Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Reverse (-)

74365684 .. 74367639

Gene Structure 1956 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G042470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCTAGAACGACGTCGTTGCTGCTCTGTACTCTGGTCCTCTTCGGAGTCCTAGCTCTAATTGAGGCAAAGAAATCCAAGGAGGATCTGAAGGAAGTGACCTCCAAGGTTTACTTCGATGTTGAAATTGCTGGGAAGCCTGCTGGTCGTATTGTCATGGGACTCTTTGGGAAGGCTGTTCCTAAGACGGCAGAAAATTTCCGAGCTCTTTGCACAGGGGTGAAAGGCATTGGAAAGAGCGGAAAACCTCTCCATTACAAGGGTAGCAAATTCCACAGGATTATTCCCAGCTTCATGCTTCAGGGAGGTGATTTCACTCTCGGTGATGGAAGAGGTGGAGAATCAATTTATGGAGAGAAGTTTGCTGATGAGAATTTCAAGCTGAAGCATACTGGACCAGGGCTTTTGTCAATGGCAAATGCTGGTCCAGACACCAATGGTTCACAATTCTTCATCACCACTGTGACAACTAGCTGGTTGGATGGCAGACATGTTGTATTTGGAAAGGTGCTGTCTGGCATGGATGTGGTTTACAAGGTTGAAGCTGAAGGAAGTCAGGGTGGAACACCCAAGAGCAAAGTTGTGATCGTTGACAGCGGCGAACTTCCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016018 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022622 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0055044 GO:0071704 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

204

Amino Acids

21.76

Weight (kDa)

9.26

Isoelectric Point (pI)

