Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001414

Physical Location & Seq

Genomic Coordinates Reverse (-)

11004884 .. 11005782

Gene Structure 899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1062800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGAGGATAACATTGATGCAGAGGAGTTAAAGGCAGTGGACGCATTCCGCCAAGCACTTATTTTGGAAGAACTACTGCCTGTAAAACACGATGATCATCATATGATGCTAAGATTTTTAAGGGCCAGGAAATTTGACGTTGAGAAGGCAAAGAAAATGTGGACTGACATGCTTCAGTGGAGAAAGGAATTTGGTGCTGACACCATCATGGAGGACTTCGATTTCAAGGAATTTGATGAAGTTTTGAAGTACTATCCCCAAGGACATCACGGAGTTGATAAGGATGGACGACCTGTCTACATTGAGAGACTTGGTCAAGTTGATTCTAACAAACTGATGCAAGTGACAACAATGGAGTGTTACGTGAAGTTCCATGTTCGGGAGTTTGAGAGGACCTTTGTTAGTAAATTCCCAGCATGTTCTATTGCAGCAAAGAAGCACATTGATCAGAGCACCACTATTCTTGATGTCCAAGGAGTGGGGTTTAAAAATTTCAACAAATCTGCAAGGGACCTCATCCAGACCCGTCAGAACATCGATGGTGGCAAATATCCTGAGGTATCCTGTAAATTTCATTTCAATTTTTGTGCAACAAGCTTTCTTGGTTTGCTTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008525 GO:0008526 GO:0008610 GO:0008654 GO:0009058 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019637 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032501 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044464 GO:0044703 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048193 GO:0048367 GO:0048468 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0061458 GO:0071702 GO:0071704 GO:0071840 GO:0090407 GO:0090567 GO:0097164 GO:0120009 GO:0120010 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

206

Amino Acids

23.98

Weight (kDa)

