Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Forward (+)

23717775 .. 23719778

Gene Structure 2004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G58710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCGAGCTCAGTGACGCTGCTTCTATGGAGTCTTCTTCTTCTCGGTACACTAAGCGCTATTCAGGCCAAAAAGTCTAAGGAAAACTTAAAGGAGATCACACACAAGGTTTATTTTGATGTTGAAATTGATGGGAAAGCAGCTGGTCGTATTGTCATGGGTCTATTTGGCAAGACAGTCCCCAAAACTGTAGAGAATTTCCGAGCTTTATGCACTGGGGAGAAAGGAATAGGTAAGAATGGGAAGGCGCTCCATTACAAGGGGAGTTCATTTCATAGGATCATACCAAGCTTTATGCTCCAAGGAGGCGATTTTACACATGGAAATGGAATGGGAGGAGAATCTATCTATGGTGAGAAGTTTGCTGATGAGAACTTCAAACTCAAGCATACTGGTCCAGGGTTCTTATCAATGGCAAATGCCGGTCAAGATACCAACGGATCACAGTTTTTCATCACAACTGTAACAACCAGCTGGTTGGATGGGCGACATGTGGTATTCGGGAAGGTAGTGACAGGAATGGATGTGGTGTACAAAGTCGAAGCTGAAGGAAATCAGAGTGGAACTCCTAAGAGTAAAGTGGTGATTGTAGACAGTGGTGAGCTTCCCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016018 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022622 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0055044 GO:0071704 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

204

Amino Acids

21.96

Weight (kDa)

9.08

Isoelectric Point (pI)

