AT4G39180

Phosphatidylinositol phosphatidylcholine transfer protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
18243726 .. 18248805
5080 bp
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UTR
Exon/CDS
Intron
AT4G39180.3

Sequence Viewer

Length: 1665 bp
ATGGCGGATACAATGGTTGCTCATATGGACCGACATAATAAGATAGATGTTGAGATCTCAGAAGATGACAAGAGATTAACAAAGCTTTGCTCTCTAAAGAAGAAGGCTATAAATGCGACGAACAAGTTTAAGCACTCAATGACCAAGAAAGGTCGAAGGCATAGCCGTGTGGCGTGTGTCTCAATCGTCGATGAAATCGATACAGAAGAGTTGCAAGCGGTTGATGCTTTCCGTCAAGCTCTTATTTTAGACGAACTACTTCCCTCTAAGCATGATGATCATCACATGATGCTTAGGTTCTTGAGGGCAAGAAAGTTTGATCTCGAAAAGGCTAAGCAAATGTGGTCTGATATGCTTAACTGGAGGAAAGAATATGGCGCAGACACGATCATGGAGGACTTTGATTTCAAAGAAATCGAAGAAGTGGTTAAGTATTATCCACAAGGATATCATGGTGTTGACAAGGAAGGAAGACCTATCTATATTGAGAGGCTAGGCCAAGTTGATGCCACAAAGCTGATGAAAGTGACCACAATTGATAGGTACGTGAAGTACCATGTGAAAGAGTTCGAGAAGACTTTCAACGTCAAATTCCCTGCTTGTTCCATCGCTGCGAAACGACACATTGATCAGAGCACAACGATCTTGGATGTTCAAGGCGTGGGGCTTAGTAACTTCAACAAAGCTGCAAAAGATCTTCTTCAGAGTATTCAGAAAATCGACAACGATAACTACCCTGAGACGCTGAACCGTATGTTCATCATCAATGCTGGTTGTGGGTTTAGGCTTTTATGGAACACAGTGAAATCTTTCCTTGACCCAAAGACTACAGCAAAGATTCACGTTCTTGGCAACAAATACCAAACCAAACTTCTAGAAATCATTGACGCCAATGAACTGCCTGAGTTCTTGGGTGGTAAGTGCACCTGCGCAGACAAAGGTGGATGTATGCGTTCAGACAAAGGTCCATGGAACGACCCTGAGATCTTCAAGTTGGTTCAGAACGGTGAAGGTAGATGCCTGCGAAGGAGCTTGTCAGGGATCGAGGAAAAGACAATCTTTGAGTATAACAACGAAACAAAGAAGAAATGCGAACCAGAAGAGACTCACAAGCAATCTGCTGCGGAGATGGAGAAGAAGTTCATCGACACGAATGTGGATGCTGCAGCGGCTGCTGATTGGCCTACAAAGCTTAACAAGGCTGAAAAAAACCCTACCGACCTTAAAGATGTGTACTCAGCTGTGAATCCGTTGGAGAGGAAAGGGTACTTATATGGCAGCGTCATGGCATTGCTAATGGGGATAGTGGGAGTGATGAGGCTAACCAAGAACATGCCAAGGAGGCTCACCGAGGCAAATGTTTATAGCCGTGAAGGCAGCGCCGTCTACCAGGACGGAGTGACTGTTATGTCGAAGCAGGAGTATATTGCGATGGTGAAGAAGATAACAGATCTTGAGGAGAAATGTAAGTCCATGGAAGCTCAGGCTGCGTTTTATATGGAGAGGGAGAAGACTCTAGACGCTGCACTTCGTCGTATTGACCAGCTCGAGCTTCAGTTGTCTGAAACCAACAAGGCACTAGACGAGACAATGACGAGGCAACATGAGATAATGGCTTTCATCGAGAAGAAAAAGAAGAAGAAGCGGAAGTTCTTATTATTCTAG

Protein Analysis

554

Amino Acids

63.86

Weight (kDa)

