BplI	GAGNNNNNCTC	4 cut(s)	2339, 2371, 2702, 2734
BpmI	CTGGAG	2 cut(s)	714, 2058
Bpu10I	CCTNAGC	3 cut(s)	57, 1269, 1686
Bpu1102I	GCTNAGC	3 cut(s)	1174, 1713, 2049
BpuEI	CTTGAG	1 cut(s)	820
BpuMI	CCSGG	1 cut(s)	145
Bsa29I	ATCGAT	1 cut(s)	2971
BsaBI	GATNNNNATC	2 cut(s)	2625, 3456
BsaI	GGTCTC	5 cut(s)	36, 134, 317, 1026, 3671
BsaJI	CCNNGG	6 cut(s)	1465, 1499, 1517, 1991, 2223, 2703
BsaWI	WCCGGW	1 cut(s)	3372
BsaXI	ACNNNNNCTCC	2 cut(s)	3428, 3458
Bsc4I	CCNNNNNNNGG	5 cut(s)	1409, 1486, 1574, 2225, 2994
Bse1I	ACTGG	7 cut(s)	307, 349, 731, 1707, 2906, 2992, 3554
Bse21I	CCTNAGG	3 cut(s)	1200, 1320, 2586
Bse3DI	GCAATG	2 cut(s)	3402, 3414
Bse8I	GATNNNNATC	2 cut(s)	2625, 3456
BseBI	CCWGG	6 cut(s)	656, 1992, 2008, 2496, 2705, 3113
BseCI	ATCGAT	1 cut(s)	2971
BseDI	CCNNGG	6 cut(s)	1465, 1499, 1517, 1991, 2223, 2703
BseJI	GATNNNNATC	2 cut(s)	2625, 3456
BseLI	CCNNNNNNNGG	5 cut(s)	1409, 1486, 1574, 2225, 2994
BseMI	GCAATG	2 cut(s)	3402, 3414
BseNI	ACTGG	7 cut(s)	307, 349, 731, 1707, 2906, 2992, 3554
BseRI	GAGGAG	7 cut(s)	83, 143, 239, 242, 1337, 1601, 2810
BseSI	GKGCMC	1 cut(s)	2231
BseYI	CCCAGC	3 cut(s)	2309, 3329, 3466
BsgI	GTGCAG	4 cut(s)	1179, 1403, 1979, 2913
Bsh1285I	CGRYCG	1 cut(s)	1765
BshFI	GGCC	7 cut(s)	683, 1464, 2229, 2382, 2524, 2702, 3111
BshNI	GGYRCC	3 cut(s)	1412, 1529, 1748
BshVI	ATCGAT	1 cut(s)	2971
BsiEI	CGRYCG	1 cut(s)	1765
BsiHKCI	CYCGRG	2 cut(s)	1518, 2222
BsiSI	CCGG	2 cut(s)	144, 3373
BslFI	GGGAC	4 cut(s)	160, 313, 1939, 3425
BslI	CCNNNNNNNGG	5 cut(s)	1409, 1486, 1574, 2225, 2994
BsmAI	GTCTC	9 cut(s)	36, 134, 317, 335, 418, 1026, 1592, 3301, 3671
BsmFI	GGGAC	4 cut(s)	160, 313, 1939, 3425
BsnI	GGCC	7 cut(s)	683, 1464, 2229, 2382, 2524, 2702, 3111
Bso31I	GGTCTC	5 cut(s)	36, 134, 317, 1026, 3671
BsoBI	CYCGRG	2 cut(s)	1518, 2222
Bsp120I	GGGCCC	1 cut(s)	2227
Bsp1286I	GDGCHC	2 cut(s)	2231, 3495
Bsp1407I	TGTACA	3 cut(s)	1019, 1695, 1826
Bsp1720I	GCTNAGC	3 cut(s)	1174, 1713, 2049
BspANI	GGCC	7 cut(s)	683, 1464, 2229, 2382, 2524, 2702, 3111
BspDI	ATCGAT	1 cut(s)	2971
BspHI	TCATGA	1 cut(s)	3034
BspLI	GGNNCC	8 cut(s)	912, 1326, 1414, 1531, 1566, 1750, 2229, 3371
BspMAI	CTGCAG	1 cut(s)	2839
BspPI	GGATC	8 cut(s)	563, 905, 918, 1559, 1572, 2598, 2853, 3039
BspQI	GCTCTTC	1 cut(s)	209
BspT107I	GGYRCC	3 cut(s)	1412, 1529, 1748
BspTNI	GGTCTC	5 cut(s)	36, 134, 317, 1026, 3671
BsrBI	CCGCTC	1 cut(s)	1451
BsrDI	GCAATG	2 cut(s)	3402, 3414
BsrGI	TGTACA	3 cut(s)	1019, 1695, 1826
