Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Reverse (-)

45839155 .. 45839589

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG326200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCCCGGAAGGTTGGTTTCTGCAGCAGCTCTTTTGTGGGGTTTGCTTCTCTTGGCGACATTAGTTGTCATTCTGAATCGATTTAGCAATGATAAAGTCCTATCAGAGCCAAACACCCTCAAAAACAAAAGTGAGATTGTTGAGGTGAGAGGATTGATTCTTACTCTAAGCACCCAATTTTCTGTGGAAGCAGACAGAGCTTATGGTTTGTGTTTCTGGGTTTGGCAGGAAAGTGATGATTTGGAACAAGTGACCCACCAAGTATTCTTCGATATCGAAATCGATGGAAAACCCATTGGTATGAATTCTTTAACAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

106

Amino Acids

11.87

Weight (kDa)

4.58

Isoelectric Point (pI)

27.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	304
AluBI	AGCT	2 cut(s)	29, 200
AluI	AGCT	2 cut(s)	29, 200
ApeKI	GCWGC	2 cut(s)	23, 26
ApoI	RAATTY	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	157
BbvI	GCAGC	2 cut(s)	35, 38
BccI	CCATC	1 cut(s)	278
BcnI	CCSGG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	2 cut(s)	24, 27
BlsI	GCNGC	2 cut(s)	25, 28
Bme1390I	CCNGG	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	6
BpuMI	CCSGG	1 cut(s)	6
Bsa29I	ATCGAT	2 cut(s)	79, 282
Bse3DI	GCAATG	1 cut(s)	94
BseCI	ATCGAT	2 cut(s)	79, 282
BseMI	GCAATG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	35, 38
BshVI	ATCGAT	2 cut(s)	79, 282
BsiSI	CCGG	1 cut(s)	6
BspDI	ATCGAT	2 cut(s)	79, 282
BspMAI	CTGCAG	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	4
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	35, 38
Bsu15I	ATCGAT	2 cut(s)	79, 282
BsuTUI	ATCGAT	2 cut(s)	79, 282
ClaI	ATCGAT	2 cut(s)	79, 282
CviJI	RGCY	3 cut(s)	29, 109, 200
CviKI_1	RGCY	3 cut(s)	29, 109, 200
DdeI	CTNAG	1 cut(s)	167
Eco32I	GATATC	1 cut(s)	274
EcoRI	GAATTC	1 cut(s)	304
EcoRV	GATATC	1 cut(s)	274
FaiI	YATR	2 cut(s)	204, 302
Fnu4HI	GCNGC	2 cut(s)	24, 27
Fsp4HI	GCNGC	2 cut(s)	24, 27
GluI	GCNGC	2 cut(s)	24, 27
HapII	CCGG	1 cut(s)	6
HinfI	GANTC	2 cut(s)	76, 157
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	75, 106
HpyAV	CCTTC	1 cut(s)	3
HpyCH4V	TGCA	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	167
LpnPI	CCDG	3 cut(s)	19, 202, 212
Lsp1109I	GCAGC	2 cut(s)	35, 38
MaeIII	GTNAC	1 cut(s)	250
MboII	GAAGA	1 cut(s)	259
MluCI	AATT	2 cut(s)	176, 304
MnlI	CCTC	3 cut(s)	128, 136, 143
MseI	TTAA	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	299
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	197
NciI	CCSGG	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	76, 157
PkrI	GCNGC	2 cut(s)	25, 28
PstI	CTGCAG	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	2 cut(s)	24, 27
ScrFI	CCNGG	1 cut(s)	6
SetI	ASST	4 cut(s)	14, 31, 147, 202
SfcI	CTRYAG	1 cut(s)	21
SgeI	CNNG	7 cut(s)	17, 18, 64, 229, 239, 260, 272
SmiMI	CAYNNNNRTG	1 cut(s)	299
Sse9I	AATT	2 cut(s)	176, 304
StyD4I	CCNGG	1 cut(s)	4
TaqI	TCGA	4 cut(s)	79, 270, 276, 282
TasI	AATT	2 cut(s)	176, 304
TfiI	GAWTC	2 cut(s)	76, 157
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	2 cut(s)	23, 26
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	317
XapI	RAATTY	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.