8.76

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_N PF03765 90 - 116 5.6e-08 CRAL/TRIO, N-terminal domain
CRAL_TRIO PF00650 144 - 306 2e-31 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 935
AasI GACNNNNNNGTC 1 cut(s) 1408
Acc16I TGCGCA 1 cut(s) 931
Acc36I ACCTGC 1 cut(s) 935
AccI GTMKAC 1 cut(s) 1386
AciI CCGC 5 cut(s) 5, 218, 1124, 1169, 1645
AclWI GGATC 1 cut(s) 1049
AcsI RAATTY 1 cut(s) 590
AcuI CTGAAG 2 cut(s) 686, 1538
AcyI GRCGYC 1 cut(s) 888
AfaI GTAC 4 cut(s) 545, 554, 1235, 1268
AgsI TTSAA 5 cut(s) 409, 583, 656, 679, 991
AjnI CCWGG 1 cut(s) 1389
AjuI GAANNNNNNNTTGG 2 cut(s) 855, 887
AleI CACNNNNGTG 1 cut(s) 1154
AloI GAACNNNNNNTCC 2 cut(s) 1124, 1156
Alw21I GWGCWC 2 cut(s) 638, 926
Alw26I GTCTC 4 cut(s) 184, 734, 1097, 1580
Alw44I GTGCAC 1 cut(s) 922
AlwI GGATC 1 cut(s) 1049
AlwNI CAGNNNCTG 1 cut(s) 1172
Ama87I CYCGRG 1 cut(s) 1547
AoxI GGCC 2 cut(s) 496, 1181
ApaLI GTGCAC 1 cut(s) 922
ApoI RAATTY 1 cut(s) 590
Asp700I GAANNNNTTC 5 cut(s) 258, 566, 578, 809, 1139
AspLEI GCGC 3 cut(s) 380, 932, 1382
AspS9I GGNCC 2 cut(s) 28, 965
AsuHPI GGTGA 3 cut(s) 1019, 1339, 1447
AvaI CYCGRG 1 cut(s) 1547
AvaII GGWCC 2 cut(s) 28, 965
BaeGI GKGCMC 1 cut(s) 926
BaeI ACNNNNGTAYC 1 cut(s) 33
BbsI GAAGAC 3 cut(s) 478, 581, 1517
Bbv12I GWGCWC 2 cut(s) 638, 926
BccI CCATC 3 cut(s) 614, 1123, 1426
BceAI ACGGC 3 cut(s) 150, 1353, 1367
BciT130I CCWGG 1 cut(s) 1391
BclI TGATCA 2 cut(s) 277, 628
BcoDI GTCTC 4 cut(s) 184, 734, 1097, 1580
BfaI CTAG 5 cut(s) 494, 875, 1517, 1580, 1663
BfmI CTRYAG 2 cut(s) 828, 1164
BfoI RGCGCY 1 cut(s) 1383
BfuAI ACCTGC 1 cut(s) 935
BglI GCCNNNNNGGC 2 cut(s) 1342, 1374
BglII AGATCT 4 cut(s) 54, 694, 984, 1450
BlpI GCTNAGC 1 cut(s) 333
Bme1390I CCNGG 1 cut(s) 1391
Bme18I GGWCC 2 cut(s) 28, 965
BmeT110I CYCGRG 1 cut(s) 1547
BmgT120I GGNCC 2 cut(s) 28, 965
BmrFI CCNGG 1 cut(s) 1391
BmsI GCATC 5 cut(s) 214, 279, 496, 1007, 1150
BoxI GACNNNNGTC 1 cut(s) 963
BpiI GAAGAC 3 cut(s) 478, 581, 1517
BpmI CTGGAG 1 cut(s) 382
Bpu10I CCTNAGC 2 cut(s) 293, 1482
Bpu1102I GCTNAGC 1 cut(s) 333
BpuEI CTTGAG 2 cut(s) 322, 1475
Bsa29I ATCGAT 1 cut(s) 198
BsaAI YACGTR 1 cut(s) 547
BsaBI GATNNNNATC 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 888
BsaJI CCNNGG 4 cut(s) 968, 1337, 1350, 1473
BsaXI ACNNNNNCTCC 4 cut(s) 1124, 1154, 1389, 1419
Bse1I ACTGG 1 cut(s) 365
Bse3DI GCAATG 1 cut(s) 1289
Bse8I GATNNNNATC 1 cut(s) 279
BseBI CCWGG 1 cut(s) 1391