BsrI	ACTGG	7 cut(s)	307, 349, 731, 1707, 2906, 2992, 3554
BssECI	CCNNGG	6 cut(s)	1465, 1499, 1517, 1991, 2223, 2703
BssSI	CACGAG	3 cut(s)	165, 1602, 3405
BssT1I	CCWWGG	2 cut(s)	1465, 1499
Bst2BI	CACGAG	3 cut(s)	165, 1602, 3405
Bst2UI	CCWGG	6 cut(s)	656, 1992, 2008, 2496, 2705, 3113
Bst6I	CTCTTC	6 cut(s)	111, 177, 209, 315, 369, 1352
BstAPI	GCANNNNNTGC	1 cut(s)	3401
BstAUI	TGTACA	3 cut(s)	1019, 1695, 1826
BstEII	GGTNACC	2 cut(s)	3115, 3301
BstH2I	RGCGCY	2 cut(s)	2056, 2241
BstHHI	GCGC	5 cut(s)	1318, 2055, 2145, 2240, 2322
BstMAI	GTCTC	9 cut(s)	36, 134, 317, 335, 418, 1026, 1592, 3301, 3671
BstMCI	CGRYCG	1 cut(s)	1765
BstNI	CCWGG	6 cut(s)	656, 1992, 2008, 2496, 2705, 3113
BstNSI	RCATGY	5 cut(s)	1400, 1496, 2110, 2134, 2260
BstPAI	GACNNNNGTC	1 cut(s)	2019
BstPI	GGTNACC	2 cut(s)	3115, 3301
BstSCI	CCNGG	7 cut(s)	143, 654, 1990, 2006, 2494, 2703, 3111
BstSFI	CTRYAG	3 cut(s)	1152, 2835, 2871
BstSLI	GKGCMC	1 cut(s)	2231
BstV2I	GAAGAC	3 cut(s)	2506, 2631, 3351
BstX2I	RGATCY	4 cut(s)	910, 1564, 2845, 3517
BstYI	RGATCY	4 cut(s)	910, 1564, 2845, 3517
Bsu15I	ATCGAT	1 cut(s)	2971
Bsu36I	CCTNAGG	3 cut(s)	1200, 1320, 2586
BsuRI	GGCC	7 cut(s)	683, 1464, 2229, 2382, 2524, 2702, 3111
BsuTUI	ATCGAT	1 cut(s)	2971
BtsIMutI	CAGTG	4 cut(s)	963, 1230, 2131, 2999
CaiI	CAGNNNCTG	4 cut(s)	344, 737, 2648, 2900
CciI	TCATGA	1 cut(s)	3034
CfoI	GCGC	5 cut(s)	1318, 2055, 2145, 2240, 2322
Cfr13I	GGNCC	6 cut(s)	1390, 2014, 2227, 2228, 2367, 2701
ClaI	ATCGAT	1 cut(s)	2971
CseI	GACGC	2 cut(s)	2009, 2199
CspCI	CAANNNNNGTGG	4 cut(s)	960, 995, 2342, 2377
DraI	TTTAAA	1 cut(s)	3594
DrdI	GACNNNNNNGTC	1 cut(s)	2261
DseDI	GACNNNNNNGTC	1 cut(s)	2261
EaeI	YGGCCR	3 cut(s)	681, 2380, 3109
Eam1104I	CTCTTC	6 cut(s)	111, 177, 209, 315, 369, 1352
EarI	CTCTTC	6 cut(s)	111, 177, 209, 315, 369, 1352
EciI	GGCGGA	3 cut(s)	1598, 1796, 2208
Eco130I	CCWWGG	2 cut(s)	1465, 1499
Eco24I	GRGCYC	2 cut(s)	2231, 3495
Eco31I	GGTCTC	5 cut(s)	36, 134, 317, 1026, 3671
Eco32I	GATATC	1 cut(s)	2975
Eco47I	GGWCC	3 cut(s)	1390, 2014, 2367
Eco47III	AGCGCT	1 cut(s)	2054
Eco57I	CTGAAG	6 cut(s)	987, 1598, 2478, 2543, 2625, 2670
Eco81I	CCTNAGG	3 cut(s)	1200, 1320, 2586
Eco88I	CYCGRG	2 cut(s)	1518, 2222
Eco91I	GGTNACC	2 cut(s)	3115, 3301
EcoO109I	RGGNCCY	1 cut(s)	2227
EcoO65I	GGTNACC	2 cut(s)	3115, 3301
EcoRII	CCWGG	6 cut(s)	654, 1990, 2006, 2494, 2703, 3111
EcoRV	GATATC	1 cut(s)	2975
EcoT14I	CCWWGG	2 cut(s)	1465, 1499
EcoT38I	GRGCYC	2 cut(s)	2231, 3495
