Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Reverse (-)

16437708 .. 16439668

Gene Structure 1961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17040.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGACGACCGGAAGAAGGCTGTTTTCGGCGGCTGTTTTGTGGGTCCTTCTCCTCTTCGGCACCTTAGCATTCATCCTGACCCGATTCGGCGGCGACGGAGCTCTGAACGAGCCGAATGTTGTCAAAAGCGAGCTCCGTGAGGAAAGCGATTTGGAGCAAGTGACTCACAAAGTTTACTTCGATATCGAAATAAATGGAAAACCCATTGGTCGCATTGTGATGGGTCTCTTTGGAAAAACAGTCCCTAAAACCATAGAGAATTTCCGAGCGCTTTGCACGGGGGAAAAAGGAACTGGAACAAGTAGGAAGCCTCTTCACTACAAGGGCAGTACATTTCACAGGATTATTCCCAGCTTTATGATACAGGGAGGTGATTTCACTCTCGGTGATGGGCGAGGTGGTGAGTCAATTTACGGTGATAAGTTTGCAGATGAAAACTTCAAACTACAGCACACAGGGCCAGGTATTCTTTCTATGGCAAATGCTGGGCCAGACACCAATGGATCACAATTCTTCATTACAACAGTCAAAACTGGTTGGTTGGATGGGCGGCACGTTGTATTTGGCAAGGTGATTTCCGGGATGGACGTAGTGTACAAAGTCGAAGAAGTTGGAGACGCGAACGGGGTACCTAGGAGCAAGGTTGTCATCACCGACAGCGGCGAACTTCCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

226

Amino Acids

24.48

Weight (kDa)

6.98

Isoelectric Point (pI)

