Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Reverse (-)

58002541 .. 58004598

Gene Structure 2058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG356700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGATCGTGCATCTCCCACTACCGGGAAGAGGAGAAAGAGAACAGGTTGTTGAGCCCAAAAGAAAATTGGAGCCAAACACAGGTGATGTCTCGGTGTCCTCGAAAAAGCTACGACTGAGTTTGGCTATTGATAAGGGCAACATTGATGCTGCAACTATGAGTTTAATTGCTCTGGAACCTGCTGTGATCAAGACAACTAAGAAGAAATGTGGCCAACCTGCTGGTAGCCTAAACAAGATGCGCTATGGTACTGGTGATAAAGGAAAGAAGAACAAGGACGCAGTCTTAAGACTACAATCTTGCTGCGGAAGACTTGGTAAACGAAAGCGGAGAGAGATGCCCGGAAGGTTGGTTTCTGCAGCAGCTCTTTTGTGGGGTTTGCTTCTCTTGGCGACATTAGTTGTCATTCTGAATCGATTTAGCAATGATAAAGTCCTATCAGAGCCAAACACCCTCAAAAACAAAAGTGAGATTGTTGAGGAAAGTGATGATTTGGAACAAGTGACCCACCAAGTATTCTTCGATATCGAAATCGATGGAAAACCCATTGGTCGCATAGTCATGGGTCTCTTTGGAAAAACAGTTCCAAAAACCATAGGTAGGTACCCAGTAATTCATCCGGGAGGGGATTTCACTCTTGGTGATGGAAGAGGTGGAGAATCGATTTATGGGGAAAAGTTTGCAGATGAAAACTTCAAAGTTAAGCACACTGGACCAGGCAAGCTAAAGTCTTCCTTGTTTCCGAGTAGTTACTCATGCAAAAGTTCTCCCAAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

259

Amino Acids

28.28

Weight (kDa)

