Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Forward (+)

4728747 .. 4731377

Gene Structure 2631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g06130.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCTAGAACGACGTTGTTGCTGCTCTGTACCCTCGTCCTCTTCGGAACCCTAGCTCTCATTGAGGCAAAGACGTCGAAGGAGATCGATCTGAAGGAAGTGACCCACAAGGTTTACTTTGATGTCGAGATATCTGGAAAGCCTGCTGGACAGGTTGTGATCGGTCTCTTCGGGAAGGCGGTTCCCAAGACTGCAGAGAATTTTCGAGCTCTTTGCACAGGGGAGAAAGGTGTTGGAAAGAGTGGAAAACCTCTCCATTTCAAGGGTAGCGAATTCCACAGGATTATACCCAGTTTCATGATCCAAGGAGGTGATTTCACACTAGGCGATGGAAGAGGTGGAGAATCAATTTACGGAGAGAAGTTCGCTGATGAGAATTTCATGCTAAAGCATACCGGTCCAGGGCTTTTGTCAATGGCAAATGCTGGTCCCGACACCAATGGTTCACAATTCTTCATCACAACTGTGAAGACTAAATGGTTGGATGGCAAACATGTTGTATTCGGAAAGGTGCTGTCCGGAATGGATGTGGTTTACAAGATTGAAGCTGAAGGAAATCAGAGTGGCACACCCAAGAGCAAAGTCGTAATTGCCGACAGCGGTGAACTTCCTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016018 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022622 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0055044 GO:0071704 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

206

Amino Acids

21.97

Weight (kDa)

8.44

Isoelectric Point (pI)

