Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Reverse (-)

61388402 .. 61390107

Gene Structure 1706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG339800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCCCAGAAGGTTGGTTTCTGCCGCAGCTCTTTTGTGGGGTTTGCTTCTCTTGGCGACATTAGTTGTCATTCTGAATCGATTTAGCAATGATAAAGTCCTATCAGAGCCAAACACCCTCAAAAGCAAAAGTGAGATTGTTGAGGAAAGTGATGATCTGGAACAAGTCACCCACCAAGTTTTCTTCGACATCGAAATCGATGGAAAACCCGTTGGTCGCATAGTCATGGGTCTTTTTGGAAAAACAGTTCCAAAAACCATAGAGAACTTTCGAGCACTATGCACTGGGGAGAAGGGAATTGGAAAGAGTATGAAACCTCTGCACTACAAAGGGAGTATATTTCATAGAATTATTCCCAGCTTTATGATTCAGGGAGGGGATTTCACTCTTGGCGATGGAAGAGGTGGAGAATCGATTTATGGGGAAAAGTTTGCAGATGAAAACTTCAAAGTAAAGCACACTGGACCAGGTTATTTATCAATGGCAAATTCTGGCCAAGACACCAATGGATCACAGTTCTTCATCACAACTGTCAAAACTAGCTGGTTGGATGGTCACCATGTTGTATTTGGCAAGGTGCTTTCTGGAATGGACGTTGTGTACAAGGTTGAACGAGTAGGAGGATCGGATGGGATACCTAAGAGTGAGGTTGTTATCAAAGACAGTGGTGCACTTCCGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

227

Amino Acids

24.78

Weight (kDa)

7.02

Isoelectric Point (pI)

