Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Reverse (-)

26117518 .. 26119871

Gene Structure 2354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1152800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGACGACGGGAAGAAGGCTGTTTTCGGCGGCTCTTTTGTGGGTCCTACTCCTCTTCGGCGCCTTAGTATTCATCCTGACCCGACTCGGCGGCGACGGAGCTCTGAACGAGCCGAATGTTGTCAAAAGCGAGCTCCGTGAGGAAAGCGATTTGGAGCAAGTGACTCACAAAGGTTACTTCGATATCGAAATAAATGGAAAACCCTTTGGTCGCATTGTGATGGGTCTCTTTGGAAAAACAGTCCCTAAAACCACAGAGAATTTCCGAGCCCTTTGTACGGGGGAAAAAGGAACTGGAACAAGTAGGAAGCCTCTTCACTACAAGGGCAGTACATTTCACAGGATTATTCCCAGCTTTATGATACAGGGAGGTGATTTCACTCTCGGTGATGGGCGAGGTGGTGAGTCAATTTACGGTGATAAGTTTGCAGATGAAAACTTCAAACTACAGCACACAGGGTCAGGTATTCTTTCTATGGCAAATGCTGGGCCAGACACCAATGGATCACAATTCTTCATTACAACAGTCAAAACTGATTGGTTGGATGGGCGGCACGTCGTATTTGGCAAGGTGATTTCCGGGATGGACGTAGTGTACAAAGTCGAAGAAGTTGGAGACGCGAACGGGGTACCTAGGAGCAAGGTTGTCATCACCGACAGCGGCGAACTTCCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

226

Amino Acids

24.48

Weight (kDa)

6.53

Isoelectric Point (pI)