ErhI	CCWWGG	2 cut(s)	1465, 1499
FalI	AAGNNNNNCTT	2 cut(s)	1048, 1080
FaqI	GGGAC	4 cut(s)	160, 313, 1939, 3425
FauI	CCCGC	4 cut(s)	262, 289, 556, 1456
FbaI	TGATCA	1 cut(s)	1620
FblI	GTMKAC	2 cut(s)	651, 3562
FriOI	GRGCYC	2 cut(s)	2231, 3495
FspI	TGCGCA	1 cut(s)	2144
GlaI	GCGC	5 cut(s)	1317, 2054, 2144, 2239, 2321
GsaI	CCCAGC	3 cut(s)	2313, 3333, 3470
GsuI	CTGGAG	2 cut(s)	714, 2058
HaeII	RGCGCY	2 cut(s)	2056, 2241
HaeIII	GGCC	7 cut(s)	683, 1464, 2229, 2382, 2524, 2702, 3111
HapII	CCGG	2 cut(s)	144, 3373
HgaI	GACGC	2 cut(s)	2009, 2199
HhaI	GCGC	5 cut(s)	1318, 2055, 2145, 2240, 2322
Hin6I	GCGC	5 cut(s)	1316, 2053, 2143, 2238, 2320
HinP1I	GCGC	5 cut(s)	1316, 2053, 2143, 2238, 2320
HincII	GTYRAC	2 cut(s)	652, 3563
HindII	GTYRAC	2 cut(s)	652, 3563
HindIII	AAGCTT	3 cut(s)	866, 1610, 2768
HpaII	CCGG	2 cut(s)	144, 3373
HphI	GGTGA	8 cut(s)	23, 56, 359, 2612, 2876, 3109, 3295, 3326
Hpy166II	GTNNAC	5 cut(s)	595, 652, 3476, 3563, 3693
Hpy8I	GTNNAC	5 cut(s)	595, 652, 3476, 3563, 3693
Hpy99I	CGWCG	1 cut(s)	2811
HpyCH4IV	ACGT	3 cut(s)	2689, 3039, 3141
HpySE526I	ACGT	3 cut(s)	2689, 3039, 3141
HspAI	GCGC	5 cut(s)	1316, 2053, 2143, 2238, 2320
KpnI	GGTACC	2 cut(s)	1416, 1533
Ksp22I	TGATCA	1 cut(s)	1620
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	6 cut(s)	733, 1081, 1324, 1783, 2221, 3605
MaeII	ACGT	3 cut(s)	2689, 3039, 3141
MaeIII	GTNAC	7 cut(s)	733, 856, 961, 2126, 2263, 3115, 3301
MbiI	CCGCTC	1 cut(s)	1451
MfeI	CAATTG	1 cut(s)	2187
MflI	RGATCY	4 cut(s)	910, 1564, 2845, 3517
MhlI	GDGCHC	2 cut(s)	2231, 3495
MlsI	TGGCCA	3 cut(s)	683, 2382, 3111
MluNI	TGGCCA	3 cut(s)	683, 2382, 3111
MmeI	TCCRAC	8 cut(s)	510, 1460, 1572, 1992, 2082, 2733, 3012, 3199
Mox20I	TGGCCA	3 cut(s)	683, 2382, 3111
MroXI	GAANNNNTTC	2 cut(s)	1611, 3645
MscI	TGGCCA	3 cut(s)	683, 2382, 3111
MseI	TTAA	6 cut(s)	1572, 1968, 3080, 3446, 3593, 3629
Msp20I	TGGCCA	3 cut(s)	683, 2382, 3111
MspA1I	CMGCKG	8 cut(s)	1178, 1277, 1460, 1720, 2834, 3329, 3466, 3676
MspI	CCGG	2 cut(s)	144, 3373
MspR9I	CCNGG	7 cut(s)	145, 656, 1992, 2008, 2496, 2705, 3113
MunI	CAATTG	1 cut(s)	2187
MvaI	CCWGG	6 cut(s)	656, 1992, 2008, 2496, 2705, 3113
NciI	CCSGG	1 cut(s)	145
NlaIV	GGNNCC	8 cut(s)	912, 1326, 1414, 1531, 1566, 1750, 2229, 3371
NmuCI	GTSAC	6 cut(s)	856, 961, 2126, 2263, 3115, 3301
NsbI	TGCGCA	1 cut(s)	2144
NspI	RCATGY	5 cut(s)	1400, 1496, 2110, 2134, 2260
PaeI	GCATGC	1 cut(s)	1400
PagI	TCATGA	1 cut(s)	3034
