Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Reverse (-)

22220925 .. 22222910

Gene Structure 1986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20020.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCGACCGGAAGAAGGCTGGTTTCGGCGGCGGCTCTCTTGTGGGTCCTACTCCTCTTCGGCACTTTGGCCTTCATCCTGACTCGACTCGGCGACGACGGAGCTCTGAACAAGCCGAATGTTGTCAAAAGCGAGCTCCATGAGGAGAACGATTTGGAGCAAGTGACTCACAAAGTGTACTTCGACATTGAAATTAATGGGAAACCCATTGGTCGCATTGTGATGGGTCTCTTTGGAAAAACAGTTCCTAAAACCATAGATTTTGTGTTTTCGAGTTTAATGAGTCCTCCTCGCTTTTCAGGGGAAAAAGGAACTGGAACGAGTAGGAAGCCTCTTCACTACAAAGGCAGTACATTTCATAGGATTATCCCCACCTTTATGATACAGGGAGGTGATTTCACCCTCGGTGATGGACGAGGTGGAGAATCAATATACGGTGATAAGTTTGCAGATGAAAACTTCAAACTACGGCACACTGGGCCAGGTGTTCTTTCTATGGCAAATGCTGGGCCAGACACCAACGGATCGCAATTCTTCATCACAACAGTCAAAACCGGTTGGTTGGATGGGCGGCATGTCGTATTTGGCAAGGTGCTTTCCGGGATGGACGTAGTGTCCAGAGTCGAAGAAGTAGGAGGCAAGGATGGGGTACCTAGGAGCAAGGTTGTCATCACCAACAGTGGCGAACTTCCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

233

Amino Acids

25.16

Weight (kDa)

9.1

Isoelectric Point (pI)

