Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Reverse (-)

12767610 .. 12770668

Gene Structure 3059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G29960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCGAAAGCAAGCTTTATTCTACTCGGAACTCTCTTCCTCTTCGGAGCCATAGCTTCAATTCAGGCAAAAGAAGATCTCAAGGAGGTTACTCACAAGGTTTACTTCGATGTAGAGATCGACGGCAAATCCGCTGGTCGCGTTGTTATAGGACTATTTGGCAAGGCAGTTCCTAAAACTGCAGAAAACTTCAGAGCTTTGTGCACAGGGGAGAAAGGTGTAGGGAAGAGTGGGAAACCTCTACACTACAAGGGAAGCAAGTTCCATCGAATCATTCCCAGCTTTATGATCCAGGGAGGTGACTTCACGCATGGGAACGGTATGGGTGGAGAATCAATCTATGGTCAGAAGTTTGCTGATGAGAACTTCAAGCTGAAGCACACTGGACCAGGTGTACTTTCAATGGCGAACTCGGGAGAAGACACAAATGGTTCGCAGTTTTTTATCACAACGGTGACAACAAGCTGGTTAGATGGAAGGCATGTGGTGTTTGGGAAAGTGGTGCAAGGAATGGATGTAGTTTATAAGATTGAAGCTGAGGGCAAACAAAGCGGAACTCCTAAGAGCAAAGTCGTAATTGCAGACAGTGGAGAACTTCCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022622 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0055044 GO:0071704 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

201

Amino Acids

21.53

Weight (kDa)

9.06

Isoelectric Point (pI)

