Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011509.1

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Reverse (-)

10691 .. 12852

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011509.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atgcgatgtggtactggtgataaagaaaagaagaacaaggacgcaggtaatgagaaaaagaaagcctctaaggccaggaagaatttgactgaggacttggctaatgtcgttgactccaaccctaaggagaaggacaatgataaagtcctatcacagccaaacaccctcaaaaacaaaagtgagattgttgaggaaagtgatgatttggaacaagtgacccaccaagtgttcttcgatatcgaaatcgatggaaaacccattggtcgcatagtcatgggtctctttggaaaaacagttccaaaaaccataggggagaagggaattggaaagagtatgaaacctctgcactacaaagggagtatatttcatagaattattcccagctttatgattcagggaggggatttcactcttggagatggaagaggtggagaatcgatttatggggaaaagtttgcggatgaaaacttcaaagctaagcacactggaccaggttatttatcaatggcaaattctggccaagacaccaatggctcacagttcttcatcacgactgtcaaaactagctggtcggatggtcaccatgttgtatttggcaaggtgctttctggaatggacgttgtgtacaaggttgaacgagtaggaggatcggatgagatacctacgagtgaggttgttatcaaagacagcggtgcacttccaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

235

Amino Acids

25.66

Weight (kDa)

7.02

Isoelectric Point (pI)

