RLG00000014161

Phosphatidylinositol phosphatidylcholine transfer protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
48346413 .. 48350131
3719 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014161

Sequence Viewer

Length: 1323 bp
ATGTCTGGACCTCTTGACCGACACCTAAAACCTGGTAAGTTCATTAATAAATCCCATGAATTTGAATACAAGGAAATTGATGAGGTTTTGAAATACTATCCCCAAGGCCATCATGGAGTTGATAAGGAGGGAAGACCAGTCTACATTGAGAGACTTGGTCAAGTGGATTCAACCAAGCTGATGCAAGTCACAACAATGGACCGTTATGTTAAATACCATGTACGGGAGTTTGAGAGGACCTTCGTCCATAAATTCCCTGCATGTTCCATTGCAGCAAAGAAGCACATTGATCAGAGCACCACTATTCTTGATGTACAAGGAGTGGGGCTTAAAAATTTCAATAAATCTGCGAGGGAACTTATTCAGTGCCTTCAGAAGATTGATGGCGACAATTATCCTGAGGTTCTTGGAAACAAATACCAGAGCAAGTTGCTTGAAATAATTGATGCTAGTGAGCTGCCAGAGTTTTTGGGTGGCACTTGTACTTGTGCAGATAAGGGTGGTTGCATGCGTTCCGATAAAGGCCCATGGAATGACCCAGATATAATGAAGATGGTTCACAATGGTGAGGGCAAATGCACAAGGAGAACATTATCAGGCATTGAGGAGAAGATAATCTCTGAAGATGAAATGTTTTACTCCAAGACATGTGATTCTTTCAACTCAAAAATAGCTCAAATGGAACATACAAAACTCTCTCATGTTCCTAAACAAGTTTCATTCACCAAAAAATCCAGTAAGGCCTATGAGTATGACAAGTTGATGCCAATGGTTGACAAGACCGTGGATGCAACTTGGCCTAAACCAGTTCATTATGATAAATTTGCCCACAGTCAAGCTACAGATTGCTTCCCCTCGCATAATGCTTGCAAGTCTTCTGAAGGACTAAGCAGTTACTTACTTTCTGGAATCATGGCCTTCATCATGGGAATTGTCACCATGATCCAATTGACACGAGACATGCCAAGGAAACTCACTGAGGCTGCCCTCTATGGAAGCCCTGCTTACTGCAATGGAATGGGGATGAAAGCCAAGCAGTTGCCGGCATCATCCATCTCCAGTGACACATATATGAACATGATGAAGCGCATGGCCGAGTTGGAGGAGAAAGTGAAAGTTCTCAGCACGAAACCAACTGTTATGCCCCCTGAGAAAGAGGAAATGTTGAACAATGCTCTCAACCGAGCCACAGCCTTGGAACAAGAGCTTTCAGCAACCAAGAAGGCGCTTGATGACGCCCTGGTCCGACAGAATGAGCTTATAGCCTACCTTGATAAGAAGAAAAAGAAGAAGAAACTGAAATTGAACCCATTTAAATGGTAA

Protein Analysis

441

Amino Acids

49.96

Weight (kDa)

