Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Forward (+)

4009919 .. 4011933

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G057200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCTCGGACGACGTCGTTTTTGCTCTGCACCCTGGTCCTCTTTGGAACCCTAGCTCTCATCCAGGCAAAGAAGTCAAAGGAGGATCTGAAGGAAGTGACCCACAAAGTTTTCTTTGATGTTGAGATTGCTGGCAAGCCTGCTGGTCGGGTTGTAATCGGTCTCTTTGGGAAGACGGTTCCCAAGACTGCAGAAAATTTTCGAGCCCTTTGCACAGGGGAGAAGGGCATTGGAAAGAGTGGAAAACCTCTCCATTTCAAGGGTAGCAAATTTCATAGGATTATACCCAGTTTCATGATTCAGGGAGGTGATTTCACACTTGGTGATGGAAGAGGTGGAGAATCAATTTACGGAGAGAAGTTTGCTGATGAGAATTTCAAGCTGAAGCATACTGGCCCAGGGCTTTTGTCAATGGCAAATGCTGGTTCCGACACCAATGGTTCACAATTCTTCATCACAACTGTGACAACTAACTGGTTGGATGGCAGACATGTTGTATTTGGAAAGGTGCTGTCTGGAATGGATGTGGTTTACAAGATTGAAGCCGAAGGAAATCAGAATGGCACACCCAAGAGCAAAGTTGTGATCGCAGACAGTGGCGAACTTCCTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016018 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022622 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0055044 GO:0071704 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

205

Amino Acids

21.93

Weight (kDa)

9.3

Isoelectric Point (pI)

