Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8114364.1

Orthogroup ID

OG0001414

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 614

Gene Structure 614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8114364.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ctaagaagcacattgatcagagcaccactattcttgatgtacaaggagtggggcttaaaaatttcaataaatctgcgagggaacttattcagtgccttcagaagattgatggcgacaattatcctgagaccctgaaccgtatgttcatcattaatgctggttctggatttaggcttttatggaacactgtcaaatctttccttgatcccaagaccactgcaaaaatcaatgtaagcatttgttttgctcacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008525 GO:0008526 GO:0008610 GO:0008654 GO:0009058 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019637 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032501 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044464 GO:0044703 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048193 GO:0048367 GO:0048468 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0061458 GO:0071702 GO:0071704 GO:0071840 GO:0090407 GO:0090567 GO:0097164 GO:0120009 GO:0120010 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

83

Amino Acids

9.37

Weight (kDa)

9.34

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16380 AT2G16380 AT2G16380 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT4G34580 AT4G34580 AT4G39180 AT4G39180 AT4G39180
fragaria_vesca	FvH4_2g09420 FvH4_2g09420 FvH4_2g09420 FvH4_2g09490 FvH4_2g09490
malus_domestica	MD05G1062700.v1.1 MD05G1062800.v1.1 MD05G1062900.v1.1 MD10G1070400.v1.1 MD10G1070500.v1.1
prunus_persica	Prupe.8G092000_v2.0.a1 Prupe.8G092100_v2.0.a1 Prupe.8G092200_v2.0.a1
pyrus_communis	pycom05g05440 pycom10g05620 pycom10g05630
rosa_chinensis	RchiOBHm_Chr6g0265701 RchiOBHm_Chr6g0265771
rosa_laevigata	RLG00000014161 RLG00000014165
rosa_multiflora	Rmu_co8114364.1_g000001 Rmu_sc0000208.1_g000028 Rmu_sc0008535.1_g000015
rosa_roxburghii	Rroxscaffold_175G00432510 Rroxscaffold_175G00432560 Rroxscaffold_7G00202430
rosa_rugosa	Rorug06G0018500 Rorug06G0019000
rosa_samantha	Rh6AG140700 Rh6AG141500 Rh6BG141100 Rh6BG141400 Rh6CG137700 Rh6CG138000 Rh6DG124600 Rh6DG125000
rosa_wichuraiana	Rw6G012170 Rw6G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	60
AcuI	CTGAAG	1 cut(s)	82
AfaI	GTAC	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	66
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	60
AseI	ATTAAT	1 cut(s)	152
Asp700I	GAANNNNTTC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	25
BccI	CCATC	1 cut(s)	103
BclI	TGATCA	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	121
Bso31I	GGTCTC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	15, 204
BspCNI	CTCAG	1 cut(s)	117
BspPI	GGATC	1 cut(s)	199
BspTNI	GGTCTC	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	39
BssMI	GATC	2 cut(s)	15, 204
Bst4CI	ACNGT	2 cut(s)	139, 189
BstAUI	TGTACA	1 cut(s)	39
BstDEI	CTNAG	2 cut(s)	2, 125
BstKTI	GATC	2 cut(s)	18, 207
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	2 cut(s)	15, 204
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	3 cut(s)	97, 185, 215
Csp6I	GTAC	1 cut(s)	40
CspCI	CAANNNNNGTGG	2 cut(s)	15, 50
CviJI	RGCY	2 cut(s)	54, 174
CviKI_1	RGCY	2 cut(s)	54, 174
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	2, 125
DpnI	GATC	2 cut(s)	17, 206
DpnII	GATC	2 cut(s)	15, 204
Eco31I	GGTCTC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	82
FaiI	YATR	2 cut(s)	142, 180
FbaI	TGATCA	1 cut(s)	15
HphI	GGTGA	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	20, 101
Hpy188III	TCNNGA	3 cut(s)	34, 124, 164
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	2 cut(s)	139, 189
HpyCH4V	TGCA	1 cut(s)	220
HpyF3I	CTNAG	2 cut(s)	2, 125
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	15, 204
LpnPI	CCDG	4 cut(s)	137, 143, 145, 149
MalI	GATC	2 cut(s)	17, 206
MboI	GATC	2 cut(s)	15, 204
MboII	GAAGA	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	2 cut(s)	60, 117
MnlI	CCTC	1 cut(s)	71
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	2 cut(s)	56, 152
NdeII	GATC	2 cut(s)	15, 204
PdmI	GAANNNNTTC	1 cut(s)	86
PshBI	ATTAAT	1 cut(s)	152
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SaqAI	TTAA	2 cut(s)	56, 152
Sau3AI	GATC	2 cut(s)	15, 204
SduI	GDGCHC	1 cut(s)	25
SgeI	CNNG	9 cut(s)	46, 55, 89, 136, 144, 170, 176, 214, 222
Sse9I	AATT	2 cut(s)	60, 117
TaaI	ACNGT	2 cut(s)	139, 189
TasI	AATT	2 cut(s)	60, 117
TatI	WGTACW	1 cut(s)	39
Tru1I	TTAA	2 cut(s)	56, 152
Tru9I	TTAA	2 cut(s)	56, 152
TscAI	CASTG	3 cut(s)	97, 192, 222
TspDTI	ATGAA	1 cut(s)	135
TspRI	CASTG	3 cut(s)	97, 192, 222
VspI	ATTAAT	1 cut(s)	152
XapI	RAATTY	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.