9.73

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	187, 226
Acc65I	GGTACC	1 cut(s)	603
AccB1I	GGYRCC	1 cut(s)	603
AciI	CCGC	2 cut(s)	306, 328
AcoI	YGGCCR	1 cut(s)	211
AfaI	GTAC	2 cut(s)	250, 605
AfiI	CCNNNNNNNGG	5 cut(s)	22, 23, 29, 80, 600
AflII	CTTAAG	1 cut(s)	286
AgsI	TTSAA	1 cut(s)	697
AjnI	CCWGG	1 cut(s)	715
AloI	GAACNNNNNNTCC	2 cut(s)	567, 599
AluBI	AGCT	3 cut(s)	109, 365, 724
AluI	AGCT	3 cut(s)	109, 365, 724
Alw26I	GTCTC	2 cut(s)	94, 572
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	4 cut(s)	149, 303, 359, 362
Asp718I	GGTACC	1 cut(s)	603
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	713
AsuC2I	CCSGG	3 cut(s)	24, 342, 621
AsuHPI	GGTGA	3 cut(s)	95, 266, 653
AvaII	GGWCC	1 cut(s)	713
BalI	TGGCCA	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	603
BanII	GRGCYC	1 cut(s)	57
BbsI	GAAGAC	2 cut(s)	316, 723
BbvI	GCAGC	4 cut(s)	136, 290, 371, 374
BccI	CCATC	2 cut(s)	530, 638
BciT130I	CCWGG	1 cut(s)	717
BclI	TGATCA	1 cut(s)	186
BcnI	CCSGG	3 cut(s)	24, 342, 621
BcoDI	GTCTC	2 cut(s)	94, 572
BfmI	CTRYAG	1 cut(s)	357
BfrI	CTTAAG	1 cut(s)	286
BfuAI	ACCTGC	2 cut(s)	187, 226
BisI	GCNGC	4 cut(s)	150, 304, 360, 363
BlsI	GCNGC	4 cut(s)	151, 305, 361, 364
Bme1390I	CCNGG	4 cut(s)	24, 342, 621, 717
Bme18I	GGWCC	1 cut(s)	713
BmgT120I	GGNCC	1 cut(s)	713
BmiI	GGNNCC	3 cut(s)	72, 177, 605
BmrFI	CCNGG	4 cut(s)	24, 342, 621, 717
BmrI	ACTGGG	1 cut(s)	602
BmsI	GCATC	4 cut(s)	19, 136, 228, 327
BmuI	ACTGGG	1 cut(s)	602
BpiI	GAAGAC	2 cut(s)	316, 723
BpuMI	CCSGG	3 cut(s)	24, 342, 621
Bsa29I	ATCGAT	3 cut(s)	415, 534, 662
BsaI	GGTCTC	1 cut(s)	572
Bsc4I	CCNNNNNNNGG	5 cut(s)	22, 23, 29, 80, 600
Bse1I	ACTGG	3 cut(s)	256, 608, 715
Bse3DI	GCAATG	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	717
BseCI	ATCGAT	3 cut(s)	415, 534, 662
BseGI	GGATG	1 cut(s)	616
BseLI	CCNNNNNNNGG	5 cut(s)	22, 23, 29, 80, 600
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	3 cut(s)	256, 608, 715
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	4 cut(s)	136, 290, 371, 374
BshFI	GGCC	1 cut(s)	213
BshNI	GGYRCC	1 cut(s)	603
BshVI	ATCGAT	3 cut(s)	415, 534, 662
BsiSI	CCGG	3 cut(s)	23, 342, 620
BslI	CCNNNNNNNGG	5 cut(s)	22, 23, 29, 80, 600
BsmAI	GTCTC	2 cut(s)	94, 572
BsnI	GGCC	1 cut(s)	213
Bso31I	GGTCTC	1 cut(s)	572
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	3, 186
BspACI	CCGC	2 cut(s)	306, 328
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	108
BspDI	ATCGAT	3 cut(s)	415, 534, 662
BspLI	GGNNCC	3 cut(s)	72, 177, 605
BspMAI	CTGCAG	1 cut(s)	361
BspMI	ACCTGC	2 cut(s)	187, 226
BspT107I	GGYRCC	1 cut(s)	603
BspTI	CTTAAG	1 cut(s)	286
BspTNI	GGTCTC	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	430
BsrI	ACTGG	3 cut(s)	256, 608, 715
BssMI	GATC	2 cut(s)	3, 186
Bst2UI	CCWGG	1 cut(s)	717
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	2 cut(s)	22, 643
BstAFI	CTTAAG	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	722
BstDEI	CTNAG	2 cut(s)	116, 198
BstF5I	GGATG	1 cut(s)	616
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	2 cut(s)	6, 189
BstMAI	GTCTC	2 cut(s)	94, 572
BstMBI	GATC	2 cut(s)	3, 186
BstNI	CCWGG	1 cut(s)	717
BstSCI	CCNGG	4 cut(s)	22, 340, 619, 715
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	4 cut(s)	136, 290, 371, 374
BstV2I	GAAGAC	2 cut(s)	316, 723
BstXI	CCANNNNNNTGG	1 cut(s)	221
Bsu15I	ATCGAT	3 cut(s)	415, 534, 662
BsuRI	GGCC	1 cut(s)	213
BsuTUI	ATCGAT	3 cut(s)	415, 534, 662
BtsCI	GGATG	1 cut(s)	616
BtsIMutI	CAGTG	1 cut(s)	708
BveI	ACCTGC	2 cut(s)	187, 226
Cac8I	GCNNGC	1 cut(s)	722
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	713
ClaI	ATCGAT	3 cut(s)	415, 534, 662
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	249, 604
CviAII	CATG	2 cut(s)	562, 756
CviJI	RGCY	9 cut(s)	55, 73, 109, 125, 213, 228, 365, 445, 724
CviKI_1	RGCY	9 cut(s)	55, 73, 109, 125, 213, 228, 365, 445, 724