PciI	ACATGT	1 cut(s)	2256
PciSI	GCTCTTC	1 cut(s)	209
PdmI	GAANNNNTTC	2 cut(s)	1611, 3645
PflMI	CCANNNNNTGG	2 cut(s)	1409, 2994
PfoI	TCCNGGA	1 cut(s)	2494
PscI	ACATGT	1 cut(s)	2256
PshAI	GACNNNNGTC	1 cut(s)	2019
PshBI	ATTAAT	1 cut(s)	1572
Psp1406I	AACGTT	1 cut(s)	2689
Psp6I	CCWGG	6 cut(s)	654, 1990, 2006, 2494, 2703, 3111
PspEI	GGTNACC	2 cut(s)	3115, 3301
PspFI	CCCAGC	3 cut(s)	2309, 3329, 3466
PspGI	CCWGG	6 cut(s)	654, 1990, 2006, 2494, 2703, 3111
PspN4I	GGNNCC	8 cut(s)	912, 1326, 1414, 1531, 1566, 1750, 2229, 3371
PspOMI	GGGCCC	1 cut(s)	2227
PspPI	GGNCC	6 cut(s)	1390, 2014, 2227, 2228, 2367, 2701
PsrI	GAACNNNNNNTAC	2 cut(s)	2994, 3026
PstI	CTGCAG	1 cut(s)	2839
PstNI	CAGNNNCTG	4 cut(s)	344, 737, 2648, 2900
PsuI	RGATCY	4 cut(s)	910, 1564, 2845, 3517
PvuII	CAGCTG	6 cut(s)	1178, 1277, 1460, 1720, 2834, 3329
SalI	GTCGAC	2 cut(s)	650, 3561
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	6 cut(s)	1572, 1968, 3080, 3446, 3593, 3629
Sau96I	GGNCC	6 cut(s)	1390, 2014, 2227, 2228, 2367, 2701
ScaI	AGTACT	1 cut(s)	937
ScrFI	CCNGG	7 cut(s)	145, 656, 1992, 2008, 2496, 2705, 3113
SduI	GDGCHC	2 cut(s)	2231, 3495
SfcI	CTRYAG	3 cut(s)	1152, 2835, 2871
SinI	GGWCC	3 cut(s)	1390, 2014, 2367
SmiI	ATTTAAAT	1 cut(s)	3594
SmlI	CTYRAG	1 cut(s)	799
SmoI	CTYRAG	1 cut(s)	799
SphI	GCATGC	1 cut(s)	1400
StyD4I	CCNGG	7 cut(s)	143, 654, 1990, 2006, 2494, 2703, 3111
StyI	CCWWGG	2 cut(s)	1465, 1499
SwaI	ATTTAAAT	1 cut(s)	3594
TaiI	ACGT	3 cut(s)	2692, 3042, 3144
TaqI	TCGA	9 cut(s)	126, 449, 651, 1238, 1761, 2515, 2745, 2971, 3562
TaqII	GACCGA	1 cut(s)	3289
TatI	WGTACW	5 cut(s)	803, 935, 1019, 1695, 1826
TauI	GCSGC	3 cut(s)	1478, 1642, 2309
Tru1I	TTAA	6 cut(s)	1572, 1968, 3080, 3446, 3593, 3629
Tru9I	TTAA	6 cut(s)	1572, 1968, 3080, 3446, 3593, 3629
TscAI	CASTG	4 cut(s)	970, 1237, 2131, 2999
TseFI	GTSAC	6 cut(s)	856, 961, 2126, 2263, 3115, 3301
Tsp45I	GTSAC	6 cut(s)	856, 961, 2126, 2263, 3115, 3301
TspRI	CASTG	4 cut(s)	970, 1237, 2131, 2999
Van91I	CCANNNNNTGG	2 cut(s)	1409, 2994
VpaK11BI	GGWCC	3 cut(s)	1390, 2014, 2367
VspI	ATTAAT	1 cut(s)	1572
XapI	RAATTY	5 cut(s)	754, 1423, 1631, 2663, 3350
XbaI	TCTAGA	2 cut(s)	2977, 3013
XceI	RCATGY	5 cut(s)	1400, 1496, 2110, 2134, 2260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3145
XmaJI	CCTAGG	1 cut(s)	1499
XmiI	GTMKAC	2 cut(s)	651, 3562
XmnI	GAANNNNTTC	2 cut(s)	1611, 3645
ZrmI	AGTACT	1 cut(s)	937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.