26.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	628
AccB1I	GGYRCC	2 cut(s)	59, 628
AccII	CGCG	1 cut(s)	620
AciI	CCGC	4 cut(s)	29, 90, 550, 660
AclWI	GGATC	1 cut(s)	511
AcsI	RAATTY	1 cut(s)	259
AfaI	GTAC	3 cut(s)	331, 596, 630
AfeI	AGCGCT	1 cut(s)	270
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgsI	TTSAA	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	3 cut(s)	101, 133, 354
AluI	AGCT	3 cut(s)	101, 133, 354
Alw21I	GWGCWC	2 cut(s)	103, 135
Alw26I	GTCTC	2 cut(s)	230, 609
AlwI	GGATC	1 cut(s)	511
Aor51HI	AGCGCT	1 cut(s)	270
AoxI	GGCC	2 cut(s)	458, 488
ApoI	RAATTY	1 cut(s)	259
Asp718I	GGTACC	1 cut(s)	628
AspA2I	CCTAGG	1 cut(s)	632
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	3 cut(s)	43, 458, 488
AsuC2I	CCSGG	1 cut(s)	580
AsuHPI	GGTGA	6 cut(s)	383, 398, 413, 428, 583, 643
AvaII	GGWCC	1 cut(s)	43
AvrII	CCTAGG	1 cut(s)	632
BanI	GGYRCC	2 cut(s)	59, 628
BanII	GRGCYC	2 cut(s)	103, 135
Bbv12I	GWGCWC	2 cut(s)	103, 135
BccI	CCATC	4 cut(s)	214, 383, 539, 577
BcgI	CGANNNNNNTGC	2 cut(s)	255, 289
BciT130I	CCWGG	1 cut(s)	462
BcnI	CCSGG	1 cut(s)	580
BcoDI	GTCTC	2 cut(s)	230, 609
BfaI	CTAG	1 cut(s)	633
BfmI	CTRYAG	1 cut(s)	446
BfoI	RGCGCY	1 cut(s)	272
BisI	GCNGC	4 cut(s)	30, 91, 551, 661
BlnI	CCTAGG	1 cut(s)	632
BlsI	GCNGC	4 cut(s)	31, 92, 552, 662
Bme1390I	CCNGG	2 cut(s)	462, 580
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	3 cut(s)	43, 458, 488
BmiI	GGNNCC	3 cut(s)	44, 61, 630
BmrFI	CCNGG	2 cut(s)	462, 580
Bpu10I	CCTNAGC	1 cut(s)	64
BpuMI	CCSGG	1 cut(s)	580
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	632
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse1I	ACTGG	2 cut(s)	298, 538
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	632
BseGI	GGATG	3 cut(s)	72, 550, 588
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseNI	ACTGG	2 cut(s)	298, 538
BseRI	GAGGAG	1 cut(s)	41
BseYI	CCCAGC	2 cut(s)	350, 485
Bsh1236I	CGCG	1 cut(s)	620
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	460, 490
BshNI	GGYRCC	2 cut(s)	59, 628
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	2 cut(s)	103, 135
BsiSI	CCGG	2 cut(s)	9, 579
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	2 cut(s)	230, 609
BsmBI	CGTCTC	1 cut(s)	609
BsmFI	GGGAC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	460, 490
Bso31I	GGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	2 cut(s)	103, 135
Bsp1407I	TGTACA	1 cut(s)	594
Bsp143I	GATC	1 cut(s)	503
BspACI	CCGC	4 cut(s)	29, 90, 550, 660
BspANI	GGCC	2 cut(s)	460, 490
BspFNI	CGCG	1 cut(s)	620
BspLI	GGNNCC	3 cut(s)	44, 61, 630
BspPI	GGATC	1 cut(s)	511
BspT107I	GGYRCC	2 cut(s)	59, 628
BspTNI	GGTCTC	1 cut(s)	230
BsrGI	TGTACA	1 cut(s)	594
BsrI	ACTGG	2 cut(s)	298, 538
BssECI	CCNNGG	1 cut(s)	632
BssMI	GATC	1 cut(s)	503
BssT1I	CCWWGG	1 cut(s)	632
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	3 cut(s)	241, 416, 526
Bst6I	CTCTTC	2 cut(s)	59, 318
BstAUI	TGTACA	1 cut(s)	594
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	64
BstF5I	GGATG	3 cut(s)	72, 550, 588
BstFNI	CGCG	1 cut(s)	620
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	1 cut(s)	506
BstMAI	GTCTC	2 cut(s)	230, 609
BstMBI	GATC	1 cut(s)	503
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	457
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	2 cut(s)	460, 578
BstSFI	CTRYAG	1 cut(s)	446
BstUI	CGCG	1 cut(s)	620
BsuRI	GGCC	2 cut(s)	460, 490
BtsCI	GGATG	3 cut(s)	72, 550, 588
Cac8I	GCNNGC	1 cut(s)	131
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	3 cut(s)	43, 458, 488
CseI	GACGC	1 cut(s)	626
Csp6I	GTAC	3 cut(s)	330, 595, 629
CviJI	RGCY	9 cut(s)	19, 32, 101, 112, 133, 310, 354, 460, 490
CviKI_1	RGCY	9 cut(s)	19, 32, 101, 112, 133, 310, 354, 460, 490
CviQI	GTAC	3 cut(s)	330, 595, 629
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	1 cut(s)	505
DpnII	GATC	1 cut(s)	503
Eam1104I	CTCTTC	2 cut(s)	59, 318