6.25

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	29 - 56	8.6e-10	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	83 - 193	6.1e-09	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16380 AT2G16380 AT2G16380 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT4G34580 AT4G34580 AT4G39180 AT4G39180 AT4G39180
fragaria_vesca	FvH4_2g09420 FvH4_2g09420 FvH4_2g09420 FvH4_2g09490 FvH4_2g09490
malus_domestica	MD05G1062700.v1.1 MD05G1062800.v1.1 MD05G1062900.v1.1 MD10G1070400.v1.1 MD10G1070500.v1.1
prunus_persica	Prupe.8G092000_v2.0.a1 Prupe.8G092100_v2.0.a1 Prupe.8G092200_v2.0.a1
pyrus_communis	pycom05g05440 pycom10g05620 pycom10g05630
rosa_chinensis	RchiOBHm_Chr6g0265701 RchiOBHm_Chr6g0265771
rosa_laevigata	RLG00000014161 RLG00000014165
rosa_multiflora	Rmu_co8114364.1_g000001 Rmu_sc0000208.1_g000028 Rmu_sc0008535.1_g000015
rosa_roxburghii	Rroxscaffold_175G00432510 Rroxscaffold_175G00432560 Rroxscaffold_7G00202430
rosa_rugosa	Rorug06G0018500 Rorug06G0019000
rosa_samantha	Rh6AG140700 Rh6AG141500 Rh6BG141100 Rh6BG141400 Rh6CG137700 Rh6CG138000 Rh6DG124600 Rh6DG125000
rosa_wichuraiana	Rw6G012170 Rw6G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	478
AccI	GTMKAC	1 cut(s)	297
AciI	CCGC	1 cut(s)	49
AcsI	RAATTY	6 cut(s)	131, 188, 230, 407, 490, 569
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	379, 478
AgsI	TTSAA	4 cut(s)	226, 247, 496, 580
AhdI	GACNNNNNGTC	1 cut(s)	293
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	1 cut(s)	597
AluI	AGCT	1 cut(s)	597
Alw21I	GWGCWC	1 cut(s)	455
Alw26I	GTCTC	1 cut(s)	301
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	6 cut(s)	131, 188, 230, 407, 490, 569
AspS9I	GGNCC	3 cut(s)	123, 393, 511
AvaII	GGWCC	2 cut(s)	393, 511
AxyI	CCTNAGG	1 cut(s)	555
Bbv12I	GWGCWC	1 cut(s)	455
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	3 cut(s)	212, 278, 533
BciT130I	CCWGG	1 cut(s)	127
BciVI	GTATCC	1 cut(s)	571
BclI	TGATCA	2 cut(s)	94, 445
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	1 cut(s)	616
BfuI	GTATCC	1 cut(s)	571
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
BmcAI	AGTACT	1 cut(s)	251
Bme1390I	CCNGG	1 cut(s)	127
Bme18I	GGWCC	2 cut(s)	393, 511
BmeRI	GACNNNNNGTC	1 cut(s)	293
BmgT120I	GGNCC	3 cut(s)	123, 393, 511
BmiI	GGNNCC	1 cut(s)	512
BmrFI	CCNGG	1 cut(s)	127
BmsI	GCATC	3 cut(s)	7, 96, 327
Bsa29I	ATCGAT	1 cut(s)	537
BsaAI	YACGTR	1 cut(s)	364
BsaBI	GATNNNNATC	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	259, 472
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 478
Bse21I	CCTNAGG	1 cut(s)	555
Bse8I	GATNNNNATC	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	127
BseCI	ATCGAT	1 cut(s)	537
BseDI	CCNNGG	2 cut(s)	259, 472
BseGI	GGATG	2 cut(s)	289, 516
BseJI	GATNNNNATC	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	379, 478
BseMII	CTCAG	1 cut(s)	546
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	440
BseYI	CCCAGC	1 cut(s)	412
BshFI	GGCC	1 cut(s)	125
BshVI	ATCGAT	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	2 cut(s)	379, 478
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	524
BsmI	GAATGC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	455
Bsp143I	GATC	2 cut(s)	94, 445
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	547
BspDI	ATCGAT	1 cut(s)	537
BspLI	GGNNCC	1 cut(s)	512
BssECI	CCNNGG	2 cut(s)	259, 472
BssMI	GATC	2 cut(s)	94, 445
BssT1I	CCWWGG	2 cut(s)	259, 472
Bst2UI	CCWGG	1 cut(s)	127
BstBAI	YACGTR	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	612
BstDEI	CTNAG	2 cut(s)	110, 555
BstF5I	GGATG	2 cut(s)	289, 516
BstKTI	GATC	2 cut(s)	97, 448
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	2 cut(s)	94, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	127
BstNSI	RCATGY	2 cut(s)	172, 420
BstSCI	CCNGG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	440
Bsu15I	ATCGAT	1 cut(s)	537
Bsu36I	CCTNAGG	1 cut(s)	555
BsuI	GTATCC	1 cut(s)	571
BsuRI	GGCC	1 cut(s)	125
BsuTUI	ATCGAT	1 cut(s)	537
BtsCI	GGATG	2 cut(s)	289, 516
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	42, 182
Cac8I	GCNNGC	1 cut(s)	612
Cfr13I	GGNCC	3 cut(s)	123, 393, 511
ClaI	ATCGAT	1 cut(s)	537
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	250