8.87

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 31 - 139 1.8e-11 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1241
AccI GTMKAC 1 cut(s) 141
AclWI GGATC 1 cut(s) 937
AcoI YGGCCR 1 cut(s) 1092
AcsI RAATTY 4 cut(s) 59, 251, 334, 821
AcuI CTGAAG 3 cut(s) 356, 642, 900
AcyI GRCGYC 1 cut(s) 1236
AfaI GTAC 3 cut(s) 222, 315, 484
AfiI CCNNNNNNNGG 1 cut(s) 223
AflIII ACRYGT 1 cut(s) 647
AgsI TTSAA 8 cut(s) 65, 91, 171, 340, 437, 661, 1168, 1306
AjnI CCWGG 2 cut(s) 31, 1239
AleI CACNNNNGTG 1 cut(s) 564
AluBI AGCT 6 cut(s) 178, 457, 674, 839, 1207, 1258
AluI AGCT 6 cut(s) 178, 457, 674, 839, 1207, 1258
Alw21I GWGCWC 1 cut(s) 299
Alw26I GTCTC 2 cut(s) 145, 951
AlwI GGATC 1 cut(s) 937
AoxI GGCC 6 cut(s) 106, 523, 741, 797, 915, 1092
ApeKI GCWGC 3 cut(s) 272, 457, 983
ApoI RAATTY 4 cut(s) 59, 251, 334, 821
AseI ATTAAT 1 cut(s) 45
Asp700I GAANNNNTTC 1 cut(s) 360
AspLEI GCGC 2 cut(s) 1089, 1228
AspS9I GGNCC 5 cut(s) 8, 199, 237, 524, 1243
AsuHPI GGTGA 3 cut(s) 578, 715, 928
AvaII GGWCC 4 cut(s) 8, 199, 237, 1243
AxyI CCTNAGG 1 cut(s) 399
BauI CACGAG 1 cut(s) 954
BbsI GAAGAC 2 cut(s) 139, 867
Bbv12I GWGCWC 1 cut(s) 299
BbvI GCAGC 3 cut(s) 284, 444, 970
BccI CCATC 4 cut(s) 117, 377, 547, 1061
BciT130I CCWGG 2 cut(s) 33, 1241
BclI TGATCA 1 cut(s) 289
BcoDI GTCTC 2 cut(s) 145, 951
BfaI CTAG 1 cut(s) 450
BfmI CTRYAG 1 cut(s) 840
BfoI RGCGCY 1 cut(s) 1229
BisI GCNGC 3 cut(s) 273, 458, 984
BlsI GCNGC 3 cut(s) 274, 459, 985
Bme1390I CCNGG 2 cut(s) 33, 1241
Bme18I GGWCC 4 cut(s) 8, 199, 237, 1243
BmgT120I GGNCC 5 cut(s) 8, 199, 237, 524, 1243
BmrFI CCNGG 2 cut(s) 33, 1241
BmsI GCATC 5 cut(s) 171, 436, 753, 778, 1055
BoxI GACNNNNGTC 1 cut(s) 242
BpiI GAAGAC 2 cut(s) 139, 867
BpmI CTGGAG 1 cut(s) 1042
BsaHI GRCGYC 1 cut(s) 1236
BsaJI CCNNGG 6 cut(s) 103, 527, 783, 965, 1194, 1239
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse118I RCCGGY 1 cut(s) 1042
Bse1I ACTGG 4 cut(s) 137, 735, 806, 1059
Bse21I CCTNAGG 1 cut(s) 399
Bse3DI GCAATG 2 cut(s) 267, 1018
BseBI CCWGG 2 cut(s) 33, 1241
BseDI CCNNGG 6 cut(s) 103, 527, 783, 965, 1194, 1239
BseGI GGATG 3 cut(s) 793, 1029, 1049
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMI GCAATG 2 cut(s) 267, 1018
BseMII CTCAG 4 cut(s) 390, 969, 1135, 1140