13.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	77
AccIII	TCCGGA	1 cut(s)	518
AciI	CCGC	2 cut(s)	179, 600
AclWI	GGATC	1 cut(s)	295
AcsI	RAATTY	3 cut(s)	199, 272, 376
AcuI	CTGAAG	2 cut(s)	113, 570
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	2 cut(s)	262, 402
AflIII	ACRYGT	1 cut(s)	493
AgeI	ACCGGT	1 cut(s)	395
AgsI	TTSAA	2 cut(s)	262, 545
AjnI	CCWGG	1 cut(s)	400
AleI	CACNNNNGTG	1 cut(s)	464
AluBI	AGCT	3 cut(s)	56, 209, 548
AluI	AGCT	3 cut(s)	56, 209, 548
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	295
Aor13HI	TCCGGA	1 cut(s)	518
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	3 cut(s)	199, 272, 376
AsiGI	ACCGGT	1 cut(s)	395
AspS9I	GGNCC	2 cut(s)	398, 428
AsuHPI	GGTGA	2 cut(s)	323, 614
AvaII	GGWCC	2 cut(s)	398, 428
BanII	GRGCYC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	9
BccI	CCATC	2 cut(s)	323, 479
BcgI	CGANNNNNNTGC	5 cut(s)	35, 57, 91, 195, 229
BciT130I	CCWGG	1 cut(s)	402
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	4 cut(s)	6, 53, 323, 616
BfmI	CTRYAG	1 cut(s)	192
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	402
Bme18I	GGWCC	2 cut(s)	398, 428
BmgT120I	GGNCC	2 cut(s)	398, 428
BmiI	GGNNCC	3 cut(s)	49, 183, 430
BmrFI	CCNGG	1 cut(s)	402
BmrI	ACTGGG	1 cut(s)	285
BmuI	ACTGGG	1 cut(s)	285
BpiI	GAAGAC	1 cut(s)	476
Bsa29I	ATCGAT	1 cut(s)	87
BsaHI	GRCGYC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	304, 401
BsaWI	WCCGGW	2 cut(s)	395, 518
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 402
Bse118I	RCCGGY	1 cut(s)	395
Bse1I	ACTGG	1 cut(s)	291
BseAI	TCCGGA	1 cut(s)	518
BseBI	CCWGG	1 cut(s)	402
BseCI	ATCGAT	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	304, 401
BseGI	GGATG	2 cut(s)	490, 532
BseLI	CCNNNNNNNGG	2 cut(s)	262, 402
BseNI	ACTGG	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	9
BshTI	ACCGGT	1 cut(s)	395
BshVI	ATCGAT	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	2 cut(s)	396, 519
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	2 cut(s)	262, 402
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	414
Bso31I	GGTCTC	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp13I	TCCGGA	1 cut(s)	518
Bsp143I	GATC	4 cut(s)	84, 88, 159, 300
BspACI	CCGC	2 cut(s)	179, 600
BspDI	ATCGAT	1 cut(s)	87
BspEI	TCCGGA	1 cut(s)	518
BspHI	TCATGA	1 cut(s)	297
BspLI	GGNNCC	3 cut(s)	49, 183, 430
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	1 cut(s)	295
BspTNI	GGTCTC	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	291
BssAI	RCCGGY	1 cut(s)	395
BssECI	CCNNGG	2 cut(s)	304, 401
BssMI	GATC	4 cut(s)	84, 88, 159, 300
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	3 cut(s)	47, 173, 328
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	490, 532
BstKTI	GATC	4 cut(s)	87, 91, 162, 303
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	4 cut(s)	84, 88, 159, 300
BstNI	CCWGG	1 cut(s)	402
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	9
BstV2I	GAAGAC	1 cut(s)	476
Bsu15I	ATCGAT	1 cut(s)	87
BsuTUI	ATCGAT	1 cut(s)	87
BtgZI	GCGATG	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	490, 532
Cac8I	GCNNGC	1 cut(s)	144
CciI	TCATGA	1 cut(s)	297
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	2 cut(s)	398, 428
ClaI	ATCGAT	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	30
CspAI	ACCGGT	1 cut(s)	395
CviAII	CATG	3 cut(s)	298, 382, 494
CviJI	RGCY	6 cut(s)	5, 56, 142, 209, 406, 548
CviKI_1	RGCY	6 cut(s)	5, 56, 142, 209, 406, 548
CviQI	GTAC	1 cut(s)	30
DpnI	GATC	4 cut(s)	86, 90, 161, 302
DpnII	GATC	4 cut(s)	84, 88, 159, 300
Eam1104I	CTCTTC	3 cut(s)	47, 173, 328
EarI	CTCTTC	3 cut(s)	47, 173, 328
Ecl136II	GAGCTC	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	170
Eco32I	GATATC	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	398, 428
Eco53kI	GAGCTC	1 cut(s)	209
Eco57I	CTGAAG	2 cut(s)	113, 570
EcoICRI	GAGCTC	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	400
EcoRV	GATATC	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	3 cut(s)	301, 385, 497
FaiI	YATR	5 cut(s)	287, 299, 383, 393, 495
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	3 cut(s)	297, 381, 493
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	2 cut(s)	497, 539
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	1 cut(s)	23
FspBI	CTAG	4 cut(s)	6, 53, 323, 616
GluI	GCNGC	1 cut(s)	23
HapII	CCGG	2 cut(s)	396, 519
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	301, 385, 497
HinfI	GANTC	1 cut(s)	344
HpaII	CCGG	2 cut(s)	396, 519
HphI	GGTGA	2 cut(s)	323, 614
Hpy166II	GTNNAC	4 cut(s)	115, 446, 535, 605
Hpy188I	TCNGA	4 cut(s)	47, 93, 506, 561
Hpy188III	TCNNGA	6 cut(s)	127, 135, 172, 298, 431, 519
Hpy8I	GTNNAC	4 cut(s)	115, 446, 535, 605
Hpy99I	CGWCG	2 cut(s)	16, 79
HpyAV	CCTTC	4 cut(s)	73, 88, 169, 545
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	2 cut(s)	14, 74
HpyCH4V	TGCA	2 cut(s)	194, 216
HpySE526I	ACGT	2 cut(s)	14, 74
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	3 cut(s)	301, 385, 497
Kpn2I	TCCGGA	1 cut(s)	518
Kzo9I	GATC	4 cut(s)	84, 88, 159, 300
Lsp1109I	GCAGC	1 cut(s)	9
MaeI	CTAG	4 cut(s)	6, 53, 323, 616
MaeII	ACGT	2 cut(s)	14, 74
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	4 cut(s)	86, 90, 161, 302
MboI	GATC	4 cut(s)	84, 88, 159, 300
MboII	GAAGA	5 cut(s)	34, 160, 345, 445, 481
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	6 cut(s)	199, 272, 348, 376, 449, 588
MmeI	TCCRAC	2 cut(s)	214, 462
MnlI	CCTC	6 cut(s)	44, 50, 58, 261, 302, 329
MroI	TCCGGA	1 cut(s)	518
MslI	CAYNNNNRTG	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	600
MspI	CCGG	2 cut(s)	396, 519
MspR9I	CCNGG	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	402
NdeII	GATC	4 cut(s)	84, 88, 159, 300
NlaIII	CATG	3 cut(s)	301, 385, 497
NlaIV	GGNNCC	3 cut(s)	49, 183, 430
NmuCI	GTSAC	1 cut(s)	100
NspI	RCATGY	1 cut(s)	497
OliI	CACNNNNGTG	1 cut(s)	464
PagI	TCATGA	1 cut(s)	297
PciI	ACATGT	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	1 cut(s)	591
PfeI	GAWTC	1 cut(s)	344
PinAI	ACCGGT	1 cut(s)	395
PkrI	GCNGC	1 cut(s)	24
PscI	ACATGT	1 cut(s)	493
Psp124BI	GAGCTC	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	3 cut(s)	49, 183, 430
PspPI	GGNCC	2 cut(s)	398, 428
PstI	CTGCAG	1 cut(s)	196
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	464
SacI	GAGCTC	1 cut(s)	211
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	4 cut(s)	84, 88, 159, 300
Sau96I	GGNCC	2 cut(s)	398, 428
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	211
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	2 cut(s)	398, 428
SmiMI	CAYNNNNRTG	1 cut(s)	464
Sse9I	AATT	6 cut(s)	199, 272, 348, 376, 449, 588
SsiI	CCGC	2 cut(s)	179, 600
SspMI	CTAG	4 cut(s)	6, 53, 323, 616
SstI	GAGCTC	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	400
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	2 cut(s)	17, 77
TaqI	TCGA	4 cut(s)	77, 87, 126, 205
TaqII	GACCGA	1 cut(s)	152
TasI	AATT	6 cut(s)	199, 272, 348, 376, 449, 588
TfiI	GAWTC	1 cut(s)	344
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	286, 370, 445
TspGWI	ACGGA	1 cut(s)	369
VpaK11BI	GGWCC	2 cut(s)	398, 428
XapI	RAATTY	3 cut(s)	199, 272, 376
XceI	RCATGY	1 cut(s)	497
XspI	CTAG	4 cut(s)	6, 53, 323, 616
ZraI	GACGTC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.