25.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	59 - 220	5e-48	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	628
AccB1I	GGYRCC	2 cut(s)	59, 628
AccII	CGCG	1 cut(s)	620
AciI	CCGC	4 cut(s)	29, 90, 550, 660
AclWI	GGATC	1 cut(s)	511
AcsI	RAATTY	1 cut(s)	259
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	4 cut(s)	277, 331, 596, 630
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgsI	TTSAA	1 cut(s)	442
AjiI	CACGTC	1 cut(s)	556
AluBI	AGCT	3 cut(s)	101, 133, 354
AluI	AGCT	3 cut(s)	101, 133, 354
Alw21I	GWGCWC	2 cut(s)	103, 135
Alw26I	GTCTC	2 cut(s)	230, 609
AlwI	GGATC	1 cut(s)	511
AoxI	GGCC	1 cut(s)	488
ApoI	RAATTY	1 cut(s)	259
Asp718I	GGTACC	1 cut(s)	628
AspA2I	CCTAGG	1 cut(s)	632
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	43, 488
AsuC2I	CCSGG	1 cut(s)	580
AsuHPI	GGTGA	6 cut(s)	383, 398, 413, 428, 583, 643
AvaII	GGWCC	1 cut(s)	43
AvrII	CCTAGG	1 cut(s)	632
BanI	GGYRCC	2 cut(s)	59, 628
BanII	GRGCYC	3 cut(s)	103, 135, 271
Bbv12I	GWGCWC	2 cut(s)	103, 135
BccI	CCATC	4 cut(s)	214, 383, 539, 577
BcnI	CCSGG	1 cut(s)	580
BcoDI	GTCTC	2 cut(s)	230, 609
BfaI	CTAG	1 cut(s)	633
BfmI	CTRYAG	1 cut(s)	446
BfoI	RGCGCY	1 cut(s)	63
BisI	GCNGC	4 cut(s)	30, 91, 551, 661
BlnI	CCTAGG	1 cut(s)	632
BlsI	GCNGC	4 cut(s)	31, 92, 552, 662
Bme1390I	CCNGG	1 cut(s)	580
Bme18I	GGWCC	1 cut(s)	43
BmgBI	CACGTC	1 cut(s)	556
BmgT120I	GGNCC	2 cut(s)	43, 488
BmiI	GGNNCC	3 cut(s)	44, 61, 630
BmrFI	CCNGG	1 cut(s)	580
BpuMI	CCSGG	1 cut(s)	580
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	632
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	632
BseGI	GGATG	3 cut(s)	72, 550, 588
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	41
BseYI	CCCAGC	2 cut(s)	350, 485
Bsh1236I	CGCG	1 cut(s)	620
BshFI	GGCC	1 cut(s)	490
BshNI	GGYRCC	2 cut(s)	59, 628
BsiHKAI	GWGCWC	2 cut(s)	103, 135
BsiSI	CCGG	1 cut(s)	579
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	2 cut(s)	230, 609
BsmBI	CGTCTC	1 cut(s)	609
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	490
Bso31I	GGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	3 cut(s)	103, 135, 271
Bsp1407I	TGTACA	1 cut(s)	594
Bsp143I	GATC	1 cut(s)	503
BspACI	CCGC	4 cut(s)	29, 90, 550, 660
BspANI	GGCC	1 cut(s)	490
BspFNI	CGCG	1 cut(s)	620
BspLI	GGNNCC	3 cut(s)	44, 61, 630
BspPI	GGATC	1 cut(s)	511
BspT107I	GGYRCC	2 cut(s)	59, 628
BspTNI	GGTCTC	1 cut(s)	230
BsrGI	TGTACA	1 cut(s)	594
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	632
BssMI	GATC	1 cut(s)	503
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	632
Bst4CI	ACNGT	3 cut(s)	241, 416, 526
Bst6I	CTCTTC	2 cut(s)	59, 318
BstACI	GRCGYC	1 cut(s)	60
BstAUI	TGTACA	1 cut(s)	594
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	64
BstF5I	GGATG	3 cut(s)	72, 550, 588
BstFNI	CGCG	1 cut(s)	620
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	1 cut(s)	506
BstMAI	GTCTC	2 cut(s)	230, 609
BstMBI	GATC	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	578
BstSFI	CTRYAG	1 cut(s)	446
BstUI	CGCG	1 cut(s)	620
BsuRI	GGCC	1 cut(s)	490
BtrI	CACGTC	1 cut(s)	556
BtsCI	GGATG	3 cut(s)	72, 550, 588
Cac8I	GCNNGC	1 cut(s)	131
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	43, 488
CseI	GACGC	1 cut(s)	626
Csp6I	GTAC	4 cut(s)	276, 330, 595, 629
CviJI	RGCY	9 cut(s)	19, 32, 101, 112, 133, 269, 310, 354, 490
CviKI_1	RGCY	9 cut(s)	19, 32, 101, 112, 133, 269, 310, 354, 490
CviQI	GTAC	4 cut(s)	276, 330, 595, 629
DdeI	CTNAG	1 cut(s)	64
DinI	GGCGCC	1 cut(s)	61
DpnI	GATC	1 cut(s)	505
DpnII	GATC	1 cut(s)	503
Eam1104I	CTCTTC	2 cut(s)	59, 318
EarI	CTCTTC	2 cut(s)	59, 318
Ecl136II	GAGCTC	2 cut(s)	101, 133
Eco130I	CCWWGG	1 cut(s)	632
Eco24I	GRGCYC	3 cut(s)	103, 135, 271
