Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Forward (+)

7731243 .. 7733314

Gene Structure 2072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00286750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCCCAGAAGGTTGGTTTCTGCCGCAGCTCTTTTGTGGGGTTTGCTTCTCTTGGCGACATTAGTTGTCATTCTGAATCGATTTAGCAATGATAAAGTCCTATCAGAGCCAAACACCCTCAAAAGCAAAAGTGAGATTGTTGAGGAAAGTGATGATCTGGAACAAGTCACCCACCAAGTTTTCTTCGACATCGAAATCGATGGAAAACCCATTGGTATGAATTCTTTAACAGATGAGCAAAATTTTCAGGGTCGCATAGTCATGGGCCTTTTTGGAAAAACAGTTCCAAAAACCATAGCTATGGCTTTTGTGTTGCTACTTTTGAGTTTAATGAGCGCTTGGGTTTCAGGGGAGAAGGGAATTGGAAAGAGTATGAAACCTCTGCACTACAAAGGGAGTATATTTCATAGAATTATTCCCAGCTTTATGATTCAGGGAGGGGATTTCACTCTTGGCGATGGAAGAGGTGGAGAATCTATTTATGGGGAAAAGTTTGCAGATGAAAACTTCAAAGTAAAGCACACTGGACCAGGCAAGCTAAAGTCTTCCTTGTTTCCGACTAGTTACTCATGCAAAAGTTATTTATCAATGGCAAATTCTGGCCAAGACACCAATGGATCACAGTTCTTCATCACGACTGTCAAAACTAGCTGGTTGGATGGTCACCATGTTGTATTTGGCAAGGTGCTTTCTGGAATGGACGTTGTGTACAAGGTTGAACGAGTAGGAGGATCGGATGGGATACCTAAGAGTGAGGTTGTTATCAAAGACAGCGGTGCACTTCCGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

263

Amino Acids

28.71

Weight (kDa)

7.81

Isoelectric Point (pI)

