Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Forward (+)

5724914 .. 5727412

Gene Structure 2499 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1070100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGTCGAACGACGTCGTTGATGCTCTGTACCCTCGTCCTCTTCGGAACCCTAGCTCTCATTGAGGCAAAGAAGTCGAAGGAGGATCTGAAGGAAGTGACCCACAAGGTTTACTTTGATGTCGAGATTTCTGGAAAGCCAGCTGGACGGGTTGTGATCGGTCTCTTTGGGAAGGCGGTTCCCAAGACTGCAGAGAATTTTCGAGCTCTTTGCACAGGGGAGAAAGGCGTTGGAAAGAGTGGAAAGCCTCTCCATTTCAAGGGTAGCAAATTCCACAGGATTATACCCAGTTTCATGATCCAAGGAGGTGATTTCACACTAGGTGATGGAAGAGGGGGAGAGTCAATTTACGGAGAGAAGTTCGCTGATGAAAATTTCAAGCTAAAGCATACTGGCCCAGGGCTTTTGTCAATGGCAAATGCTGGTCCCGACACCAATGGTTCACAATTCTTCATCACAACTGTGACGACTAACTGGTTGGATGGCAGACATGTTGTATTCGGAAAGGTGCTGTCTGGAATGGATGTGGTTTACAAGGTTGAAGCTGAAGGAAATCAGAGTGGCACCCCCAAGAGCAAAGTTGTGATTGCCGACAGTGGTGAACTTCCTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016018 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022622 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0055044 GO:0071704 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

205

Amino Acids

21.85

Weight (kDa)

9.15

Isoelectric Point (pI)