Eco31I	GGTCTC	1 cut(s)	230
Eco32I	GATATC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	43
Eco53kI	GAGCTC	2 cut(s)	101, 133
EcoICRI	GAGCTC	2 cut(s)	101, 133
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	632
EcoT38I	GRGCYC	3 cut(s)	103, 135, 271
EgeI	GGCGCC	1 cut(s)	61
EheI	GGCGCC	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	632
Esp3I	CGTCTC	1 cut(s)	609
FaiI	YATR	2 cut(s)	359, 476
FaqI	GGGAC	1 cut(s)	227
Fnu4HI	GCNGC	4 cut(s)	30, 91, 551, 661
FokI	GGATG	3 cut(s)	59, 557, 595
FriOI	GRGCYC	3 cut(s)	103, 135, 271
Fsp4HI	GCNGC	4 cut(s)	30, 91, 551, 661
FspBI	CTAG	1 cut(s)	633
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	4 cut(s)	30, 91, 551, 661
GsaI	CCCAGC	2 cut(s)	354, 489
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	1 cut(s)	579
HgaI	GACGC	1 cut(s)	626
HhaI	GCGC	1 cut(s)	62
Hin1I	GRCGYC	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HinfI	GANTC	3 cut(s)	84, 163, 404
HpaII	CCGG	1 cut(s)	579
HphI	GGTGA	6 cut(s)	383, 398, 413, 428, 583, 643
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	2 cut(s)	105, 266
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	595
Hpy99I	CGWCG	3 cut(s)	10, 98, 560
HpyAV	CCTTC	1 cut(s)	9
HpyCH4III	ACNGT	3 cut(s)	241, 416, 526
HpyCH4IV	ACGT	2 cut(s)	555, 588
HpyCH4V	TGCA	1 cut(s)	428
HpyF3I	CTNAG	1 cut(s)	64
HpySE526I	ACGT	2 cut(s)	555, 588
Hsp92I	GRCGYC	1 cut(s)	60
HspAI	GCGC	1 cut(s)	60
KasI	GGCGCC	1 cut(s)	59
KpnI	GGTACC	1 cut(s)	632
Kzo9I	GATC	1 cut(s)	503
LmnI	GCTCC	4 cut(s)	98, 138, 154, 636
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	2 cut(s)	555, 588
MaeIII	GTNAC	2 cut(s)	160, 173
MalI	GATC	1 cut(s)	505
MboI	GATC	1 cut(s)	503
MboII	GAAGA	5 cut(s)	24, 46, 305, 505, 617
MhlI	GDGCHC	3 cut(s)	103, 135, 271
MluCI	AATT	3 cut(s)	259, 408, 509
Mly113I	GGCGCC	1 cut(s)	60
MlyI	GAGTC	3 cut(s)	78, 157, 413
MmeI	TCCRAC	2 cut(s)	522, 592
MnlI	CCTC	5 cut(s)	62, 133, 321, 362, 389
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	660
MspI	CCGG	1 cut(s)	579
MspR9I	CCNGG	1 cut(s)	580
MvnI	CGCG	1 cut(s)	620
NarI	GGCGCC	1 cut(s)	60
NciI	CCSGG	1 cut(s)	580
NdeII	GATC	1 cut(s)	503
NlaIV	GGNNCC	3 cut(s)	44, 61, 630
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	160
PfoI	TCCNGGA	1 cut(s)	578
PkrI	GCNGC	4 cut(s)	31, 92, 552, 662
PleI	GAGTC	3 cut(s)	78, 157, 412
PluTI	GGCGCC	1 cut(s)	63
PpsI	GAGTC	3 cut(s)	78, 157, 412
PpuMI	RGGWCCY	1 cut(s)	43
Psp124BI	GAGCTC	2 cut(s)	103, 135
Psp5II	RGGWCCY	1 cut(s)	43
PspFI	CCCAGC	2 cut(s)	350, 485
PspN4I	GGNNCC	3 cut(s)	44, 61, 630
PspPI	GGNCC	2 cut(s)	43, 488
PspPPI	RGGWCCY	1 cut(s)	43
RsaI	GTAC	4 cut(s)	277, 331, 596, 630
RsaNI	GTAC	4 cut(s)	276, 330, 595, 629
RseI	CAYNNNNRTG	1 cut(s)	218
SacI	GAGCTC	2 cut(s)	103, 135
SatI	GCNGC	4 cut(s)	30, 91, 551, 661
Sau3AI	GATC	1 cut(s)	503
Sau96I	GGNCC	2 cut(s)	43, 488
SchI	GAGTC	3 cut(s)	78, 157, 413
ScrFI	CCNGG	1 cut(s)	580
SduI	GDGCHC	3 cut(s)	103, 135, 271
SfcI	CTRYAG	1 cut(s)	446
SfoI	GGCGCC	1 cut(s)	61
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	3 cut(s)	259, 408, 509
SsiI	CCGC	4 cut(s)	29, 90, 550, 660
SspDI	GGCGCC	1 cut(s)	59
SspMI	CTAG	1 cut(s)	633
SstI	GAGCTC	2 cut(s)	103, 135
StyD4I	CCNGG	1 cut(s)	578
StyI	CCWWGG	1 cut(s)	632
TaaI	ACNGT	3 cut(s)	241, 416, 526
TaiI	ACGT	2 cut(s)	558, 591
TaqI	TCGA	3 cut(s)	180, 186, 603
TasI	AATT	3 cut(s)	259, 408, 509
TatI	WGTACW	2 cut(s)	329, 594
TauI	GCSGC	4 cut(s)	32, 93, 553, 663
TseFI	GTSAC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	3 cut(s)	61, 447, 505
TspGWI	ACGGA	2 cut(s)	111, 125
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	1 cut(s)	259
XmaJI	CCTAGG	1 cut(s)	632
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.