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 4 cut(s) 968, 1337, 1350, 1473
BseGI GGATG 3 cut(s) 655, 950, 1165
BseJI GATNNNNATC 1 cut(s) 279
BseMI GCAATG 1 cut(s) 1289
BseMII CTCAG 6 cut(s) 72, 729, 894, 972, 1251, 1496
BseNI ACTGG 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 1472
BseSI GKGCMC 1 cut(s) 926
BsgI GTGCAG 1 cut(s) 1509
BshFI GGCC 2 cut(s) 498, 1183
BshVI ATCGAT 1 cut(s) 198
BsiHKAI GWGCWC 2 cut(s) 638, 926
BsiHKCI CYCGRG 1 cut(s) 1547
BsmAI GTCTC 4 cut(s) 184, 734, 1097, 1580
BsmBI CGTCTC 1 cut(s) 734
BsnI GGCC 2 cut(s) 498, 1183
BsoBI CYCGRG 1 cut(s) 1547
Bsp1286I GDGCHC 2 cut(s) 638, 926
Bsp1720I GCTNAGC 1 cut(s) 333
Bsp19I CCATGG 2 cut(s) 968, 1473
BspACI CCGC 5 cut(s) 5, 218, 1124, 1169, 1645
BspANI GGCC 2 cut(s) 498, 1183
BspCNI CTCAG 6 cut(s) 71, 730, 895, 973, 1250, 1495
BspDI ATCGAT 1 cut(s) 198
BspMAI CTGCAG 1 cut(s) 1168
BspMI ACCTGC 1 cut(s) 935
BspPI GGATC 1 cut(s) 1049
BsrDI GCAATG 1 cut(s) 1289
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 4 cut(s) 968, 1337, 1350, 1473
BssNI GRCGYC 1 cut(s) 888
BssT1I CCWWGG 3 cut(s) 968, 1337, 1473
Bst2UI CCWGG 1 cut(s) 1391
Bst4CI ACNGT 4 cut(s) 752, 802, 1007, 1405
Bst6I CTCTTC 2 cut(s) 201, 1095
BstACI GRCGYC 1 cut(s) 888
BstAPI GCANNNNNTGC 1 cut(s) 1172
BstBAI YACGTR 1 cut(s) 547
BstC8I GCNNGC 2 cut(s) 216, 1022
BstDSI CCRYGG 2 cut(s) 968, 1473
BstF5I GGATG 3 cut(s) 655, 950, 1165
BstH2I RGCGCY 1 cut(s) 1383
BstHHI GCGC 3 cut(s) 380, 932, 1382
BstMAI GTCTC 4 cut(s) 184, 734, 1097, 1580
BstMWI GCNNNNNNNGC 8 cut(s) 113, 224, 1169, 1172, 1189, 1342, 1374, 1487
BstNI CCWGG 1 cut(s) 1391
BstNSI RCATGY 1 cut(s) 1336
BstPAI GACNNNNGTC 1 cut(s) 963
BstSCI CCNGG 1 cut(s) 1389
BstSFI CTRYAG 2 cut(s) 828, 1164
BstSLI GKGCMC 1 cut(s) 926
BstV2I GAAGAC 3 cut(s) 478, 581, 1517
BstX2I RGATCY 4 cut(s) 54, 694, 984, 1450
BstYI RGATCY 4 cut(s) 54, 694, 984, 1450
Bsu15I ATCGAT 1 cut(s) 198
BsuRI GGCC 2 cut(s) 498, 1183
BsuTUI ATCGAT 1 cut(s) 198
BtgI CCRYGG 2 cut(s) 968, 1473
BtgZI GCGATG 2 cut(s) 592, 1445
BtsCI GGATG 3 cut(s) 655, 950, 1165
BtsIMutI CAGTG 1 cut(s) 807
BveI ACCTGC 1 cut(s) 935
Cac8I GCNNGC 2 cut(s) 216, 1022
CaiI CAGNNNCTG 1 cut(s) 1172
CfoI GCGC 3 cut(s) 380, 932, 1382
Cfr13I GGNCC 2 cut(s) 28, 965
ClaI ATCGAT 1 cut(s) 198
CseI GACGC 4 cut(s) 751, 896, 1270, 1529
Csp6I GTAC 4 cut(s) 544, 553, 1234, 1267
CviQI GTAC 4 cut(s) 544, 553, 1234, 1267