CspCI	CAANNNNNGTGG	2 cut(s)	445, 480
CviAII	CATG	4 cut(s)	169, 208, 374, 417
CviJI	RGCY	2 cut(s)	125, 597
CviKI_1	RGCY	2 cut(s)	125, 597
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	2 cut(s)	110, 555
DpnI	GATC	2 cut(s)	96, 447
DpnII	GATC	2 cut(s)	94, 445
DraI	TTTAAA	1 cut(s)	487
DriI	GACNNNNNGTC	1 cut(s)	293
Eam1105I	GACNNNNNGTC	1 cut(s)	293
EciI	GGCGGA	1 cut(s)	38
Eco130I	CCWWGG	2 cut(s)	259, 472
Eco47I	GGWCC	2 cut(s)	393, 511
Eco57I	CTGAAG	1 cut(s)	158
Eco81I	CCTNAGG	1 cut(s)	555
EcoO109I	RGGNCCY	2 cut(s)	393, 511
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	2 cut(s)	259, 472
ErhI	CCWWGG	2 cut(s)	259, 472
FaeI	CATG	4 cut(s)	172, 211, 377, 420
FaiI	YATR	6 cut(s)	102, 104, 170, 209, 375, 418
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	4 cut(s)	168, 207, 373, 416
FauNDI	CATATG	1 cut(s)	102
FbaI	TGATCA	2 cut(s)	94, 445
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	2 cut(s)	296, 503
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	1 cut(s)	616
GluI	GCNGC	1 cut(s)	429
GsaI	CCCAGC	1 cut(s)	416
HaeIII	GGCC	1 cut(s)	125
HgaI	GACGC	1 cut(s)	50
Hin1II	CATG	4 cut(s)	172, 211, 377, 420
HindIII	AAGCTT	1 cut(s)	595
HinfI	GANTC	1 cut(s)	323
Hpy166II	GTNNAC	3 cut(s)	40, 162, 298
Hpy188I	TCNGA	2 cut(s)	450, 531
Hpy188III	TCNNGA	4 cut(s)	380, 464, 520, 554
Hpy8I	GTNNAC	3 cut(s)	40, 162, 298
HpyAV	CCTTC	1 cut(s)	139
HpyCH4IV	ACGT	2 cut(s)	138, 363
HpyCH4V	TGCA	5 cut(s)	20, 340, 428, 506, 590
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	2 cut(s)	110, 555
HpySE526I	ACGT	2 cut(s)	138, 363
Hsp92II	CATG	4 cut(s)	172, 211, 377, 420
Ksp22I	TGATCA	2 cut(s)	94, 445
Kzo9I	GATC	2 cut(s)	94, 445
LpnPI	CCDG	8 cut(s)	93, 112, 139, 306, 426, 533, 567, 577
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	3 cut(s)	7, 96, 327
MaeI	CTAG	1 cut(s)	616
MaeII	ACGT	2 cut(s)	138, 363
MaeIII	GTNAC	2 cut(s)	343, 359
MalI	GATC	2 cut(s)	96, 447
MboI	GATC	2 cut(s)	94, 445
MboII	GAAGA	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	455
MluCI	AATT	7 cut(s)	131, 188, 230, 407, 490, 569, 580
MnlI	CCTC	5 cut(s)	16, 205, 384, 524, 550
MseI	TTAA	3 cut(s)	29, 119, 486
MslI	CAYNNNNRTG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	127
Mva1269I	GAATGC	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeI	CATATG	1 cut(s)	102
NdeII	GATC	2 cut(s)	94, 445
NlaIII	CATG	4 cut(s)	172, 211, 377, 420
NlaIV	GGNNCC	1 cut(s)	512
NmuCI	GTSAC	1 cut(s)	343
NspI	RCATGY	2 cut(s)	172, 420
PctI	GAATGC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	323
PflFI	GACNNNGTC	1 cut(s)	312
PflMI	CCANNNNNTGG	1 cut(s)	478
PkrI	GCNGC	1 cut(s)	430
Ppu21I	YACGTR	1 cut(s)	364
PpuMI	RGGWCCY	2 cut(s)	393, 511
Psp5II	RGGWCCY	2 cut(s)	393, 511
Psp6I	CCWGG	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	512
PspPI	GGNCC	3 cut(s)	123, 393, 511
PspPPI	RGGWCCY	2 cut(s)	393, 511
PsyI	GACNNNGTC	1 cut(s)	312
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	3 cut(s)	29, 119, 486
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	2 cut(s)	94, 445
Sau96I	GGNCC	3 cut(s)	123, 393, 511
ScaI	AGTACT	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	455
SetI	ASST	7 cut(s)	141, 295, 366, 398, 516, 561, 599
SfaNI	GCATC	3 cut(s)	7, 96, 327
SinI	GGWCC	2 cut(s)	393, 511
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	7 cut(s)	131, 188, 230, 407, 490, 569, 580
SsiI	CCGC	1 cut(s)	49
SspMI	CTAG	1 cut(s)	616
StyD4I	CCNGG	1 cut(s)	125
StyI	CCWWGG	2 cut(s)	259, 472
TaiI	ACGT	2 cut(s)	141, 366
TaqI	TCGA	2 cut(s)	219, 537
TasI	AATT	7 cut(s)	131, 188, 230, 407, 490, 569, 580
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	3 cut(s)	29, 119, 486
Tru9I	TTAA	3 cut(s)	29, 119, 486
TscAI	CASTG	2 cut(s)	42, 182
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	2 cut(s)	252, 563
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	2 cut(s)	42, 182
Tth111I	GACNNNGTC	1 cut(s)	312
Van91I	CCANNNNNTGG	1 cut(s)	478
VpaK11BI	GGWCC	2 cut(s)	393, 511
XapI	RAATTY	6 cut(s)	131, 188, 230, 407, 490, 569
XceI	RCATGY	2 cut(s)	172, 420
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	1 cut(s)	616
ZrmI	AGTACT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.