26.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	649
AccB1I	GGYRCC	1 cut(s)	649
AciI	CCGC	3 cut(s)	29, 32, 571
AclWI	GGATC	1 cut(s)	532
AdeI	CACNNNGTG	1 cut(s)	175
AfaI	GTAC	3 cut(s)	179, 352, 651
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgeI	ACCGGT	1 cut(s)	554
AgsI	TTSAA	2 cut(s)	191, 463
AhdI	GACNNNNNGTC	1 cut(s)	613
AjnI	CCWGG	1 cut(s)	481
AloI	GAACNNNNNNTCC	2 cut(s)	228, 260
AluBI	AGCT	2 cut(s)	104, 136
AluI	AGCT	2 cut(s)	104, 136
Alw21I	GWGCWC	2 cut(s)	106, 138
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	532
AoxI	GGCC	3 cut(s)	69, 479, 509
AseI	ATTAAT	1 cut(s)	195
AsiGI	ACCGGT	1 cut(s)	554
Asp718I	GGTACC	1 cut(s)	649
AspA2I	CCTAGG	1 cut(s)	653
AspS9I	GGNCC	3 cut(s)	46, 479, 509
AsuC2I	CCSGG	1 cut(s)	601
AsuHPI	GGTGA	5 cut(s)	391, 404, 419, 449, 664
AvaII	GGWCC	1 cut(s)	46
AvrII	CCTAGG	1 cut(s)	653
BanI	GGYRCC	1 cut(s)	649
BanII	GRGCYC	2 cut(s)	106, 138
Bbv12I	GWGCWC	2 cut(s)	106, 138
BccI	CCATC	5 cut(s)	217, 404, 560, 598, 638
BceAI	ACGGC	1 cut(s)	485
BciT130I	CCWGG	1 cut(s)	483
BcnI	CCSGG	1 cut(s)	601
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	654
BisI	GCNGC	3 cut(s)	30, 33, 572
BlnI	CCTAGG	1 cut(s)	653
BlsI	GCNGC	3 cut(s)	31, 34, 573
Bme1390I	CCNGG	2 cut(s)	483, 601
Bme18I	GGWCC	1 cut(s)	46
BmeRI	GACNNNNNGTC	1 cut(s)	613
BmgT120I	GGNCC	3 cut(s)	46, 479, 509
BmiI	GGNNCC	2 cut(s)	47, 651
BmrFI	CCNGG	2 cut(s)	483, 601
BmrI	ACTGGG	1 cut(s)	486
BmuI	ACTGGG	1 cut(s)	486
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
BpuMI	CCSGG	1 cut(s)	601
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	403, 653
BsaWI	WCCGGW	2 cut(s)	8, 554
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse118I	RCCGGY	1 cut(s)	554
Bse1I	ACTGG	2 cut(s)	319, 481
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	403, 653
BseGI	GGATG	4 cut(s)	75, 571, 609, 649
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseNI	ACTGG	2 cut(s)	319, 481
BseRI	GAGGAG	3 cut(s)	44, 158, 279
BseYI	CCCAGC	1 cut(s)	506
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	3 cut(s)	71, 481, 511
BshNI	GGYRCC	1 cut(s)	649
BshTI	ACCGGT	1 cut(s)	554
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	2 cut(s)	106, 138
BsiSI	CCGG	3 cut(s)	9, 555, 600
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	233
BsnI	GGCC	3 cut(s)	71, 481, 511
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	106, 138
Bsp143I	GATC	1 cut(s)	524
BspACI	CCGC	3 cut(s)	29, 32, 571
BspANI	GGCC	3 cut(s)	71, 481, 511
BspLI	GGNNCC	2 cut(s)	47, 651
BspPI	GGATC	1 cut(s)	532
BspT107I	GGYRCC	1 cut(s)	649
BspTNI	GGTCTC	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	554
BsrI	ACTGG	2 cut(s)	319, 481
BssAI	RCCGGY	1 cut(s)	554
BssECI	CCNNGG	2 cut(s)	403, 653
BssMI	GATC	1 cut(s)	524
BssT1I	CCWWGG	1 cut(s)	653
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	4 cut(s)	244, 437, 547, 680
Bst6I	CTCTTC	2 cut(s)	62, 339
BstC8I	GCNNGC	1 cut(s)	134
BstF5I	GGATG	4 cut(s)	75, 571, 609, 649
BstKTI	GATC	1 cut(s)	527
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	1 cut(s)	524
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	478
BstNI	CCWGG	1 cut(s)	483
BstNSI	RCATGY	1 cut(s)	578
BstSCI	CCNGG	2 cut(s)	481, 599
BsuRI	GGCC	3 cut(s)	71, 481, 511
BtsCI	GGATG	4 cut(s)	75, 571, 609, 649
BtsIMutI	CAGTG	2 cut(s)	474, 685
Cac8I	GCNNGC	1 cut(s)	134
Cfr10I	RCCGGY	1 cut(s)	554
Cfr13I	GGNCC	3 cut(s)	46, 479, 509
Csp6I	GTAC	3 cut(s)	178, 351, 650
CspAI	ACCGGT	1 cut(s)	554
CviAII	CATG	2 cut(s)	140, 575
CviJI	RGCY	9 cut(s)	19, 35, 71, 104, 115, 136, 331, 481, 511
CviKI_1	RGCY	9 cut(s)	19, 35, 71, 104, 115, 136, 331, 481, 511
CviQI	GTAC	3 cut(s)	178, 351, 650
DpnI	GATC	1 cut(s)	526
DpnII	GATC	1 cut(s)	524
DraIII	CACNNNGTG	1 cut(s)	175
DriI	GACNNNNNGTC	1 cut(s)	613
Eam1104I	CTCTTC	2 cut(s)	62, 339
Eam1105I	GACNNNNNGTC	1 cut(s)	613
EarI	CTCTTC	2 cut(s)	62, 339
Ecl136II	GAGCTC	2 cut(s)	104, 136