BseNI ACTGG 4 cut(s) 137, 735, 806, 1059
BseRI GAGGAG 2 cut(s) 620, 1118
BseXI GCAGC 3 cut(s) 284, 444, 970
BsgI GTGCAG 1 cut(s) 510
BshFI GGCC 6 cut(s) 108, 525, 743, 799, 917, 1094
BsiHKAI GWGCWC 1 cut(s) 299
BsiSI CCGG 1 cut(s) 1043
BslI CCNNNNNNNGG 1 cut(s) 223
BsmAI GTCTC 2 cut(s) 145, 951
BsnI GGCC 6 cut(s) 108, 525, 743, 799, 917, 1094
Bsp1286I GDGCHC 1 cut(s) 299
Bsp1407I TGTACA 1 cut(s) 313
Bsp143I GATC 2 cut(s) 289, 942
Bsp19I CCATGG 1 cut(s) 527
BspANI GGCC 6 cut(s) 108, 525, 743, 799, 917, 1094
BspCNI CTCAG 4 cut(s) 391, 970, 1134, 1141
BspPI GGATC 1 cut(s) 937
BsrDI GCAATG 2 cut(s) 267, 1018
BsrFI RCCGGY 1 cut(s) 1042
BsrGI TGTACA 1 cut(s) 313
BsrI ACTGG 4 cut(s) 137, 735, 806, 1059
BssAI RCCGGY 1 cut(s) 1042
BssECI CCNNGG 6 cut(s) 103, 527, 783, 965, 1194, 1239
BssMI GATC 2 cut(s) 289, 942
BssNI GRCGYC 1 cut(s) 1236
BssSI CACGAG 1 cut(s) 954
BssT1I CCWWGG 4 cut(s) 103, 527, 965, 1194
Bst2BI CACGAG 1 cut(s) 954
Bst2UI CCWGG 2 cut(s) 33, 1241
Bst4CI ACNGT 4 cut(s) 203, 784, 833, 1138
BstACI GRCGYC 1 cut(s) 1236
BstAUI TGTACA 1 cut(s) 313
BstC8I GCNNGC 3 cut(s) 509, 868, 1044
BstDEI CTNAG 5 cut(s) 399, 887, 978, 1121, 1149
BstDSI CCRYGG 2 cut(s) 527, 783
BstF5I GGATG 3 cut(s) 793, 1029, 1049
BstH2I RGCGCY 1 cut(s) 1229
BstHHI GCGC 2 cut(s) 1089, 1228
BstKTI GATC 2 cut(s) 292, 945
BstMAI GTCTC 2 cut(s) 145, 951
BstMBI GATC 2 cut(s) 289, 942
BstNI CCWGG 2 cut(s) 33, 1241
BstNSI RCATGY 4 cut(s) 264, 511, 651, 964
BstPAI GACNNNNGTC 1 cut(s) 242
BstSCI CCNGG 2 cut(s) 31, 1239
BstSFI CTRYAG 1 cut(s) 840
BstV1I GCAGC 3 cut(s) 284, 444, 970
BstV2I GAAGAC 2 cut(s) 139, 867
BstXI CCANNNNNNTGG 2 cut(s) 1195, 1317
Bsu36I CCTNAGG 1 cut(s) 399
BsuRI GGCC 6 cut(s) 108, 525, 743, 799, 917, 1094
BtgI CCRYGG 2 cut(s) 527, 783
BtsCI GGATG 3 cut(s) 793, 1029, 1049
BtsIMutI CAGTG 3 cut(s) 371, 975, 1066
Cac8I GCNNGC 3 cut(s) 509, 868, 1044
CfoI GCGC 2 cut(s) 1089, 1228
Cfr10I RCCGGY 1 cut(s) 1042
Cfr13I GGNCC 5 cut(s) 8, 199, 237, 524, 1243
CseI GACGC 1 cut(s) 1244
CsiI ACCWGGT 1 cut(s) 31
Csp6I GTAC 3 cut(s) 221, 314, 483
CspCI CAANNNNNGTGG 2 cut(s) 289, 324
CviQI GTAC 3 cut(s) 221, 314, 483
DdeI CTNAG 5 cut(s) 399, 887, 978, 1121, 1149
DpnI GATC 2 cut(s) 291, 944
DpnII GATC 2 cut(s) 289, 942
DraI TTTAAA 1 cut(s) 1315