11.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	38 - 199	1.7e-47	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	591
AclWI	GGATC	2 cut(s)	287, 448
AcsI	RAATTY	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	2 cut(s)	49, 533
AfeI	AGCGCT	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	259
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	2 cut(s)	125, 379
AjnI	CCWGG	1 cut(s)	397
AluBI	AGCT	7 cut(s)	9, 143, 206, 291, 474, 545, 604
AluI	AGCT	7 cut(s)	9, 143, 206, 291, 474, 545, 604
Alw21I	GWGCWC	1 cut(s)	11
AlwI	GGATC	2 cut(s)	287, 448
Aor51HI	AGCGCT	1 cut(s)	58
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	2 cut(s)	19, 140
ApoI	RAATTY	1 cut(s)	196
AspLEI	GCGC	2 cut(s)	59, 250
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	3 cut(s)	365, 595, 611
AvaII	GGWCC	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	6, 152
BccI	CCATC	2 cut(s)	125, 476
BcgI	CGANNNNNNTGC	2 cut(s)	192, 226
BciT130I	CCWGG	1 cut(s)	399
BfmI	CTRYAG	1 cut(s)	189
BfoI	RGCGCY	2 cut(s)	60, 251
BisI	GCNGC	2 cut(s)	20, 141
BlsI	GCNGC	2 cut(s)	21, 142
Bme1390I	CCNGG	1 cut(s)	399
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	395
BmrFI	CCNGG	1 cut(s)	399
BmrI	ACTGGG	1 cut(s)	225
BmuI	ACTGGG	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	26
BplI	GAGNNNNNCTC	2 cut(s)	550, 582
BpuEI	CTTGAG	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	301, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse118I	RCCGGY	1 cut(s)	422
Bse1I	ACTGG	2 cut(s)	220, 397
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	301, 398
BseGI	GGATG	2 cut(s)	487, 529
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	2 cut(s)	220, 397
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	6, 152
BshFI	GGCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	423
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp1407I	TGTACA	1 cut(s)	531
Bsp143I	GATC	3 cut(s)	96, 279, 440
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	23
BspPI	GGATC	2 cut(s)	287, 448
BsrFI	RCCGGY	1 cut(s)	422
BsrGI	TGTACA	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	220, 397
BssAI	RCCGGY	1 cut(s)	422
BssECI	CCNNGG	2 cut(s)	301, 398
BssMI	GATC	3 cut(s)	96, 279, 440
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	5 cut(s)	178, 190, 447, 463, 596
BstAUI	TGTACA	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	4 cut(s)	10, 53, 78, 570
BstF5I	GGATG	2 cut(s)	487, 529
BstH2I	RGCGCY	2 cut(s)	60, 251
BstHHI	GCGC	2 cut(s)	59, 250
BstKTI	GATC	3 cut(s)	99, 282, 443
BstMBI	GATC	3 cut(s)	96, 279, 440
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	399
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	6, 152
BstV2I	GAAGAC	1 cut(s)	26
BstXI	CCANNNNNNTGG	1 cut(s)	478
BsuRI	GGCC	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	487, 529
BtsIMutI	CAGTG	3 cut(s)	18, 213, 601
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	2 cut(s)	59, 250
Cfr10I	RCCGGY	1 cut(s)	422
Cfr13I	GGNCC	1 cut(s)	395
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	2 cut(s)	48, 532
CviAII	CATG	3 cut(s)	157, 320, 491
CviJI	RGCY	8 cut(s)	9, 68, 143, 206, 291, 474, 545, 604
CviKI_1	RGCY	8 cut(s)	9, 68, 143, 206, 291, 474, 545, 604
CviQI	GTAC	2 cut(s)	48, 532
DdeI	CTNAG	4 cut(s)	10, 53, 78, 570
DpnI	GATC	3 cut(s)	98, 281, 442
DpnII	GATC	3 cut(s)	96, 279, 440
Ecl136II	GAGCTC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	395
Eco47III	AGCGCT	1 cut(s)	58
Eco53kI	GAGCTC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	567
EcoICRI	GAGCTC	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	3 cut(s)	160, 323, 494
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	3 cut(s)	156, 319, 490
FblI	GTMKAC	1 cut(s)	591
Fnu4HI	GCNGC	2 cut(s)	20, 141
FokI	GGATG	2 cut(s)	494, 536
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	2 cut(s)	20, 141
GlaI	GCGC	2 cut(s)	58, 249
GluI	GCNGC	2 cut(s)	20, 141
HaeII	RGCGCY	2 cut(s)	60, 251
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	1 cut(s)	423
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	2 cut(s)	59, 250
Hin1II	CATG	3 cut(s)	160, 323, 494
Hin6I	GCGC	2 cut(s)	57, 248
HinP1I	GCGC	2 cut(s)	57, 248
HindIII	AAGCTT	1 cut(s)	289
HinfI	GANTC	2 cut(s)	31, 341
HpaII	CCGG	1 cut(s)	423
HphI	GGTGA	3 cut(s)	365, 595, 611
Hpy166II	GTNNAC	3 cut(s)	50, 532, 592
Hpy188I	TCNGA	2 cut(s)	203, 558
Hpy188III	TCNNGA	2 cut(s)	428, 502
Hpy8I	GTNNAC	3 cut(s)	50, 532, 592
HpyAV	CCTTC	3 cut(s)	238, 499, 542
HpyCH4III	ACNGT	5 cut(s)	178, 190, 447, 463, 596
HpyCH4V	TGCA	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	4 cut(s)	10, 53, 78, 570
Hsp92II	CATG	3 cut(s)	160, 323, 494
HspAI	GCGC	2 cut(s)	57, 248
Kzo9I	GATC	3 cut(s)	96, 279, 440
LmnI	GCTCC	2 cut(s)	255, 303
Lsp1109I	GCAGC	2 cut(s)	6, 152
MaeIII	GTNAC	3 cut(s)	13, 463, 511
MalI	GATC	3 cut(s)	98, 281, 442
MboI	GATC	3 cut(s)	96, 279, 440
MboII	GAAGA	3 cut(s)	26, 29, 32
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	2 cut(s)	126, 196
MlyI	GAGTC	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	2 cut(s)	299, 329
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	324
MspA1I	CMGCKG	2 cut(s)	143, 474
MspI	CCGG	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	3 cut(s)	96, 279, 440
NlaIII	CATG	3 cut(s)	160, 323, 494
NmuCI	GTSAC	2 cut(s)	13, 511
NspI	RCATGY	1 cut(s)	494
PciI	ACATGT	1 cut(s)	490
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	21, 142
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PscI	ACATGT	1 cut(s)	490
Psp124BI	GAGCTC	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspPI	GGNCC	1 cut(s)	395
PvuII	CAGCTG	2 cut(s)	143, 474
RsaI	GTAC	2 cut(s)	49, 533
RsaNI	GTAC	2 cut(s)	48, 532
RseI	CAYNNNNRTG	1 cut(s)	324
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	2 cut(s)	20, 141
Sau3AI	GATC	3 cut(s)	96, 279, 440
Sau96I	GGNCC	1 cut(s)	395
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	11
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	2 cut(s)	126, 196
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	5 cut(s)	178, 190, 447, 463, 596
TaqI	TCGA	1 cut(s)	540
TasI	AATT	2 cut(s)	126, 196
TatI	WGTACW	1 cut(s)	531
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	3 cut(s)	18, 220, 601
TseFI	GTSAC	2 cut(s)	13, 511
TseI	GCWGC	2 cut(s)	19, 140
Tsp45I	GTSAC	2 cut(s)	13, 511
TspDTI	ATGAA	3 cut(s)	258, 263, 442
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	3 cut(s)	18, 220, 601
VpaK11BI	GGWCC	1 cut(s)	395
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	1 cut(s)	494
XmiI	GTMKAC	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.