Eco130I	CCWWGG	1 cut(s)	653
Eco24I	GRGCYC	2 cut(s)	106, 138
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	46
Eco53kI	GAGCTC	2 cut(s)	104, 136
EcoICRI	GAGCTC	2 cut(s)	104, 136
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	653
EcoT38I	GRGCYC	2 cut(s)	106, 138
ErhI	CCWWGG	1 cut(s)	653
FaeI	CATG	2 cut(s)	143, 578
FaiI	YATR	7 cut(s)	141, 257, 360, 380, 433, 497, 576
FatI	CATG	2 cut(s)	139, 574
Fnu4HI	GCNGC	3 cut(s)	30, 33, 572
FokI	GGATG	4 cut(s)	62, 578, 616, 656
FriOI	GRGCYC	2 cut(s)	106, 138
Fsp4HI	GCNGC	3 cut(s)	30, 33, 572
FspBI	CTAG	1 cut(s)	654
GluI	GCNGC	3 cut(s)	30, 33, 572
GsaI	CCCAGC	1 cut(s)	510
HaeIII	GGCC	3 cut(s)	71, 481, 511
HapII	CCGG	3 cut(s)	9, 555, 600
Hin1II	CATG	2 cut(s)	143, 578
HinfI	GANTC	6 cut(s)	82, 87, 166, 283, 425, 621
HpaII	CCGG	3 cut(s)	9, 555, 600
HphI	GGTGA	5 cut(s)	391, 404, 419, 449, 664
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	2 cut(s)	79, 618
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	2 cut(s)	98, 101
HpyAV	CCTTC	2 cut(s)	9, 82
HpyCH4III	ACNGT	4 cut(s)	244, 437, 547, 680
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	1 cut(s)	449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	478
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	2 cut(s)	143, 578
KpnI	GGTACC	1 cut(s)	653
Kzo9I	GATC	1 cut(s)	524
LmnI	GCTCC	4 cut(s)	101, 141, 157, 657
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	526
MboI	GATC	1 cut(s)	524
MboII	GAAGA	5 cut(s)	24, 49, 326, 526, 638
MhlI	GDGCHC	2 cut(s)	106, 138
MluCI	AATT	2 cut(s)	192, 530
MlyI	GAGTC	5 cut(s)	76, 81, 160, 292, 630
MmeI	TCCRAC	1 cut(s)	543
MnlI	CCTC	9 cut(s)	65, 136, 297, 300, 342, 383, 410, 413, 629
MseI	TTAA	2 cut(s)	195, 278
MslI	CAYNNNNRTG	2 cut(s)	221, 377
MspI	CCGG	3 cut(s)	9, 555, 600
MspR9I	CCNGG	2 cut(s)	483, 601
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	1 cut(s)	478
NciI	CCSGG	1 cut(s)	601
NdeII	GATC	1 cut(s)	524
NlaIII	CATG	2 cut(s)	143, 578
NlaIV	GGNNCC	2 cut(s)	47, 651
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	163
NspI	RCATGY	1 cut(s)	578
PfeI	GAWTC	1 cut(s)	425
PfoI	TCCNGGA	1 cut(s)	599
PinAI	ACCGGT	1 cut(s)	554
PkrI	GCNGC	3 cut(s)	31, 34, 573
PleI	GAGTC	5 cut(s)	76, 81, 160, 291, 629
PpsI	GAGTC	5 cut(s)	76, 81, 160, 291, 629
PpuMI	RGGWCCY	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	195
Psp124BI	GAGCTC	2 cut(s)	106, 138
Psp5II	RGGWCCY	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	481
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	2 cut(s)	47, 651
PspPI	GGNCC	3 cut(s)	46, 479, 509
PspPPI	RGGWCCY	1 cut(s)	46
RsaI	GTAC	3 cut(s)	179, 352, 651
RsaNI	GTAC	3 cut(s)	178, 351, 650
RseI	CAYNNNNRTG	2 cut(s)	221, 377
SacI	GAGCTC	2 cut(s)	106, 138
SaqAI	TTAA	2 cut(s)	195, 278
SatI	GCNGC	3 cut(s)	30, 33, 572
Sau3AI	GATC	1 cut(s)	524
Sau96I	GGNCC	3 cut(s)	46, 479, 509
SchI	GAGTC	5 cut(s)	76, 81, 160, 292, 630
ScrFI	CCNGG	2 cut(s)	483, 601
SduI	GDGCHC	2 cut(s)	106, 138
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	2 cut(s)	221, 377
Sse9I	AATT	2 cut(s)	192, 530
SsiI	CCGC	3 cut(s)	29, 32, 571
SspMI	CTAG	1 cut(s)	654
SstI	GAGCTC	2 cut(s)	106, 138
StyD4I	CCNGG	2 cut(s)	481, 599
StyI	CCWWGG	1 cut(s)	653
TaaI	ACNGT	4 cut(s)	244, 437, 547, 680
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	4 cut(s)	85, 183, 272, 624
TasI	AATT	2 cut(s)	192, 530
TatI	WGTACW	2 cut(s)	177, 350
TauI	GCSGC	3 cut(s)	32, 35, 574
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	2 cut(s)	195, 278
Tru9I	TTAA	2 cut(s)	195, 278
TscAI	CASTG	2 cut(s)	481, 685
TseFI	GTSAC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	4 cut(s)	64, 347, 468, 526
TspGWI	ACGGA	2 cut(s)	114, 537
TspRI	CASTG	2 cut(s)	481, 685
VpaK11BI	GGWCC	1 cut(s)	46
VspI	ATTAAT	1 cut(s)	195
XceI	RCATGY	1 cut(s)	578
XmaJI	CCTAGG	1 cut(s)	653
XspI	CTAG	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.