EarI	CTCTTC	2 cut(s)	59, 318
Ecl136II	GAGCTC	2 cut(s)	101, 133
Eco130I	CCWWGG	1 cut(s)	632
Eco24I	GRGCYC	2 cut(s)	103, 135
Eco31I	GGTCTC	1 cut(s)	230
Eco32I	GATATC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	43
Eco47III	AGCGCT	1 cut(s)	270
Eco53kI	GAGCTC	2 cut(s)	101, 133
EcoICRI	GAGCTC	2 cut(s)	101, 133
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	460
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	632
EcoT38I	GRGCYC	2 cut(s)	103, 135
ErhI	CCWWGG	1 cut(s)	632
Esp3I	CGTCTC	1 cut(s)	609
FaiI	YATR	3 cut(s)	254, 359, 476
FaqI	GGGAC	1 cut(s)	227
Fnu4HI	GCNGC	4 cut(s)	30, 91, 551, 661
FokI	GGATG	3 cut(s)	59, 557, 595
FriOI	GRGCYC	2 cut(s)	103, 135
Fsp4HI	GCNGC	4 cut(s)	30, 91, 551, 661
FspBI	CTAG	1 cut(s)	633
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	4 cut(s)	30, 91, 551, 661
GsaI	CCCAGC	2 cut(s)	354, 489
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	460, 490
HapII	CCGG	2 cut(s)	9, 579
HgaI	GACGC	1 cut(s)	626
HhaI	GCGC	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	3 cut(s)	84, 163, 404
HpaII	CCGG	2 cut(s)	9, 579
HphI	GGTGA	6 cut(s)	383, 398, 413, 428, 583, 643
Hpy166II	GTNNAC	2 cut(s)	175, 595
Hpy188I	TCNGA	2 cut(s)	105, 266
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	2 cut(s)	175, 595
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	9, 56
HpyCH4III	ACNGT	3 cut(s)	241, 416, 526
HpyCH4IV	ACGT	2 cut(s)	555, 588
HpyCH4V	TGCA	2 cut(s)	276, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	457
HpyF3I	CTNAG	1 cut(s)	64
HpySE526I	ACGT	2 cut(s)	555, 588
HspAI	GCGC	1 cut(s)	269
KpnI	GGTACC	1 cut(s)	632
Kzo9I	GATC	1 cut(s)	503
LmnI	GCTCC	4 cut(s)	98, 138, 154, 636
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	2 cut(s)	555, 588
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	1 cut(s)	505
MboI	GATC	1 cut(s)	503
MboII	GAAGA	5 cut(s)	24, 46, 305, 505, 617
MhlI	GDGCHC	2 cut(s)	103, 135
MluCI	AATT	3 cut(s)	259, 408, 509
MlyI	GAGTC	2 cut(s)	157, 413
MmeI	TCCRAC	2 cut(s)	522, 592
MnlI	CCTC	5 cut(s)	62, 133, 321, 362, 389
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	660
MspI	CCGG	2 cut(s)	9, 579
MspR9I	CCNGG	2 cut(s)	462, 580
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	462
MvnI	CGCG	1 cut(s)	620
MwoI	GCNNNNNNNGC	1 cut(s)	457
NciI	CCSGG	1 cut(s)	580
NdeII	GATC	1 cut(s)	503
NlaIV	GGNNCC	3 cut(s)	44, 61, 630
NmuCI	GTSAC	1 cut(s)	160
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	84
PfoI	TCCNGGA	1 cut(s)	578
PkrI	GCNGC	4 cut(s)	31, 92, 552, 662
PleI	GAGTC	2 cut(s)	157, 412
PpsI	GAGTC	2 cut(s)	157, 412
PpuMI	RGGWCCY	1 cut(s)	43
Psp124BI	GAGCTC	2 cut(s)	103, 135
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	460
PspFI	CCCAGC	2 cut(s)	350, 485
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	3 cut(s)	44, 61, 630
PspPI	GGNCC	3 cut(s)	43, 458, 488
PspPPI	RGGWCCY	1 cut(s)	43
RsaI	GTAC	3 cut(s)	331, 596, 630
RsaNI	GTAC	3 cut(s)	330, 595, 629
RseI	CAYNNNNRTG	1 cut(s)	218
SacI	GAGCTC	2 cut(s)	103, 135
SatI	GCNGC	4 cut(s)	30, 91, 551, 661
Sau3AI	GATC	1 cut(s)	503
Sau96I	GGNCC	3 cut(s)	43, 458, 488
SchI	GAGTC	2 cut(s)	157, 413
ScrFI	CCNGG	2 cut(s)	462, 580
SduI	GDGCHC	2 cut(s)	103, 135
SfcI	CTRYAG	1 cut(s)	446
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	3 cut(s)	259, 408, 509
SsiI	CCGC	4 cut(s)	29, 90, 550, 660
SspMI	CTAG	1 cut(s)	633
SstI	GAGCTC	2 cut(s)	103, 135
StyD4I	CCNGG	2 cut(s)	460, 578
StyI	CCWWGG	1 cut(s)	632
TaaI	ACNGT	3 cut(s)	241, 416, 526
TaiI	ACGT	2 cut(s)	558, 591
TaqI	TCGA	3 cut(s)	180, 186, 603
TasI	AATT	3 cut(s)	259, 408, 509
TatI	WGTACW	2 cut(s)	329, 594
TauI	GCSGC	4 cut(s)	32, 93, 553, 663
TfiI	GAWTC	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	3 cut(s)	61, 447, 505
TspGWI	ACGGA	2 cut(s)	111, 125
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	1 cut(s)	259
XmaJI	CCTAGG	1 cut(s)	632
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.