DrdI GACNNNNNNGTC 1 cut(s) 1408
DseDI GACNNNNNNGTC 1 cut(s) 1408
Eam1104I CTCTTC 2 cut(s) 201, 1095
EarI CTCTTC 2 cut(s) 201, 1095
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 3 cut(s) 968, 1337, 1473
Eco32I GATATC 1 cut(s) 449
Eco47I GGWCC 2 cut(s) 28, 965
Eco57I CTGAAG 2 cut(s) 686, 1538
Eco88I CYCGRG 1 cut(s) 1547
EcoRII CCWGG 1 cut(s) 1389
EcoRV GATATC 1 cut(s) 449
EcoT14I CCWWGG 3 cut(s) 968, 1337, 1473
ErhI CCWWGG 3 cut(s) 968, 1337, 1473
Esp3I CGTCTC 1 cut(s) 734
FalI AAGNNNNNCTT 4 cut(s) 684, 716, 1043, 1075
FauNDI CATATG 1 cut(s) 24
FbaI TGATCA 2 cut(s) 277, 628
FblI GTMKAC 1 cut(s) 1386
FokI GGATG 3 cut(s) 662, 957, 1172
FspBI CTAG 5 cut(s) 494, 875, 1517, 1580, 1663
FspI TGCGCA 1 cut(s) 931
GlaI GCGC 3 cut(s) 379, 931, 1381
GsuI CTGGAG 1 cut(s) 382
HaeII RGCGCY 1 cut(s) 1383
HaeIII GGCC 2 cut(s) 498, 1183
HgaI GACGC 4 cut(s) 751, 896, 1270, 1529
HhaI GCGC 3 cut(s) 380, 932, 1382
Hin1I GRCGYC 1 cut(s) 888
Hin6I GCGC 3 cut(s) 378, 930, 1380
HinP1I GCGC 3 cut(s) 378, 930, 1380
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HindIII AAGCTT 2 cut(s) 83, 1190
HinfI GANTC 4 cut(s) 838, 1105, 1246, 1513
HphI GGTGA 3 cut(s) 1019, 1339, 1447
Hpy166II GTNNAC 4 cut(s) 460, 924, 1234, 1387
Hpy188I TCNGA 8 cut(s) 61, 349, 633, 705, 714, 958, 1002, 1564
Hpy188III TCNNGA 7 cut(s) 301, 323, 571, 875, 1454, 1517, 1624
Hpy8I GTNNAC 4 cut(s) 460, 924, 1234, 1387
Hpy99I CGWCG 3 cut(s) 121, 191, 1536
HpyAV CCTTC 6 cut(s) 97, 150, 461, 1004, 1020, 1367
HpyCH4III ACNGT 4 cut(s) 752, 802, 1007, 1405
HpyCH4IV ACGT 3 cut(s) 546, 585, 843
HpyCH4V TGCA 5 cut(s) 214, 689, 924, 1166, 1526
HpyF10VI GCNNNNNNNGC 8 cut(s) 113, 224, 1169, 1172, 1189, 1342, 1374, 1487
HpySE526I ACGT 3 cut(s) 546, 585, 843
Hsp92I GRCGYC 1 cut(s) 888
HspAI GCGC 3 cut(s) 378, 930, 1380
Ksp22I TGATCA 2 cut(s) 277, 628
LmnI GCTCC 1 cut(s) 1029
LweI GCATC 5 cut(s) 214, 279, 496, 1007, 1150
MaeI CTAG 5 cut(s) 494, 875, 1517, 1580, 1663
MaeII ACGT 3 cut(s) 546, 585, 843
MaeIII GTNAC 3 cut(s) 526, 671, 1399
MfeI CAATTG 1 cut(s) 534
MflI RGATCY 4 cut(s) 54, 694, 984, 1450
MhlI GDGCHC 2 cut(s) 638, 926
MluCI AATT 2 cut(s) 534, 590
MlyI GAGTC 2 cut(s) 1099, 1507
MmeI TCCRAC 1 cut(s) 1233
MroXI GAANNNNTTC 5 cut(s) 258, 566, 578, 809, 1139
MseI TTAA 6 cut(s) 77, 129, 357, 429, 1194, 1224
MslI CAYNNNNRTG 3 cut(s) 165, 389, 1154
MspA1I CMGCKG 2 cut(s) 1169, 1241
MspR9I CCNGG 1 cut(s) 1391
MunI CAATTG 1 cut(s) 534