8.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	38 - 198	2.1e-47	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	17
AccB1I	GGYRCC	1 cut(s)	563
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	2 cut(s)	93, 292
AcsI	RAATTY	3 cut(s)	196, 269, 373
AcuI	CTGAAG	2 cut(s)	110, 567
AcyI	GRCGYC	1 cut(s)	14
AdeI	CACNNNGTG	1 cut(s)	323
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	259
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	3 cut(s)	259, 379, 542
AjnI	CCWGG	1 cut(s)	397
AleI	CACNNNNGTG	1 cut(s)	461
AluBI	AGCT	5 cut(s)	56, 143, 206, 382, 545
AluI	AGCT	5 cut(s)	56, 143, 206, 382, 545
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	2 cut(s)	93, 292
AoxI	GGCC	1 cut(s)	394
ApoI	RAATTY	3 cut(s)	196, 269, 373
AspS9I	GGNCC	2 cut(s)	395, 425
AsuHPI	GGTGA	3 cut(s)	320, 335, 611
AvaII	GGWCC	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	563
BanII	GRGCYC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	208
BccI	CCATC	2 cut(s)	320, 476
BcgI	CGANNNNNNTGC	4 cut(s)	57, 91, 192, 226
BciT130I	CCWGG	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	3 cut(s)	53, 320, 613
BfmI	CTRYAG	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	399
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	2 cut(s)	395, 425
BmiI	GGNNCC	4 cut(s)	49, 180, 427, 565
BmrFI	CCNGG	1 cut(s)	399
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	12
BmuI	ACTGGG	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	3 cut(s)	301, 397, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	3 cut(s)	288, 397, 479
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	3 cut(s)	301, 397, 398
BseGI	GGATG	2 cut(s)	487, 529
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseNI	ACTGG	3 cut(s)	288, 397, 479
BshFI	GGCC	1 cut(s)	396
BshNI	GGYRCC	1 cut(s)	563
BsiHKAI	GWGCWC	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	411
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	411
BsnI	GGCC	1 cut(s)	396
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	3 cut(s)	85, 156, 297
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	1 cut(s)	396
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	4 cut(s)	49, 180, 427, 565
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	2 cut(s)	93, 292
BspT107I	GGYRCC	1 cut(s)	563
BspTNI	GGTCTC	1 cut(s)	167
BsrI	ACTGG	3 cut(s)	288, 397, 479
BssECI	CCNNGG	3 cut(s)	301, 397, 398
BssMI	GATC	3 cut(s)	85, 156, 297
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	2 cut(s)	463, 596
Bst6I	CTCTTC	2 cut(s)	47, 325
BstACI	GRCGYC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	487, 529
BstKTI	GATC	3 cut(s)	88, 159, 300
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	3 cut(s)	85, 156, 297
BstNI	CCWGG	1 cut(s)	399
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	396
BtsCI	GGATG	2 cut(s)	487, 529
BtsIMutI	CAGTG	1 cut(s)	601
Cac8I	GCNNGC	1 cut(s)	141
CciI	TCATGA	1 cut(s)	294
Cfr13I	GGNCC	2 cut(s)	395, 425
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	2 cut(s)	295, 491
CviJI	RGCY	9 cut(s)	56, 139, 143, 206, 247, 382, 396, 403, 545
CviKI_1	RGCY	9 cut(s)	56, 139, 143, 206, 247, 382, 396, 403, 545
CviQI	GTAC	1 cut(s)	30
DpnI	GATC	3 cut(s)	87, 158, 299
DpnII	GATC	3 cut(s)	85, 156, 297
DraIII	CACNNNGTG	1 cut(s)	323
Eam1104I	CTCTTC	2 cut(s)	47, 325
EarI	CTCTTC	2 cut(s)	47, 325
Ecl136II	GAGCTC	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	208
Eco31I	GGTCTC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	425
Eco53kI	GAGCTC	1 cut(s)	206
Eco57I	CTGAAG	2 cut(s)	110, 567
EcoICRI	GAGCTC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	2 cut(s)	298, 494
FaiI	YATR	4 cut(s)	284, 296, 390, 492
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	2 cut(s)	294, 490
FokI	GGATG	2 cut(s)	494, 536
FriOI	GRGCYC	1 cut(s)	208
FspBI	CTAG	3 cut(s)	53, 320, 613
HaeIII	GGCC	1 cut(s)	396
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	298, 494
HinfI	GANTC	1 cut(s)	341
HphI	GGTGA	3 cut(s)	320, 335, 611
Hpy166II	GTNNAC	4 cut(s)	112, 443, 532, 602
Hpy188I	TCNGA	4 cut(s)	47, 90, 503, 558
Hpy188III	TCNNGA	5 cut(s)	124, 132, 295, 428, 516
Hpy8I	GTNNAC	4 cut(s)	112, 443, 532, 602
Hpy99I	CGWCG	2 cut(s)	16, 19
HpyAV	CCTTC	4 cut(s)	73, 85, 166, 542
HpyCH4III	ACNGT	2 cut(s)	463, 596
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	2 cut(s)	191, 213
HpySE526I	ACGT	1 cut(s)	14
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	298, 494
Kzo9I	GATC	3 cut(s)	85, 156, 297
LweI	GCATC	1 cut(s)	12
MaeI	CTAG	3 cut(s)	53, 320, 613
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	97, 463
MalI	GATC	3 cut(s)	87, 158, 299
MboI	GATC	3 cut(s)	85, 156, 297
MboII	GAAGA	3 cut(s)	34, 342, 442
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	5 cut(s)	196, 269, 345, 373, 446
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	2 cut(s)	211, 459
MnlI	CCTC	7 cut(s)	44, 50, 58, 76, 258, 299, 326
MslI	CAYNNNNRTG	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	399
NdeII	GATC	3 cut(s)	85, 156, 297
NlaIII	CATG	2 cut(s)	298, 494
NlaIV	GGNNCC	4 cut(s)	49, 180, 427, 565
NmuCI	GTSAC	2 cut(s)	97, 463
NspI	RCATGY	1 cut(s)	494
OliI	CACNNNNGTG	1 cut(s)	461
PagI	TCATGA	1 cut(s)	294
PasI	CCCWGGG	1 cut(s)	398
PciI	ACATGT	1 cut(s)	490
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PscI	ACATGT	1 cut(s)	490
Psp124BI	GAGCTC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	4 cut(s)	49, 180, 427, 565
PspPI	GGNCC	2 cut(s)	395, 425
PstI	CTGCAG	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	461
SacI	GAGCTC	1 cut(s)	208
Sau3AI	GATC	3 cut(s)	85, 156, 297
Sau96I	GGNCC	2 cut(s)	395, 425
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	208
SfaNI	GCATC	1 cut(s)	12
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	425
SmiMI	CAYNNNNRTG	1 cut(s)	461
Sse9I	AATT	5 cut(s)	196, 269, 345, 373, 446
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	3 cut(s)	53, 320, 613
SstI	GAGCTC	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	2 cut(s)	463, 596
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	4 cut(s)	7, 77, 123, 202
TaqII	GACCGA	1 cut(s)	149
TasI	AATT	5 cut(s)	196, 269, 345, 373, 446
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	2 cut(s)	97, 463
Tsp45I	GTSAC	2 cut(s)	97, 463
TspDTI	ATGAA	3 cut(s)	283, 384, 442
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	1 cut(s)	601
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	3 cut(s)	196, 269, 373
XceI	RCATGY	1 cut(s)	494
XspI	CTAG	3 cut(s)	53, 320, 613
ZraI	GACGTC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.