DrdI GACNNNNNNGTC 1 cut(s) 1241
DseDI GACNNNNNNGTC 1 cut(s) 1241
EaeI YGGCCR 1 cut(s) 1092
Eco130I CCWWGG 4 cut(s) 103, 527, 965, 1194
Eco147I AGGCCT 1 cut(s) 743
Eco47I GGWCC 4 cut(s) 8, 199, 237, 1243
Eco57I CTGAAG 3 cut(s) 356, 642, 900
Eco81I CCTNAGG 1 cut(s) 399
EcoO109I RGGNCCY 1 cut(s) 237
EcoRII CCWGG 2 cut(s) 31, 1239
EcoT14I CCWWGG 4 cut(s) 103, 527, 965, 1194
ErhI CCWWGG 4 cut(s) 103, 527, 965, 1194
FalI AAGNNNNNCTT 2 cut(s) 988, 1020
FbaI TGATCA 1 cut(s) 289
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 3 cut(s) 273, 458, 984
FokI GGATG 3 cut(s) 800, 1036, 1036
Fsp4HI GCNGC 3 cut(s) 273, 458, 984
FspBI CTAG 1 cut(s) 450
GlaI GCGC 2 cut(s) 1088, 1227
GluI GCNGC 3 cut(s) 273, 458, 984
GsuI CTGGAG 1 cut(s) 1042
HaeII RGCGCY 1 cut(s) 1229
HaeIII GGCC 6 cut(s) 108, 525, 743, 799, 917, 1094
HapII CCGG 1 cut(s) 1043
HgaI GACGC 1 cut(s) 1244
HhaI GCGC 2 cut(s) 1089, 1228
Hin1I GRCGYC 1 cut(s) 1236
Hin6I GCGC 2 cut(s) 1087, 1226
HinP1I GCGC 2 cut(s) 1087, 1226
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HinfI GANTC 3 cut(s) 167, 653, 909
HpaII CCGG 1 cut(s) 1043
HphI GGTGA 3 cut(s) 578, 715, 928
Hpy166II GTNNAC 3 cut(s) 142, 559, 775
Hpy188I TCNGA 6 cut(s) 294, 375, 517, 622, 880, 1247
Hpy188III TCNNGA 5 cut(s) 6, 14, 308, 398, 906
Hpy8I GTNNAC 3 cut(s) 142, 559, 775
HpyAV CCTTC 5 cut(s) 250, 380, 875, 928, 1216
HpyCH4III ACNGT 4 cut(s) 203, 784, 833, 1138
HpyCH4V TGCA 9 cut(s) 184, 260, 272, 491, 507, 579, 791, 870, 1011
HpyF3I CTNAG 5 cut(s) 399, 887, 978, 1121, 1149
Hsp92I GRCGYC 1 cut(s) 1236
HspAI GCGC 2 cut(s) 1087, 1226
KroI GCCGGC 1 cut(s) 1042
KroNI GCCGGC 1 cut(s) 1044
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 2 cut(s) 289, 942
Lsp1109I GCAGC 3 cut(s) 284, 444, 970
LweI GCATC 5 cut(s) 171, 436, 753, 778, 1055
MabI ACCWGGT 1 cut(s) 31
MaeI CTAG 1 cut(s) 450
MaeIII GTNAC 4 cut(s) 187, 893, 934, 1061
MalI GATC 2 cut(s) 291, 944
MboI GATC 2 cut(s) 289, 942
MboII GAAGA 9 cut(s) 144, 388, 562, 622, 635, 867, 1291, 1300, 1303
MfeI CAATTG 1 cut(s) 947
MhlI GDGCHC 1 cut(s) 299
MmeI TCCRAC 2 cut(s) 1080, 1270
MroNI GCCGGC 1 cut(s) 1042
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 4 cut(s) 45, 210, 330, 1314
MslI CAYNNNNRTG 4 cut(s) 194, 564, 1070, 1315