16.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	35
AciI	CCGC	2 cut(s)	458, 690
AclWI	GGATC	1 cut(s)	655
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	2 cut(s)	82, 511
AdeI	CACNNNGTG	1 cut(s)	226
AfaI	GTAC	2 cut(s)	13, 626
AgsI	TTSAA	2 cut(s)	472, 635
AjnI	CCWGG	2 cut(s)	74, 490
AloI	GAACNNNNNNTCC	2 cut(s)	279, 311
AluBI	AGCT	3 cut(s)	384, 476, 567
AluI	AGCT	3 cut(s)	384, 476, 567
Alw21I	GWGCWC	1 cut(s)	697
Alw26I	GTCTC	1 cut(s)	284
Alw44I	GTGCAC	1 cut(s)	693
AlwI	GGATC	1 cut(s)	655
AoxI	GGCC	2 cut(s)	72, 517
ApaLI	GTGCAC	1 cut(s)	693
ApoI	RAATTY	2 cut(s)	82, 511
AspS9I	GGNCC	1 cut(s)	488
AsuHPI	GGTGA	2 cut(s)	29, 572
AvaII	GGWCC	1 cut(s)	488
AxyI	CCTNAGG	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	697
BalI	TGGCCA	1 cut(s)	519
Bbv12I	GWGCWC	1 cut(s)	697
BccI	CCATC	3 cut(s)	242, 413, 569
BciT130I	CCWGG	2 cut(s)	76, 492
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	564
BfuAI	ACCTGC	1 cut(s)	35
BglI	GCCNNNNNGGC	1 cut(s)	71
BlpI	GCTNAGC	1 cut(s)	477
Bme1390I	CCNGG	2 cut(s)	76, 492
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	1 cut(s)	488
BmrFI	CCNGG	2 cut(s)	76, 492
Bpu1102I	GCTNAGC	1 cut(s)	477
Bsa29I	ATCGAT	2 cut(s)	246, 437
BsaI	GGTCTC	1 cut(s)	284
Bse1I	ACTGG	2 cut(s)	19, 490
Bse21I	CCTNAGG	1 cut(s)	123
BseBI	CCWGG	2 cut(s)	76, 492
BseCI	ATCGAT	2 cut(s)	246, 437
BseGI	GGATG	3 cut(s)	466, 580, 658
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	2 cut(s)	19, 490
BseSI	GKGCMC	1 cut(s)	697
BseYI	CCCAGC	1 cut(s)	380
BsgI	GTGCAG	1 cut(s)	329
BshFI	GGCC	2 cut(s)	74, 519
BshVI	ATCGAT	2 cut(s)	246, 437
BsiHKAI	GWGCWC	1 cut(s)	697
BsmAI	GTCTC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	74, 519
Bso31I	GGTCTC	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	697
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	1 cut(s)	647
Bsp1720I	GCTNAGC	1 cut(s)	477
BspACI	CCGC	2 cut(s)	458, 690
BspANI	GGCC	2 cut(s)	74, 519
BspCNI	CTCAG	1 cut(s)	82
BspDI	ATCGAT	2 cut(s)	246, 437
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	655
BspTNI	GGTCTC	1 cut(s)	284
BsrGI	TGTACA	1 cut(s)	624
BsrI	ACTGG	2 cut(s)	19, 490
BssMI	GATC	1 cut(s)	647
Bst2UI	CCWGG	2 cut(s)	76, 492
Bst4CI	ACNGT	3 cut(s)	295, 540, 556
Bst6I	CTCTTC	1 cut(s)	418
BstAUI	TGTACA	1 cut(s)	624
BstDEI	CTNAG	4 cut(s)	69, 90, 123, 477
BstEII	GGTNACC	1 cut(s)	578
BstF5I	GGATG	3 cut(s)	466, 580, 658
BstKTI	GATC	1 cut(s)	650
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	647
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	2 cut(s)	76, 492
BstPI	GGTNACC	1 cut(s)	578
BstSCI	CCNGG	2 cut(s)	74, 490
BstSLI	GKGCMC	1 cut(s)	697
Bsu15I	ATCGAT	2 cut(s)	246, 437
Bsu36I	CCTNAGG	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	74, 519
BsuTUI	ATCGAT	2 cut(s)	246, 437
BtgZI	GCGATG	1 cut(s)	19
BtsCI	GGATG	3 cut(s)	466, 580, 658
BtsIMutI	CAGTG	1 cut(s)	483
BveI	ACCTGC	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	488
ClaI	ATCGAT	2 cut(s)	246, 437
CseI	GACGC	1 cut(s)	50
CsiI	ACCWGGT	1 cut(s)	490
Csp6I	GTAC	2 cut(s)	12, 625
CviAII	CATG	2 cut(s)	274, 584
CviJI	RGCY	9 cut(s)	65, 74, 101, 157, 384, 476, 519, 534, 567
CviKI_1	RGCY	9 cut(s)	65, 74, 101, 157, 384, 476, 519, 534, 567
CviQI	GTAC	2 cut(s)	12, 625
DdeI	CTNAG	4 cut(s)	69, 90, 123, 477
DpnI	GATC	1 cut(s)	649
DpnII	GATC	1 cut(s)	647
DraIII	CACNNNGTG	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	517
Eam1104I	CTCTTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	418
Eco31I	GGTCTC	1 cut(s)	284
Eco32I	GATATC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	488
Eco81I	CCTNAGG	1 cut(s)	123
Eco91I	GGTNACC	1 cut(s)	578
EcoO65I	GGTNACC	1 cut(s)	578
EcoRII	CCWGG	2 cut(s)	74, 490
EcoRV	GATATC	1 cut(s)	238
FaeI	CATG	2 cut(s)	277, 587
FaiI	YATR	9 cut(s)	269, 275, 308, 335, 362, 369, 389, 444, 585
FatI	CATG	2 cut(s)	273, 583
FokI	GGATG	3 cut(s)	473, 587, 665
FspBI	CTAG	1 cut(s)	564
GsaI	CCCAGC	1 cut(s)	384
HaeIII	GGCC	2 cut(s)	74, 519
HgaI	GACGC	1 cut(s)	50
Hin1II	CATG	2 cut(s)	277, 587
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	3 cut(s)	113, 391, 434
HphI	GGTGA	2 cut(s)	29, 572
Hpy166II	GTNNAC	3 cut(s)	112, 625, 695
Hpy188I	TCNGA	2 cut(s)	574, 652
Hpy188III	TCNNGA	2 cut(s)	550, 609
Hpy8I	GTNNAC	3 cut(s)	112, 625, 695
HpyAV	CCTTC	2 cut(s)	124, 310
HpyCH4III	ACNGT	3 cut(s)	295, 540, 556
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	2 cut(s)	346, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	4 cut(s)	69, 90, 123, 477
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	2 cut(s)	277, 587
Kzo9I	GATC	1 cut(s)	647
MabI	ACCWGGT	1 cut(s)	490
MaeI	CTAG	1 cut(s)	564
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	2 cut(s)	214, 578
MalI	GATC	1 cut(s)	649
MboI	GATC	1 cut(s)	647
MboII	GAAGA	5 cut(s)	43, 91, 223, 435, 535
MhlI	GDGCHC	1 cut(s)	697
MlsI	TGGCCA	1 cut(s)	519
MluCI	AATT	4 cut(s)	82, 321, 372, 511
MluNI	TGGCCA	1 cut(s)	519
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	2 cut(s)	141, 552
MnlI	CCTC	9 cut(s)	76, 85, 176, 184, 351, 392, 419, 638, 664
Mox20I	TGGCCA	1 cut(s)	519
MscI	TGGCCA	1 cut(s)	519
MslI	CAYNNNNRTG	1 cut(s)	272
Msp20I	TGGCCA	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	690
MspR9I	CCNGG	2 cut(s)	76, 492
MvaI	CCWGG	2 cut(s)	76, 492
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeII	GATC	1 cut(s)	647
NlaIII	CATG	2 cut(s)	277, 587
NmuCI	GTSAC	2 cut(s)	214, 578
PfeI	GAWTC	2 cut(s)	391, 434
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Psp6I	CCWGG	2 cut(s)	74, 490
PspEI	GGTNACC	1 cut(s)	578
PspFI	CCCAGC	1 cut(s)	380
PspGI	CCWGG	2 cut(s)	74, 490
PspPI	GGNCC	1 cut(s)	488
RsaI	GTAC	2 cut(s)	13, 626
RsaNI	GTAC	2 cut(s)	12, 625
RseI	CAYNNNNRTG	1 cut(s)	272
Sau3AI	GATC	1 cut(s)	647
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	76, 492
SduI	GDGCHC	1 cut(s)	697
SexAI	ACCWGGT	1 cut(s)	490
SinI	GGWCC	1 cut(s)	488
SmiMI	CAYNNNNRTG	1 cut(s)	272
Sse9I	AATT	4 cut(s)	82, 321, 372, 511
SsiI	CCGC	2 cut(s)	458, 690
SspMI	CTAG	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	74, 490
TaaI	ACNGT	3 cut(s)	295, 540, 556
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	4 cut(s)	234, 240, 246, 437
TasI	AATT	4 cut(s)	82, 321, 372, 511
TatI	WGTACW	1 cut(s)	624
TfiI	GAWTC	2 cut(s)	391, 434
TscAI	CASTG	1 cut(s)	490
TseFI	GTSAC	2 cut(s)	214, 578
Tsp45I	GTSAC	2 cut(s)	214, 578
TspDTI	ATGAA	4 cut(s)	350, 356, 477, 535
TspRI	CASTG	1 cut(s)	490
VneI	GTGCAC	1 cut(s)	693
VpaK11BI	GGWCC	1 cut(s)	488
XapI	RAATTY	2 cut(s)	82, 511
XcmI	CCANNNNNNNNNTGG	2 cut(s)	527, 590
XspI	CTAG	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.