Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Reverse (-)

60132105 .. 60133807

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G031950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCCCAGAAGGTTGGTTTCTGCAGCAGCTCTTTTGTGGGGTTTGCTTCTCTTGGCGACATTAGTTGTCATTCTGGTACCACTCCATGATTCTTTCAATGATAAAGTCCTATCACAGCCAAACACCCTCAAAAACAAAAGTGAGATTGTTGAGGAAAGTGATGATTTGGAACAAGTGACCCACCAAGTGTTCTTCGATATCGAAATCGATGGAAAACCCATTGGTCGCATAGTCATGGGTCTCTTTGGAAAAACAGTTCCAAAAACCATAGAGAACTTTCGAGCACTTTTGCACTGTTTAACGAAGGCTTGGGTTTCAGGGGAGAAGGGAATTGGAAAGAGTATGAAACCTCTGCACTACAAAGGGAGTATATTTCATAGAGTTATTCCCAGCTTTATGATTCAGGGAGGGGATTTCACTCTTGGCGATGGAAGAGGTGGAGAATCGATTTATGGGGAAAAGTTTGCGGATGAAAACTTCAAAGCTAAGCACACTGGACCAGGTTATTTATCAATGGCAAATTCTGGCCAAGACACCAATGGATCACAGTTCTTCATCACGACTGTCAAAACTAGCTGGTCGGATGGTCACCATGTTGTATTTGGCAAGGTGCTTTCTGGAATGGACGTTGTGTACAAGGTTGAACGAGTAGGAGGATCGGATGAGATACCTACGAGTGAGGTTGTTATCAAAGACAGCGGTGCACTTCCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

238

Amino Acids

26.02

Weight (kDa)

6.45

Isoelectric Point (pI)