22.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	61 - 221	5.5e-47	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	2 cut(s)	517, 631
AcoI	YGGCCR	1 cut(s)	493
AcsI	RAATTY	1 cut(s)	487
AfaI	GTAC	1 cut(s)	602
AgsI	TTSAA	2 cut(s)	448, 611
AjnI	CCWGG	1 cut(s)	466
AloI	GAACNNNNNNTCC	2 cut(s)	231, 263
AluBI	AGCT	3 cut(s)	29, 360, 543
AluI	AGCT	3 cut(s)	29, 360, 543
Alw21I	GWGCWC	2 cut(s)	277, 673
Alw44I	GTGCAC	1 cut(s)	669
AlwI	GGATC	2 cut(s)	517, 631
AoxI	GGCC	1 cut(s)	493
ApaLI	GTGCAC	1 cut(s)	669
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	487
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	2 cut(s)	160, 548
AvaII	GGWCC	1 cut(s)	464
BaeGI	GKGCMC	1 cut(s)	673
BalI	TGGCCA	1 cut(s)	495
Bbv12I	GWGCWC	2 cut(s)	277, 673
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	4 cut(s)	194, 389, 545, 623
BcgI	CGANNNNNNTGC	2 cut(s)	261, 295
BciT130I	CCWGG	1 cut(s)	468
BciVI	GTATCC	1 cut(s)	627
BfaI	CTAG	1 cut(s)	540
BfuI	GTATCC	1 cut(s)	627
BisI	GCNGC	2 cut(s)	24, 27
BlsI	GCNGC	2 cut(s)	25, 28
Bme1390I	CCNGG	1 cut(s)	468
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmrFI	CCNGG	1 cut(s)	468
BmrI	ACTGGG	1 cut(s)	294
BmuI	ACTGGG	1 cut(s)	294
Bsa29I	ATCGAT	3 cut(s)	79, 198, 413
Bse1I	ACTGG	2 cut(s)	289, 466
Bse3DI	GCAATG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	468
BseCI	ATCGAT	3 cut(s)	79, 198, 413
BseGI	GGATG	2 cut(s)	556, 634
BseMI	GCAATG	1 cut(s)	94
BseNI	ACTGG	2 cut(s)	289, 466
BseSI	GKGCMC	1 cut(s)	673
BseXI	GCAGC	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	356
BsgI	GTGCAG	1 cut(s)	305
BshFI	GGCC	1 cut(s)	495
BshVI	ATCGAT	3 cut(s)	79, 198, 413
BsiHKAI	GWGCWC	2 cut(s)	277, 673
BsnI	GGCC	1 cut(s)	495
Bsp1286I	GDGCHC	2 cut(s)	277, 673
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	3 cut(s)	154, 509, 623
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	495
BspDI	ATCGAT	3 cut(s)	79, 198, 413
BspPI	GGATC	2 cut(s)	517, 631
BsrDI	GCAATG	1 cut(s)	94
BsrGI	TGTACA	1 cut(s)	600
BsrI	ACTGG	2 cut(s)	289, 466
BssMI	GATC	3 cut(s)	154, 509, 623
Bst2UI	CCWGG	1 cut(s)	468
Bst4CI	ACNGT	4 cut(s)	247, 516, 532, 665
Bst6I	CTCTTC	1 cut(s)	394
BstAUI	TGTACA	1 cut(s)	600
BstDEI	CTNAG	1 cut(s)	639
BstEII	GGTNACC	1 cut(s)	554
BstF5I	GGATG	2 cut(s)	556, 634
BstKTI	GATC	3 cut(s)	157, 512, 626
BstMBI	GATC	3 cut(s)	154, 509, 623
BstNI	CCWGG	1 cut(s)	468
BstPI	GGTNACC	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	466
BstSLI	GKGCMC	1 cut(s)	673
BstV1I	GCAGC	1 cut(s)	38
BstXI	CCANNNNNNTGG	1 cut(s)	13
Bsu15I	ATCGAT	3 cut(s)	79, 198, 413
BsuI	GTATCC	1 cut(s)	627
BsuRI	GGCC	1 cut(s)	495
BsuTUI	ATCGAT	3 cut(s)	79, 198, 413
BtgZI	GCGATG	1 cut(s)	408
BtsCI	GGATG	2 cut(s)	556, 634
BtsIMutI	CAGTG	3 cut(s)	282, 459, 670
Cfr13I	GGNCC	1 cut(s)	464
ClaI	ATCGAT	3 cut(s)	79, 198, 413
CsiI	ACCWGGT	1 cut(s)	466
Csp6I	GTAC	1 cut(s)	601
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviAII	CATG	2 cut(s)	226, 560
CviJI	RGCY	5 cut(s)	29, 109, 360, 495, 543
CviKI_1	RGCY	5 cut(s)	29, 109, 360, 495, 543
CviQI	GTAC	1 cut(s)	601
DdeI	CTNAG	1 cut(s)	639
DpnI	GATC	3 cut(s)	156, 511, 625
DpnII	GATC	3 cut(s)	154, 509, 623
EaeI	YGGCCR	1 cut(s)	493
Eam1104I	CTCTTC	1 cut(s)	394
EarI	CTCTTC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	464
Eco91I	GGTNACC	1 cut(s)	554
EcoO65I	GGTNACC	1 cut(s)	554
EcoRII	CCWGG	1 cut(s)	466
FaeI	CATG	2 cut(s)	229, 563
FatI	CATG	2 cut(s)	225, 559
Fnu4HI	GCNGC	2 cut(s)	24, 27
FokI	GGATG	2 cut(s)	563, 641
Fsp4HI	GCNGC	2 cut(s)	24, 27
FspBI	CTAG	1 cut(s)	540
GluI	GCNGC	2 cut(s)	24, 27
GsaI	CCCAGC	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	495
Hin1II	CATG	2 cut(s)	229, 563
HinfI	GANTC	3 cut(s)	76, 367, 410
HphI	GGTGA	2 cut(s)	160, 548
Hpy166II	GTNNAC	2 cut(s)	601, 671
Hpy188I	TCNGA	4 cut(s)	75, 106, 628, 678
Hpy188III	TCNNGA	2 cut(s)	158, 585
Hpy8I	GTNNAC	2 cut(s)	601, 671
HpyAV	CCTTC	2 cut(s)	3, 286
HpyCH4III	ACNGT	4 cut(s)	247, 516, 532, 665
HpyCH4IV	ACGT	1 cut(s)	594
HpyCH4V	TGCA	4 cut(s)	282, 322, 434, 671
HpyF3I	CTNAG	1 cut(s)	639
HpySE526I	ACGT	1 cut(s)	594
Hsp92II	CATG	2 cut(s)	229, 563
Kzo9I	GATC	3 cut(s)	154, 509, 623
Lsp1109I	GCAGC	1 cut(s)	38
MabI	ACCWGGT	1 cut(s)	466
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	1 cut(s)	594
MaeIII	GTNAC	2 cut(s)	166, 554
MalI	GATC	3 cut(s)	156, 511, 625
MboI	GATC	3 cut(s)	154, 509, 623
MboII	GAAGA	3 cut(s)	175, 411, 511
MhlI	GDGCHC	2 cut(s)	277, 673
MlsI	TGGCCA	1 cut(s)	495
MluCI	AATT	3 cut(s)	297, 348, 487
MluNI	TGGCCA	1 cut(s)	495
MmeI	TCCRAC	1 cut(s)	528
MnlI	CCTC	7 cut(s)	128, 136, 327, 368, 395, 614, 640
Mox20I	TGGCCA	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	495
MslI	CAYNNNNRTG	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	495
MspR9I	CCNGG	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	468
NdeII	GATC	3 cut(s)	154, 509, 623
NlaIII	CATG	2 cut(s)	229, 563
NmuCI	GTSAC	2 cut(s)	166, 554
PfeI	GAWTC	3 cut(s)	76, 367, 410
PkrI	GCNGC	2 cut(s)	25, 28
Psp6I	CCWGG	1 cut(s)	466
PspEI	GGTNACC	1 cut(s)	554
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	466
PspPI	GGNCC	1 cut(s)	464
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
RseI	CAYNNNNRTG	1 cut(s)	224
SatI	GCNGC	2 cut(s)	24, 27
Sau3AI	GATC	3 cut(s)	154, 509, 623
Sau96I	GGNCC	1 cut(s)	464
ScrFI	CCNGG	1 cut(s)	468
SduI	GDGCHC	2 cut(s)	277, 673
SexAI	ACCWGGT	1 cut(s)	466
SinI	GGWCC	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	3 cut(s)	297, 348, 487
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	540
StyD4I	CCNGG	1 cut(s)	466
TaaI	ACNGT	4 cut(s)	247, 516, 532, 665
TaiI	ACGT	1 cut(s)	597
TaqI	TCGA	6 cut(s)	79, 186, 192, 198, 271, 413
TasI	AATT	3 cut(s)	297, 348, 487
TatI	WGTACW	1 cut(s)	600
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	3 cut(s)	76, 367, 410
TscAI	CASTG	3 cut(s)	289, 466, 670
TseFI	GTSAC	2 cut(s)	166, 554
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	2 cut(s)	166, 554
TspDTI	ATGAA	4 cut(s)	326, 332, 453, 511
TspRI	CASTG	3 cut(s)	289, 466, 670
VneI	GTGCAC	1 cut(s)	669
VpaK11BI	GGWCC	1 cut(s)	464
XapI	RAATTY	1 cut(s)	487
XcmI	CCANNNNNNNNNTGG	2 cut(s)	503, 566
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.