13.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	38 - 199	3.9e-47	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	240
AciI	CCGC	2 cut(s)	240, 597
AclWI	GGATC	1 cut(s)	93
AcsI	RAATTY	3 cut(s)	196, 269, 373
AcuI	CTGAAG	4 cut(s)	110, 284, 404, 567
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	259
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	3 cut(s)	125, 379, 542
AjnI	CCWGG	1 cut(s)	397
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AleI	CACNNNNGTG	2 cut(s)	218, 461
AluBI	AGCT	6 cut(s)	56, 206, 291, 382, 474, 545
AluI	AGCT	6 cut(s)	56, 206, 291, 382, 474, 545
Alw21I	GWGCWC	1 cut(s)	208
AlwI	GGATC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	3 cut(s)	196, 269, 373
AspS9I	GGNCC	3 cut(s)	37, 395, 425
AsuHPI	GGTGA	4 cut(s)	232, 320, 335, 448
AvaII	GGWCC	3 cut(s)	37, 395, 425
BanII	GRGCYC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	9
BccI	CCATC	2 cut(s)	320, 476
BceAI	ACGGC	1 cut(s)	204
BcgI	CGANNNNNNTGC	3 cut(s)	35, 192, 226
BciT130I	CCWGG	1 cut(s)	399
BfaI	CTAG	3 cut(s)	6, 53, 471
BisI	GCNGC	2 cut(s)	23, 598
BlsI	GCNGC	2 cut(s)	24, 599
Bme1390I	CCNGG	1 cut(s)	399
Bme18I	GGWCC	3 cut(s)	37, 395, 425
BmgT120I	GGNCC	3 cut(s)	37, 395, 425
BmrFI	CCNGG	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	3 cut(s)	78, 105, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	397
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	3 cut(s)	78, 105, 398
BseGI	GGATG	2 cut(s)	487, 529
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseNI	ACTGG	1 cut(s)	397
BseXI	GCAGC	1 cut(s)	9
BseYI	CCCAGC	2 cut(s)	131, 287
BsiHKAI	GWGCWC	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	85, 585
BspACI	CCGC	2 cut(s)	240, 597
BspPI	GGATC	1 cut(s)	93
BsrBI	CCGCTC	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	397
BssECI	CCNNGG	3 cut(s)	78, 105, 398
BssMI	GATC	2 cut(s)	85, 585
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	2 cut(s)	78, 105
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	2 cut(s)	47, 325
BstACI	GRCGYC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	487, 529
BstKTI	GATC	2 cut(s)	88, 588
BstMBI	GATC	2 cut(s)	85, 585
BstNI	CCWGG	1 cut(s)	399
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	9
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	487, 529
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	1 cut(s)	141
Cfr13I	GGNCC	3 cut(s)	37, 395, 425
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	4 cut(s)	157, 295, 491, 520
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	2 cut(s)	87, 587
DpnII	GATC	2 cut(s)	85, 585
Eam1104I	CTCTTC	2 cut(s)	47, 325
EarI	CTCTTC	2 cut(s)	47, 325
Ecl136II	GAGCTC	1 cut(s)	206
Eco130I	CCWWGG	2 cut(s)	78, 105
Eco24I	GRGCYC	1 cut(s)	208
Eco47I	GGWCC	3 cut(s)	37, 395, 425
Eco53kI	GAGCTC	1 cut(s)	206
Eco57I	CTGAAG	4 cut(s)	110, 284, 404, 567
EcoICRI	GAGCTC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	2 cut(s)	78, 105
EcoT38I	GRGCYC	1 cut(s)	208
ErhI	CCWWGG	2 cut(s)	78, 105
FaeI	CATG	4 cut(s)	160, 298, 494, 523
FaiI	YATR	6 cut(s)	158, 296, 351, 390, 492, 521
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	4 cut(s)	156, 294, 490, 519
Fnu4HI	GCNGC	2 cut(s)	23, 598
FokI	GGATG	2 cut(s)	494, 536
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	2 cut(s)	23, 598
FspBI	CTAG	3 cut(s)	6, 53, 471
GluI	GCNGC	2 cut(s)	23, 598
GsaI	CCCAGC	2 cut(s)	135, 291
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	4 cut(s)	160, 298, 494, 523
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HinfI	GANTC	3 cut(s)	48, 162, 341
HphI	GGTGA	4 cut(s)	232, 320, 335, 448
Hpy166II	GTNNAC	4 cut(s)	112, 443, 532, 592
Hpy188I	TCNGA	3 cut(s)	47, 90, 203
Hpy188III	TCNNGA	1 cut(s)	428
Hpy8I	GTNNAC	4 cut(s)	112, 443, 532, 592
Hpy99I	CGWCG	2 cut(s)	16, 19
HpyAV	CCTTC	3 cut(s)	85, 166, 542
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	213
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	14
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	4 cut(s)	160, 298, 494, 523
Kzo9I	GATC	2 cut(s)	85, 585
Lsp1109I	GCAGC	1 cut(s)	9
MaeI	CTAG	3 cut(s)	6, 53, 471
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	97, 463
MalI	GATC	2 cut(s)	87, 587
MbiI	CCGCTC	1 cut(s)	240
MboI	GATC	2 cut(s)	85, 585
MboII	GAAGA	3 cut(s)	34, 342, 442
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	7 cut(s)	60, 126, 196, 269, 345, 373, 446
MlyI	GAGTC	2 cut(s)	57, 156
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	7 cut(s)	50, 58, 76, 112, 258, 299, 326
MseI	TTAA	1 cut(s)	613
MslI	CAYNNNNRTG	3 cut(s)	218, 461, 524
MspA1I	CMGCKG	1 cut(s)	597
MspR9I	CCNGG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	399
NdeII	GATC	2 cut(s)	85, 585
NlaIII	CATG	4 cut(s)	160, 298, 494, 523
NmuCI	GTSAC	2 cut(s)	97, 463
NspI	RCATGY	1 cut(s)	494
OliI	CACNNNNGTG	2 cut(s)	218, 461
PciI	ACATGT	1 cut(s)	490
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	24, 599
PleI	GAGTC	2 cut(s)	56, 156
PpsI	GAGTC	2 cut(s)	56, 156
PscI	ACATGT	1 cut(s)	490
Psp124BI	GAGCTC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	397
PspFI	CCCAGC	2 cut(s)	131, 287
PspGI	CCWGG	1 cut(s)	397
PspPI	GGNCC	3 cut(s)	37, 395, 425
PsuI	RGATCY	1 cut(s)	85
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
RseI	CAYNNNNRTG	3 cut(s)	218, 461, 524
SacI	GAGCTC	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	613
SatI	GCNGC	2 cut(s)	23, 598
Sau3AI	GATC	2 cut(s)	85, 585
Sau96I	GGNCC	3 cut(s)	37, 395, 425
SchI	GAGTC	2 cut(s)	57, 156
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	208
SinI	GGWCC	3 cut(s)	37, 395, 425
SmiMI	CAYNNNNRTG	3 cut(s)	218, 461, 524
Sse9I	AATT	7 cut(s)	60, 126, 196, 269, 345, 373, 446
SsiI	CCGC	2 cut(s)	240, 597
SspMI	CTAG	3 cut(s)	6, 53, 471
SstI	GAGCTC	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	2 cut(s)	78, 105
TaaI	ACNGT	1 cut(s)	463
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	1 cut(s)	117
TasI	AATT	7 cut(s)	60, 126, 196, 269, 345, 373, 446
TatI	WGTACW	1 cut(s)	29
TauI	GCSGC	1 cut(s)	600
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	1 cut(s)	613
Tru9I	TTAA	1 cut(s)	613
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	2 cut(s)	97, 463
TseI	GCWGC	1 cut(s)	22
Tsp45I	GTSAC	2 cut(s)	97, 463
TspDTI	ATGAA	2 cut(s)	283, 442
TspRI	CASTG	1 cut(s)	466
VpaK11BI	GGWCC	3 cut(s)	37, 395, 425
XapI	RAATTY	3 cut(s)	196, 269, 373
XceI	RCATGY	1 cut(s)	494
XspI	CTAG	3 cut(s)	6, 53, 471
ZraI	GACGTC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.