MvaI CCWGG 1 cut(s) 1391
MwoI GCNNNNNNNGC 8 cut(s) 113, 224, 1169, 1172, 1189, 1342, 1374, 1487
NcoI CCATGG 2 cut(s) 968, 1473
NdeI CATATG 1 cut(s) 24
NmuCI GTSAC 2 cut(s) 526, 1399
NsbI TGCGCA 1 cut(s) 931
NspI RCATGY 1 cut(s) 1336
OliI CACNNNNGTG 1 cut(s) 1154
PaeR7I CTCGAG 1 cut(s) 1547
PaqCI CACCTGC 1 cut(s) 935
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PdmI GAANNNNTTC 5 cut(s) 258, 566, 578, 809, 1139
PfeI GAWTC 2 cut(s) 838, 1246
PleI GAGTC 2 cut(s) 1099, 1507
PpsI GAGTC 2 cut(s) 1099, 1507
Ppu21I YACGTR 1 cut(s) 547
PshAI GACNNNNGTC 1 cut(s) 963
Psp6I CCWGG 1 cut(s) 1389
PspGI CCWGG 1 cut(s) 1389
PspPI GGNCC 2 cut(s) 28, 965
PspXI VCTCGAGB 1 cut(s) 1547
PstI CTGCAG 1 cut(s) 1168
PstNI CAGNNNCTG 1 cut(s) 1172
PsuI RGATCY 4 cut(s) 54, 694, 984, 1450
PvuII CAGCTG 1 cut(s) 1241
RsaI GTAC 4 cut(s) 545, 554, 1235, 1268
RsaNI GTAC 4 cut(s) 544, 553, 1234, 1267
RseI CAYNNNNRTG 3 cut(s) 165, 389, 1154
SaqAI TTAA 6 cut(s) 77, 129, 357, 429, 1194, 1224
Sau96I GGNCC 2 cut(s) 28, 965
SchI GAGTC 2 cut(s) 1099, 1507
ScrFI CCNGG 1 cut(s) 1391
SduI GDGCHC 2 cut(s) 638, 926
SfaNI GCATC 5 cut(s) 214, 279, 496, 1007, 1150
SfcI CTRYAG 2 cut(s) 828, 1164
Sfr274I CTCGAG 1 cut(s) 1547
SinI GGWCC 2 cut(s) 28, 965
SlaI CTCGAG 1 cut(s) 1547
SmiMI CAYNNNNRTG 3 cut(s) 165, 389, 1154
SmlI CTYRAG 3 cut(s) 301, 1454, 1547
SmoI CTYRAG 3 cut(s) 301, 1454, 1547
Sse9I AATT 2 cut(s) 534, 590
SsiI CCGC 5 cut(s) 5, 218, 1124, 1169, 1645
SspMI CTAG 5 cut(s) 494, 875, 1517, 1580, 1663
StyD4I CCNGG 1 cut(s) 1389
StyI CCWWGG 3 cut(s) 968, 1337, 1473
TaaI ACNGT 4 cut(s) 752, 802, 1007, 1405
TaiI ACGT 3 cut(s) 549, 588, 846
TaqII GACCGA 1 cut(s) 45
TasI AATT 2 cut(s) 534, 590
TatI WGTACW 1 cut(s) 1233
TauI GCSGC 1 cut(s) 1172
TfiI GAWTC 2 cut(s) 838, 1246
Tru1I TTAA 6 cut(s) 77, 129, 357, 429, 1194, 1224
Tru9I TTAA 6 cut(s) 77, 129, 357, 429, 1194, 1224
TscAI CASTG 1 cut(s) 807
TseFI GTSAC 2 cut(s) 526, 1399
Tsp45I GTSAC 2 cut(s) 526, 1399
TspDTI ATGAA 6 cut(s) 207, 536, 748, 909, 1132, 1609
TspGWI ACGGA 3 cut(s) 221, 1239, 1410
TspRI CASTG 1 cut(s) 807
VneI GTGCAC 1 cut(s) 922
VpaK11BI GGWCC 2 cut(s) 28, 965
XapI RAATTY 1 cut(s) 590
XbaI TCTAGA 2 cut(s) 874, 1516
XceI RCATGY 1 cut(s) 1336
XhoI CTCGAG 1 cut(s) 1547
XmiI GTMKAC 1 cut(s) 1386
XmnI GAANNNNTTC 5 cut(s) 258, 566, 578, 809, 1139
XspI CTAG 5 cut(s) 494, 875, 1517, 1580, 1663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.