22.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	81 - 257	1.1e-35	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	24, 774
AclWI	GGATC	2 cut(s)	625, 739
AcoI	YGGCCR	1 cut(s)	601
AcsI	RAATTY	3 cut(s)	220, 241, 595
AfaI	GTAC	1 cut(s)	710
AfeI	AGCGCT	1 cut(s)	337
AgsI	TTSAA	2 cut(s)	511, 719
AhlI	ACTAGT	1 cut(s)	560
AjnI	CCWGG	1 cut(s)	529
AloI	GAACNNNNNNTCC	2 cut(s)	267, 299
AluBI	AGCT	5 cut(s)	29, 299, 423, 538, 651
AluI	AGCT	5 cut(s)	29, 299, 423, 538, 651
Alw21I	GWGCWC	1 cut(s)	781
Alw44I	GTGCAC	1 cut(s)	777
AlwI	GGATC	2 cut(s)	625, 739
Aor51HI	AGCGCT	1 cut(s)	337
AoxI	GGCC	2 cut(s)	265, 601
ApaLI	GTGCAC	1 cut(s)	777
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	3 cut(s)	220, 241, 595
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	265, 527
AsuHPI	GGTGA	2 cut(s)	160, 656
AvaII	GGWCC	1 cut(s)	527
BaeGI	GKGCMC	1 cut(s)	781
BalI	TGGCCA	1 cut(s)	603
BbsI	GAAGAC	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	781
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	4 cut(s)	194, 452, 653, 731
BciT130I	CCWGG	1 cut(s)	531
BciVI	GTATCC	1 cut(s)	735
BcuI	ACTAGT	1 cut(s)	560
BfaI	CTAG	2 cut(s)	561, 648
BfoI	RGCGCY	1 cut(s)	339
BfuI	GTATCC	1 cut(s)	735
BisI	GCNGC	2 cut(s)	24, 27
BlsI	GCNGC	2 cut(s)	25, 28
Bme1390I	CCNGG	1 cut(s)	531
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	2 cut(s)	265, 527
BmrFI	CCNGG	1 cut(s)	531
BpiI	GAAGAC	1 cut(s)	537
Bsa29I	ATCGAT	2 cut(s)	79, 198
Bse1I	ACTGG	1 cut(s)	529
Bse3DI	GCAATG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	531
BseCI	ATCGAT	2 cut(s)	79, 198
BseGI	GGATG	2 cut(s)	664, 742
BseMI	GCAATG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	529
BseSI	GKGCMC	1 cut(s)	781
BseXI	GCAGC	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	419
BsgI	GTGCAG	1 cut(s)	368
BshFI	GGCC	2 cut(s)	267, 603
BshVI	ATCGAT	2 cut(s)	79, 198
BsiHKAI	GWGCWC	1 cut(s)	781
BsnI	GGCC	2 cut(s)	267, 603
Bsp1286I	GDGCHC	1 cut(s)	781
Bsp1407I	TGTACA	1 cut(s)	708
Bsp143I	GATC	3 cut(s)	154, 617, 731
BspACI	CCGC	2 cut(s)	24, 774
BspANI	GGCC	2 cut(s)	267, 603
BspDI	ATCGAT	2 cut(s)	79, 198
BspPI	GGATC	2 cut(s)	625, 739
BsrDI	GCAATG	1 cut(s)	94
BsrGI	TGTACA	1 cut(s)	708
BsrI	ACTGG	1 cut(s)	529
BssMI	GATC	3 cut(s)	154, 617, 731
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	3 cut(s)	283, 624, 640
Bst6I	CTCTTC	1 cut(s)	457
BstAUI	TGTACA	1 cut(s)	708
BstC8I	GCNNGC	1 cut(s)	536
BstDEI	CTNAG	1 cut(s)	747
BstEII	GGTNACC	1 cut(s)	662
BstF5I	GGATG	2 cut(s)	664, 742
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	3 cut(s)	157, 620, 734
BstMBI	GATC	3 cut(s)	154, 617, 731
BstNI	CCWGG	1 cut(s)	531
BstPI	GGTNACC	1 cut(s)	662
BstSCI	CCNGG	1 cut(s)	529
BstSLI	GKGCMC	1 cut(s)	781
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	537
BstXI	CCANNNNNNTGG	2 cut(s)	13, 301
Bsu15I	ATCGAT	2 cut(s)	79, 198
BsuI	GTATCC	1 cut(s)	735
BsuRI	GGCC	2 cut(s)	267, 603
BsuTUI	ATCGAT	2 cut(s)	79, 198
BtgZI	GCGATG	1 cut(s)	471
BtsCI	GGATG	2 cut(s)	664, 742
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	1 cut(s)	536
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	2 cut(s)	265, 527
ClaI	ATCGAT	2 cut(s)	79, 198
Csp6I	GTAC	1 cut(s)	709
CviAII	CATG	3 cut(s)	262, 570, 668
CviJI	RGCY	9 cut(s)	29, 109, 267, 299, 305, 423, 538, 603, 651
CviKI_1	RGCY	9 cut(s)	29, 109, 267, 299, 305, 423, 538, 603, 651
CviQI	GTAC	1 cut(s)	709
DdeI	CTNAG	1 cut(s)	747
DpnI	GATC	3 cut(s)	156, 619, 733
DpnII	GATC	3 cut(s)	154, 617, 731
EaeI	YGGCCR	1 cut(s)	601
Eam1104I	CTCTTC	1 cut(s)	457