6.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	17
AclWI	GGATC	1 cut(s)	93
AcsI	RAATTY	3 cut(s)	196, 269, 373
AcuI	CTGAAG	2 cut(s)	110, 404
AcyI	GRCGYC	1 cut(s)	14
AdeI	CACNNNGTG	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	259
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	3 cut(s)	259, 379, 542
AjnI	CCWGG	3 cut(s)	33, 63, 397
AleI	CACNNNNGTG	1 cut(s)	461
AluBI	AGCT	2 cut(s)	56, 382
AluI	AGCT	2 cut(s)	56, 382
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	93
AoxI	GGCC	1 cut(s)	394
ApoI	RAATTY	3 cut(s)	196, 269, 373
ArsI	GACNNNNNNTTYG	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	198
AspS9I	GGNCC	2 cut(s)	37, 395
AsuHPI	GGTGA	2 cut(s)	320, 335
AvaII	GGWCC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	179
BccI	CCATC	2 cut(s)	320, 476
BcgI	CGANNNNNNTGC	2 cut(s)	192, 226
BciT130I	CCWGG	3 cut(s)	35, 65, 399
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	2 cut(s)	53, 613
BfmI	CTRYAG	1 cut(s)	189
Bme1390I	CCNGG	3 cut(s)	35, 65, 399
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	37, 395
BmiI	GGNNCC	3 cut(s)	49, 180, 427
BmrFI	CCNGG	3 cut(s)	35, 65, 399
BmrI	ACTGGG	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	3 cut(s)	33, 397, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	3 cut(s)	288, 397, 479
BseBI	CCWGG	3 cut(s)	35, 65, 399
BseDI	CCNNGG	3 cut(s)	33, 397, 398
BseGI	GGATG	3 cut(s)	60, 487, 529
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseNI	ACTGG	3 cut(s)	288, 397, 479
BsgI	GTGCAG	1 cut(s)	13
BshFI	GGCC	1 cut(s)	396
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	396
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	85, 585
BspANI	GGCC	1 cut(s)	396
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	3 cut(s)	49, 180, 427
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	1 cut(s)	93
BspTNI	GGTCTC	1 cut(s)	167
BsrI	ACTGG	3 cut(s)	288, 397, 479
BssECI	CCNNGG	3 cut(s)	33, 397, 398
BssMI	GATC	2 cut(s)	85, 585
BssNI	GRCGYC	1 cut(s)	14
Bst2UI	CCWGG	3 cut(s)	35, 65, 399
Bst4CI	ACNGT	3 cut(s)	178, 463, 596
Bst6I	CTCTTC	1 cut(s)	325
BstACI	GRCGYC	1 cut(s)	14
BstC8I	GCNNGC	3 cut(s)	133, 137, 141
BstF5I	GGATG	3 cut(s)	60, 487, 529
BstKTI	GATC	2 cut(s)	88, 588
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	2 cut(s)	85, 585
BstNI	CCWGG	3 cut(s)	35, 65, 399
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	3 cut(s)	33, 63, 397
BstSFI	CTRYAG	1 cut(s)	189
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	396
BtsCI	GGATG	3 cut(s)	60, 487, 529
BtsIMutI	CAGTG	1 cut(s)	601
Cac8I	GCNNGC	3 cut(s)	133, 137, 141
CciI	TCATGA	1 cut(s)	294
Cfr13I	GGNCC	2 cut(s)	37, 395
CviAII	CATG	2 cut(s)	295, 491
CviJI	RGCY	8 cut(s)	5, 56, 139, 206, 382, 396, 403, 545
CviKI_1	RGCY	8 cut(s)	5, 56, 139, 206, 382, 396, 403, 545
DpnI	GATC	2 cut(s)	87, 587
DpnII	GATC	2 cut(s)	85, 585
DraIII	CACNNNGTG	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	208
Eco31I	GGTCTC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	2 cut(s)	110, 404
EcoRII	CCWGG	3 cut(s)	33, 63, 397
EcoT38I	GRGCYC	1 cut(s)	208
FaeI	CATG	2 cut(s)	298, 494
FaiI	YATR	5 cut(s)	276, 284, 296, 390, 492
FatI	CATG	2 cut(s)	294, 490
FokI	GGATG	3 cut(s)	47, 494, 536
FriOI	GRGCYC	1 cut(s)	208
FspBI	CTAG	2 cut(s)	53, 613
HaeIII	GGCC	1 cut(s)	396
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	298, 494
HinfI	GANTC	2 cut(s)	298, 341
HphI	GGTGA	2 cut(s)	320, 335
Hpy166II	GTNNAC	2 cut(s)	443, 532
Hpy188I	TCNGA	4 cut(s)	9, 90, 430, 558
Hpy188III	TCNNGA	2 cut(s)	295, 516
Hpy8I	GTNNAC	2 cut(s)	443, 532
Hpy99I	CGWCG	2 cut(s)	16, 19
HpyAV	CCTTC	3 cut(s)	85, 217, 542
HpyCH4III	ACNGT	3 cut(s)	178, 463, 596
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	30, 191, 213
HpySE526I	ACGT	1 cut(s)	14
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	298, 494
Kzo9I	GATC	2 cut(s)	85, 585
MaeI	CTAG	2 cut(s)	53, 613
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	97, 463
MalI	GATC	2 cut(s)	87, 587
MboI	GATC	2 cut(s)	85, 585
MboII	GAAGA	3 cut(s)	184, 342, 442
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	5 cut(s)	196, 269, 345, 373, 446
MmeI	TCCRAC	2 cut(s)	453, 459
MnlI	CCTC	5 cut(s)	50, 76, 258, 299, 326
MroXI	GAANNNNTTC	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	461
MspR9I	CCNGG	3 cut(s)	35, 65, 399
MvaI	CCWGG	3 cut(s)	35, 65, 399
NdeII	GATC	2 cut(s)	85, 585
NlaIII	CATG	2 cut(s)	298, 494
NlaIV	GGNNCC	3 cut(s)	49, 180, 427
NmuCI	GTSAC	2 cut(s)	97, 463
NspI	RCATGY	1 cut(s)	494
OliI	CACNNNNGTG	1 cut(s)	461
PagI	TCATGA	1 cut(s)	294
PasI	CCCWGGG	1 cut(s)	398
PciI	ACATGT	1 cut(s)	490
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	2 cut(s)	298, 341
PflFI	GACNNNGTC	1 cut(s)	13
PscI	ACATGT	1 cut(s)	490
Psp6I	CCWGG	3 cut(s)	33, 63, 397
PspGI	CCWGG	3 cut(s)	33, 63, 397
PspN4I	GGNNCC	3 cut(s)	49, 180, 427
PspPI	GGNCC	2 cut(s)	37, 395
PstI	CTGCAG	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	85
PsyI	GACNNNGTC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	461
Sau3AI	GATC	2 cut(s)	85, 585
Sau96I	GGNCC	2 cut(s)	37, 395
ScrFI	CCNGG	3 cut(s)	35, 65, 399
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	7 cut(s)	17, 58, 250, 310, 337, 384, 510
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	461
Sse9I	AATT	5 cut(s)	196, 269, 345, 373, 446
SspMI	CTAG	2 cut(s)	53, 613
StyD4I	CCNGG	3 cut(s)	33, 63, 397
TaaI	ACNGT	3 cut(s)	178, 463, 596
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	1 cut(s)	202
TaqII	GACCGA	1 cut(s)	149
TasI	AATT	5 cut(s)	196, 269, 345, 373, 446
TfiI	GAWTC	2 cut(s)	298, 341
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	2 cut(s)	97, 463
Tsp45I	GTSAC	2 cut(s)	97, 463
TspDTI	ATGAA	3 cut(s)	263, 283, 442
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	1 cut(s)	601
Tth111I	GACNNNGTC	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	3 cut(s)	196, 269, 373
XceI	RCATGY	1 cut(s)	494
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	2 cut(s)	53, 613
ZraI	GACGTC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.