CviQI	GTAC	2 cut(s)	249, 604
DdeI	CTNAG	2 cut(s)	116, 198
DpnI	GATC	2 cut(s)	5, 188
DpnII	GATC	2 cut(s)	3, 186
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	2 cut(s)	22, 643
EarI	CTCTTC	2 cut(s)	22, 643
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	572
Eco32I	GATATC	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	713
EcoRII	CCWGG	1 cut(s)	715
EcoRV	GATATC	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	2 cut(s)	565, 759
FaiI	YATR	7 cut(s)	158, 246, 557, 563, 596, 669, 757
FalI	AAGNNNNNCTT	2 cut(s)	719, 751
FatI	CATG	2 cut(s)	561, 755
FbaI	TGATCA	1 cut(s)	186
Fnu4HI	GCNGC	4 cut(s)	150, 304, 360, 363
FokI	GGATG	1 cut(s)	603
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	4 cut(s)	150, 304, 360, 363
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	4 cut(s)	150, 304, 360, 363
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	3 cut(s)	23, 342, 620
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	565, 759
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HinfI	GANTC	2 cut(s)	412, 659
HpaII	CCGG	3 cut(s)	23, 342, 620
HphI	GGTGA	3 cut(s)	95, 266, 653
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	3 cut(s)	411, 442, 744
Hpy188III	TCNNGA	2 cut(s)	173, 190
Hpy8I	GTNNAC	1 cut(s)	320
HpyAV	CCTTC	1 cut(s)	339
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4V	TGCA	5 cut(s)	10, 152, 359, 683, 759
HpyF3I	CTNAG	2 cut(s)	116, 198
Hsp92II	CATG	2 cut(s)	565, 759
HspAI	GCGC	1 cut(s)	241
KpnI	GGTACC	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	2 cut(s)	3, 186
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	4 cut(s)	136, 290, 371, 374
LweI	GCATC	4 cut(s)	19, 136, 228, 327
MaeIII	GTNAC	2 cut(s)	502, 749
MalI	GATC	2 cut(s)	5, 188
MboI	GATC	2 cut(s)	3, 186
MboII	GAAGA	7 cut(s)	39, 214, 280, 321, 511, 660, 723
MhlI	GDGCHC	1 cut(s)	57
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	3 cut(s)	65, 165, 612
MluNI	TGGCCA	1 cut(s)	213
MnlI	CCTC	6 cut(s)	23, 109, 464, 472, 617, 644
Mox20I	TGGCCA	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	3 cut(s)	164, 287, 702
MslI	CAYNNNNRTG	1 cut(s)	560
Msp20I	TGGCCA	1 cut(s)	213
MspCI	CTTAAG	1 cut(s)	286
MspI	CCGG	3 cut(s)	23, 342, 620
MspR9I	CCNGG	4 cut(s)	24, 342, 621, 717
MvaI	CCWGG	1 cut(s)	717
NciI	CCSGG	3 cut(s)	24, 342, 621
NdeII	GATC	2 cut(s)	3, 186
NlaIII	CATG	2 cut(s)	565, 759
NlaIV	GGNNCC	3 cut(s)	72, 177, 605
NmuCI	GTSAC	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	412, 659
PflFI	GACNNNGTC	1 cut(s)	281
PfoI	TCCNGGA	1 cut(s)	619
PkrI	GCNGC	4 cut(s)	151, 305, 361, 364
Psp6I	CCWGG	1 cut(s)	715
PspGI	CCWGG	1 cut(s)	715
PspN4I	GGNNCC	3 cut(s)	72, 177, 605
PspPI	GGNCC	1 cut(s)	713
PstI	CTGCAG	1 cut(s)	361
PsyI	GACNNNGTC	1 cut(s)	281
RsaI	GTAC	2 cut(s)	250, 605
RsaNI	GTAC	2 cut(s)	249, 604
RseI	CAYNNNNRTG	1 cut(s)	560
SaqAI	TTAA	3 cut(s)	164, 287, 702
SatI	GCNGC	4 cut(s)	150, 304, 360, 363
Sau3AI	GATC	2 cut(s)	3, 186
Sau96I	GGNCC	1 cut(s)	713
ScrFI	CCNGG	4 cut(s)	24, 342, 621, 717
SduI	GDGCHC	1 cut(s)	57
SfaNI	GCATC	4 cut(s)	19, 136, 228, 327
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	713
SmiMI	CAYNNNNRTG	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	3 cut(s)	65, 165, 612
SsiI	CCGC	2 cut(s)	306, 328
StyD4I	CCNGG	4 cut(s)	22, 340, 619, 715
TaaI	ACNGT	1 cut(s)	583
TaqI	TCGA	6 cut(s)	101, 415, 522, 528, 534, 662
TasI	AATT	3 cut(s)	65, 165, 612
TfiI	GAWTC	2 cut(s)	412, 659
Tru1I	TTAA	3 cut(s)	164, 287, 702
Tru9I	TTAA	3 cut(s)	164, 287, 702
TscAI	CASTG	1 cut(s)	715
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	4 cut(s)	149, 303, 359, 362
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	2 cut(s)	605, 702
TspRI	CASTG	1 cut(s)	715
Tth111I	GACNNNGTC	1 cut(s)	281
Vha464I	CTTAAG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	713
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.