13.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	35 - 185	2.9e-39	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	525
AccII	CGCG	1 cut(s)	141
AciI	CCGC	2 cut(s)	132, 552
AclWI	GGATC	1 cut(s)	283
AcuI	CTGAAG	2 cut(s)	175, 395
AfaI	GTAC	1 cut(s)	396
AgsI	TTSAA	4 cut(s)	60, 370, 402, 533
AjnI	CCWGG	2 cut(s)	291, 388
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	7 cut(s)	15, 56, 197, 282, 373, 465, 536
AluI	AGCT	7 cut(s)	15, 56, 197, 282, 373, 465, 536
Alw21I	GWGCWC	1 cut(s)	206
Alw44I	GTGCAC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	283
Ama87I	CYCGRG	1 cut(s)	412
ApaLI	GTGCAC	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	2 cut(s)	311, 466
AvaI	CYCGRG	1 cut(s)	412
AvaII	GGWCC	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	206
BbvCI	CCTCAGC	1 cut(s)	537
BccI	CCATC	2 cut(s)	273, 467
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	2 cut(s)	293, 390
BfmI	CTRYAG	1 cut(s)	180
BglII	AGATCT	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	293, 390
Bme18I	GGWCC	1 cut(s)	386
BmeT110I	CYCGRG	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	2 cut(s)	293, 390
BpiI	GAAGAC	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	388
BseBI	CCWGG	2 cut(s)	293, 390
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	1 cut(s)	520
BseMII	CTCAG	1 cut(s)	528
BseNI	ACTGG	1 cut(s)	388
BseSI	GKGCMC	1 cut(s)	206
BseYI	CCCAGC	1 cut(s)	278
Bsh1236I	CGCG	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	412
BsoBI	CYCGRG	1 cut(s)	412
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	3 cut(s)	76, 117, 288
BspACI	CCGC	2 cut(s)	132, 552
BspCNI	CTCAG	1 cut(s)	529
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	49
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	3 cut(s)	76, 117, 288
Bst2UI	CCWGG	2 cut(s)	293, 390
Bst4CI	ACNGT	3 cut(s)	320, 454, 587
Bst6I	CTCTTC	3 cut(s)	41, 47, 221
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	2 cut(s)	537, 561
BstF5I	GGATG	1 cut(s)	520
BstFNI	CGCG	1 cut(s)	141
BstKTI	GATC	3 cut(s)	79, 120, 291
BstMBI	GATC	3 cut(s)	76, 117, 288
BstMWI	GCNNNNNNNGC	1 cut(s)	549
BstNI	CCWGG	2 cut(s)	293, 390
BstNSI	RCATGY	1 cut(s)	485
BstSCI	CCNGG	2 cut(s)	291, 388
BstSFI	CTRYAG	1 cut(s)	180
BstSLI	GKGCMC	1 cut(s)	206
BstUI	CGCG	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	520
BtsIMutI	CAGTG	2 cut(s)	381, 592
Cac8I	GCNNGC	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	386
CsiI	ACCWGGT	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	395
CviAII	CATG	2 cut(s)	311, 482
CviJI	RGCY	8 cut(s)	15, 50, 56, 197, 282, 373, 465, 536
CviKI_1	RGCY	8 cut(s)	15, 50, 56, 197, 282, 373, 465, 536
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	2 cut(s)	537, 561
DpnI	GATC	3 cut(s)	78, 119, 290
DpnII	GATC	3 cut(s)	76, 117, 288
Eam1104I	CTCTTC	3 cut(s)	41, 47, 221
EarI	CTCTTC	3 cut(s)	41, 47, 221
Eco47I	GGWCC	1 cut(s)	386
Eco57I	CTGAAG	2 cut(s)	175, 395
Eco88I	CYCGRG	1 cut(s)	412
EcoRII	CCWGG	2 cut(s)	291, 388
FaeI	CATG	2 cut(s)	314, 485
FaiI	YATR	8 cut(s)	53, 149, 287, 312, 323, 342, 483, 525
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FatI	CATG	2 cut(s)	310, 481
FokI	GGATG	1 cut(s)	527
GsaI	CCCAGC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	314, 485
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	2 cut(s)	270, 332
HphI	GGTGA	2 cut(s)	311, 466
Hpy166II	GTNNAC	3 cut(s)	103, 204, 395
Hpy188I	TCNGA	4 cut(s)	29, 47, 194, 348
Hpy188III	TCNNGA	1 cut(s)	414
Hpy8I	GTNNAC	3 cut(s)	103, 204, 395
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	471
HpyCH4III	ACNGT	3 cut(s)	320, 454, 587
HpyCH4V	TGCA	4 cut(s)	182, 204, 505, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	549
HpyF3I	CTNAG	2 cut(s)	537, 561
Hsp92II	CATG	2 cut(s)	314, 485
Kzo9I	GATC	3 cut(s)	76, 117, 288
LmnI	GCTCC	1 cut(s)	47
MabI	ACCWGGT	1 cut(s)	388
MaeIII	GTNAC	3 cut(s)	88, 299, 454
MalI	GATC	3 cut(s)	78, 119, 290
MboI	GATC	3 cut(s)	76, 117, 288
MboII	GAAGA	5 cut(s)	28, 34, 86, 238, 431
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	2 cut(s)	60, 576
MnlI	CCTC	5 cut(s)	50, 79, 249, 290, 532
MslI	CAYNNNNRTG	1 cut(s)	452
MspA1I	CMGCKG	1 cut(s)	134
MspR9I	CCNGG	2 cut(s)	293, 390
MvaI	CCWGG	2 cut(s)	293, 390
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	549
NdeII	GATC	3 cut(s)	76, 117, 288
NlaIII	CATG	2 cut(s)	314, 485
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	2 cut(s)	299, 454
NspI	RCATGY	1 cut(s)	485
OliI	CACNNNNGTG	1 cut(s)	452
PfeI	GAWTC	2 cut(s)	270, 332
PsiI	TTATAA	1 cut(s)	525
Psp6I	CCWGG	2 cut(s)	291, 388
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	2 cut(s)	291, 388
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
RseI	CAYNNNNRTG	1 cut(s)	452
Sau3AI	GATC	3 cut(s)	76, 117, 288
Sau96I	GGNCC	1 cut(s)	386
ScrFI	CCNGG	2 cut(s)	293, 390
SduI	GDGCHC	1 cut(s)	206
SexAI	ACCWGGT	1 cut(s)	388
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	2 cut(s)	60, 576
SsiI	CCGC	2 cut(s)	132, 552
StyD4I	CCNGG	2 cut(s)	291, 388
TaaI	ACNGT	3 cut(s)	320, 454, 587
TaqI	TCGA	3 cut(s)	108, 120, 268
TasI	AATT	2 cut(s)	60, 576
TatI	WGTACW	1 cut(s)	394
TfiI	GAWTC	2 cut(s)	270, 332
TscAI	CASTG	2 cut(s)	388, 592
TseFI	GTSAC	2 cut(s)	299, 454
Tsp45I	GTSAC	2 cut(s)	299, 454
TspRI	CASTG	2 cut(s)	388, 592
VneI	GTGCAC	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	386
XceI	RCATGY	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.