MspI CCGG 1 cut(s) 1043
MspR9I CCNGG 2 cut(s) 33, 1241
MunI CAATTG 1 cut(s) 947
MvaI CCWGG 2 cut(s) 33, 1241
NaeI GCCGGC 1 cut(s) 1044
NcoI CCATGG 1 cut(s) 527
NdeII GATC 2 cut(s) 289, 942
NgoMIV GCCGGC 1 cut(s) 1042
NmeAIII GCCGAG 1 cut(s) 1120
NmuCI GTSAC 3 cut(s) 187, 934, 1061
NspI RCATGY 4 cut(s) 264, 511, 651, 964
OliI CACNNNNGTG 1 cut(s) 564
PaeI GCATGC 1 cut(s) 511
PceI AGGCCT 1 cut(s) 743
PciI ACATGT 1 cut(s) 647
PdiI GCCGGC 1 cut(s) 1044
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 3 cut(s) 167, 653, 909
PflFI GACNNNGTC 1 cut(s) 156
PkrI GCNGC 3 cut(s) 274, 459, 985
PpuMI RGGWCCY 1 cut(s) 237
PscI ACATGT 1 cut(s) 647
PshAI GACNNNNGTC 1 cut(s) 242
PshBI ATTAAT 1 cut(s) 45
Psp5II RGGWCCY 1 cut(s) 237
Psp6I CCWGG 2 cut(s) 31, 1239
PspGI CCWGG 2 cut(s) 31, 1239
PspPI GGNCC 5 cut(s) 8, 199, 237, 524, 1243
PspPPI RGGWCCY 1 cut(s) 237
PsyI GACNNNGTC 1 cut(s) 156
RsaI GTAC 3 cut(s) 222, 315, 484
RsaNI GTAC 3 cut(s) 221, 314, 483
RseI CAYNNNNRTG 4 cut(s) 194, 564, 1070, 1315
SaqAI TTAA 4 cut(s) 45, 210, 330, 1314
SatI GCNGC 3 cut(s) 273, 458, 984
Sau3AI GATC 2 cut(s) 289, 942
Sau96I GGNCC 5 cut(s) 8, 199, 237, 524, 1243
ScrFI CCNGG 2 cut(s) 33, 1241
SduI GDGCHC 1 cut(s) 299
SexAI ACCWGGT 1 cut(s) 31
SfaNI GCATC 5 cut(s) 171, 436, 753, 778, 1055
SfcI CTRYAG 1 cut(s) 840
SinI GGWCC 4 cut(s) 8, 199, 237, 1243
SmiI ATTTAAAT 1 cut(s) 1315
SmiMI CAYNNNNRTG 4 cut(s) 194, 564, 1070, 1315
SphI GCATGC 1 cut(s) 511
SseBI AGGCCT 1 cut(s) 743
SspMI CTAG 1 cut(s) 450
StuI AGGCCT 1 cut(s) 743
StyD4I CCNGG 2 cut(s) 31, 1239
StyI CCWWGG 4 cut(s) 103, 527, 965, 1194
SwaI ATTTAAAT 1 cut(s) 1315
TaaI ACNGT 4 cut(s) 203, 784, 833, 1138
TaqII GACCGA 1 cut(s) 33
TatI WGTACW 2 cut(s) 313, 482
TfiI GAWTC 3 cut(s) 167, 653, 909
Tru1I TTAA 4 cut(s) 45, 210, 330, 1314
Tru9I TTAA 4 cut(s) 45, 210, 330, 1314
TscAI CASTG 3 cut(s) 371, 982, 1066
TseFI GTSAC 3 cut(s) 187, 934, 1061
TseI GCWGC 3 cut(s) 272, 457, 983
Tsp45I GTSAC 3 cut(s) 187, 934, 1061
TspRI CASTG 3 cut(s) 371, 982, 1066
Tth111I GACNNNGTC 1 cut(s) 156
VpaK11BI GGWCC 4 cut(s) 8, 199, 237, 1243
VspI ATTAAT 1 cut(s) 45
XapI RAATTY 4 cut(s) 59, 251, 334, 821
XceI RCATGY 4 cut(s) 264, 511, 651, 964
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.