EarI	CTCTTC	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	527
Eco47III	AGCGCT	1 cut(s)	337
Eco91I	GGTNACC	1 cut(s)	662
EcoO65I	GGTNACC	1 cut(s)	662
EcoRI	GAATTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	529
FaeI	CATG	3 cut(s)	265, 573, 671
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FatI	CATG	3 cut(s)	261, 569, 667
Fnu4HI	GCNGC	2 cut(s)	24, 27
FokI	GGATG	2 cut(s)	671, 749
Fsp4HI	GCNGC	2 cut(s)	24, 27
FspBI	CTAG	2 cut(s)	561, 648
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	2 cut(s)	24, 27
GsaI	CCCAGC	1 cut(s)	423
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	2 cut(s)	267, 603
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	3 cut(s)	265, 573, 671
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HinfI	GANTC	3 cut(s)	76, 430, 473
HphI	GGTGA	2 cut(s)	160, 656
Hpy166II	GTNNAC	2 cut(s)	709, 779
Hpy188I	TCNGA	5 cut(s)	75, 106, 558, 736, 786
Hpy188III	TCNNGA	3 cut(s)	158, 634, 693
Hpy8I	GTNNAC	2 cut(s)	709, 779
HpyAV	CCTTC	2 cut(s)	3, 349
HpyCH4III	ACNGT	3 cut(s)	283, 624, 640
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	4 cut(s)	385, 497, 573, 779
HpyF3I	CTNAG	1 cut(s)	747
HpySE526I	ACGT	1 cut(s)	702
Hsp92II	CATG	3 cut(s)	265, 573, 671
HspAI	GCGC	1 cut(s)	336
Kzo9I	GATC	3 cut(s)	154, 617, 731
Lsp1109I	GCAGC	1 cut(s)	38
MaeI	CTAG	2 cut(s)	561, 648
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	3 cut(s)	166, 563, 662
MalI	GATC	3 cut(s)	156, 619, 733
MboI	GATC	3 cut(s)	154, 617, 731
MboII	GAAGA	4 cut(s)	175, 474, 537, 619
MhlI	GDGCHC	1 cut(s)	781
MlsI	TGGCCA	1 cut(s)	603
MluCI	AATT	5 cut(s)	220, 241, 360, 411, 595
MluNI	TGGCCA	1 cut(s)	603
MmeI	TCCRAC	2 cut(s)	581, 636
MnlI	CCTC	7 cut(s)	128, 136, 390, 431, 458, 722, 748
Mox20I	TGGCCA	1 cut(s)	603
MscI	TGGCCA	1 cut(s)	603
MseI	TTAA	2 cut(s)	227, 329
MslI	CAYNNNNRTG	3 cut(s)	215, 260, 299
Msp20I	TGGCCA	1 cut(s)	603
MspA1I	CMGCKG	1 cut(s)	774
MspR9I	CCNGG	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	531
NdeII	GATC	3 cut(s)	154, 617, 731
NlaIII	CATG	3 cut(s)	265, 573, 671
NmuCI	GTSAC	2 cut(s)	166, 662
PfeI	GAWTC	3 cut(s)	76, 430, 473
PkrI	GCNGC	2 cut(s)	25, 28
Psp6I	CCWGG	1 cut(s)	529
PspEI	GGTNACC	1 cut(s)	662
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	529
PspPI	GGNCC	2 cut(s)	265, 527
RsaI	GTAC	1 cut(s)	710
RsaNI	GTAC	1 cut(s)	709
RseI	CAYNNNNRTG	3 cut(s)	215, 260, 299
SaqAI	TTAA	2 cut(s)	227, 329
SatI	GCNGC	2 cut(s)	24, 27
Sau3AI	GATC	3 cut(s)	154, 617, 731
Sau96I	GGNCC	2 cut(s)	265, 527
ScrFI	CCNGG	1 cut(s)	531
SduI	GDGCHC	1 cut(s)	781
SinI	GGWCC	1 cut(s)	527
SmiMI	CAYNNNNRTG	3 cut(s)	215, 260, 299
SpeI	ACTAGT	1 cut(s)	560
Sse9I	AATT	5 cut(s)	220, 241, 360, 411, 595
SsiI	CCGC	2 cut(s)	24, 774
SspMI	CTAG	2 cut(s)	561, 648
StyD4I	CCNGG	1 cut(s)	529
TaaI	ACNGT	3 cut(s)	283, 624, 640
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	4 cut(s)	79, 186, 192, 198
TasI	AATT	5 cut(s)	220, 241, 360, 411, 595
TatI	WGTACW	1 cut(s)	708
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	3 cut(s)	76, 430, 473
Tru1I	TTAA	2 cut(s)	227, 329
Tru9I	TTAA	2 cut(s)	227, 329
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	2 cut(s)	166, 662
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	2 cut(s)	166, 662
TspDTI	ATGAA	5 cut(s)	233, 389, 395, 516, 619
TspRI	CASTG	1 cut(s)	529
VneI	GTGCAC	1 cut(s)	777
VpaK11BI	GGWCC	1 cut(s)	527
XapI	RAATTY	3 cut(s)	220, 241, 595
XcmI	CCANNNNNNNNNTGG	2 cut(s)	611, 674
XspI	CTAG	2 cut(s)	561, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.