24.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	64 - 232	2.6e-44	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	76
AccB1I	GGYRCC	1 cut(s)	76
AciI	CCGC	2 cut(s)	467, 699
AclWI	GGATC	2 cut(s)	550, 664
AcoI	YGGCCR	1 cut(s)	526
AcsI	RAATTY	1 cut(s)	520
AdeI	CACNNNGTG	1 cut(s)	187
AfaI	GTAC	2 cut(s)	78, 635
AgsI	TTSAA	3 cut(s)	97, 481, 644
AjnI	CCWGG	1 cut(s)	499
AloI	GAACNNNNNNTCC	2 cut(s)	240, 272
AluBI	AGCT	4 cut(s)	29, 393, 485, 576
AluI	AGCT	4 cut(s)	29, 393, 485, 576
Alw21I	GWGCWC	2 cut(s)	286, 706
Alw26I	GTCTC	1 cut(s)	245
Alw44I	GTGCAC	1 cut(s)	702
AlwI	GGATC	2 cut(s)	550, 664
AoxI	GGCC	1 cut(s)	526
ApaLI	GTGCAC	1 cut(s)	702
ApeKI	GCWGC	2 cut(s)	23, 26
ApoI	RAATTY	1 cut(s)	520
Asp718I	GGTACC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	497
AsuHPI	GGTGA	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	497
BaeGI	GKGCMC	1 cut(s)	706
BalI	TGGCCA	1 cut(s)	528
BanI	GGYRCC	1 cut(s)	76
Bbv12I	GWGCWC	2 cut(s)	286, 706
BbvI	GCAGC	2 cut(s)	35, 38
BccI	CCATC	3 cut(s)	203, 422, 578
BciT130I	CCWGG	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	573
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	2 cut(s)	24, 27
BlpI	GCTNAGC	1 cut(s)	486
BlsI	GCNGC	2 cut(s)	25, 28
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	501
Bpu1102I	GCTNAGC	1 cut(s)	486
Bsa29I	ATCGAT	2 cut(s)	207, 446
BsaI	GGTCTC	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	499
BseBI	CCWGG	1 cut(s)	501
BseCI	ATCGAT	2 cut(s)	207, 446
BseGI	GGATG	3 cut(s)	475, 589, 667
BseNI	ACTGG	1 cut(s)	499
BseSI	GKGCMC	1 cut(s)	706
BseXI	GCAGC	2 cut(s)	35, 38
BseYI	CCCAGC	1 cut(s)	389
BsgI	GTGCAG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	528
BshNI	GGYRCC	1 cut(s)	76
BshVI	ATCGAT	2 cut(s)	207, 446
BsiHKAI	GWGCWC	2 cut(s)	286, 706
BsmAI	GTCTC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	528
Bso31I	GGTCTC	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	286, 706
Bsp1407I	TGTACA	1 cut(s)	633
Bsp143I	GATC	2 cut(s)	542, 656
Bsp1720I	GCTNAGC	1 cut(s)	486
BspACI	CCGC	2 cut(s)	467, 699
BspANI	GGCC	1 cut(s)	528
BspDI	ATCGAT	2 cut(s)	207, 446
BspLI	GGNNCC	1 cut(s)	78
BspMAI	CTGCAG	1 cut(s)	25
BspPI	GGATC	2 cut(s)	550, 664
BspT107I	GGYRCC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	245
BsrGI	TGTACA	1 cut(s)	633
BsrI	ACTGG	1 cut(s)	499
BssMI	GATC	2 cut(s)	542, 656
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	4 cut(s)	256, 296, 549, 565
Bst6I	CTCTTC	1 cut(s)	427
BstAUI	TGTACA	1 cut(s)	633
BstDEI	CTNAG	1 cut(s)	486
BstEII	GGTNACC	1 cut(s)	587
BstF5I	GGATG	3 cut(s)	475, 589, 667
BstKTI	GATC	2 cut(s)	545, 659
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	2 cut(s)	542, 656
BstNI	CCWGG	1 cut(s)	501
BstPI	GGTNACC	1 cut(s)	587
BstSCI	CCNGG	1 cut(s)	499
BstSFI	CTRYAG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	706
BstV1I	GCAGC	2 cut(s)	35, 38
BstXI	CCANNNNNNTGG	1 cut(s)	13
Bsu15I	ATCGAT	2 cut(s)	207, 446
BsuRI	GGCC	1 cut(s)	528
BsuTUI	ATCGAT	2 cut(s)	207, 446
BtgZI	GCGATG	1 cut(s)	441
BtsCI	GGATG	3 cut(s)	475, 589, 667
BtsIMutI	CAGTG	2 cut(s)	292, 492
Cfr13I	GGNCC	1 cut(s)	497
ClaI	ATCGAT	2 cut(s)	207, 446
CsiI	ACCWGGT	1 cut(s)	499
Csp6I	GTAC	2 cut(s)	77, 634
CviAII	CATG	3 cut(s)	86, 235, 593
CviJI	RGCY	7 cut(s)	29, 118, 308, 393, 485, 528, 576
CviKI_1	RGCY	7 cut(s)	29, 118, 308, 393, 485, 528, 576
CviQI	GTAC	2 cut(s)	77, 634
DdeI	CTNAG	1 cut(s)	486
DpnI	GATC	2 cut(s)	544, 658
DpnII	GATC	2 cut(s)	542, 656
DraIII	CACNNNGTG	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	526
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
Eco31I	GGTCTC	1 cut(s)	245
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	497
Eco91I	GGTNACC	1 cut(s)	587
EcoO65I	GGTNACC	1 cut(s)	587
EcoRII	CCWGG	1 cut(s)	499
EcoRV	GATATC	1 cut(s)	199
FaeI	CATG	3 cut(s)	89, 238, 596
FatI	CATG	3 cut(s)	85, 234, 592
Fnu4HI	GCNGC	2 cut(s)	24, 27
FokI	GGATG	3 cut(s)	482, 596, 674
Fsp4HI	GCNGC	2 cut(s)	24, 27
FspBI	CTAG	1 cut(s)	573
GluI	GCNGC	2 cut(s)	24, 27
GsaI	CCCAGC	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	528
Hin1II	CATG	3 cut(s)	89, 238, 596
HinfI	GANTC	3 cut(s)	89, 400, 443
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	2 cut(s)	634, 704
Hpy188I	TCNGA	2 cut(s)	583, 661
Hpy188III	TCNNGA	2 cut(s)	559, 618
Hpy8I	GTNNAC	2 cut(s)	634, 704
HpyAV	CCTTC	3 cut(s)	3, 298, 319
HpyCH4III	ACNGT	4 cut(s)	256, 296, 549, 565
HpyCH4IV	ACGT	1 cut(s)	627
HpyCH4V	TGCA	4 cut(s)	23, 292, 355, 704
HpyF3I	CTNAG	1 cut(s)	486
HpySE526I	ACGT	1 cut(s)	627
Hsp92II	CATG	3 cut(s)	89, 238, 596
KpnI	GGTACC	1 cut(s)	80
Kzo9I	GATC	2 cut(s)	542, 656
Lsp1109I	GCAGC	2 cut(s)	35, 38
MabI	ACCWGGT	1 cut(s)	499
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	2 cut(s)	175, 587
MalI	GATC	2 cut(s)	544, 658
MboI	GATC	2 cut(s)	542, 656
MboII	GAAGA	3 cut(s)	184, 444, 544
MhlI	GDGCHC	2 cut(s)	286, 706
MlsI	TGGCCA	1 cut(s)	528
MluCI	AATT	2 cut(s)	330, 520
MluNI	TGGCCA	1 cut(s)	528
MmeI	TCCRAC	1 cut(s)	561
MnlI	CCTC	7 cut(s)	137, 145, 360, 401, 428, 647, 673
Mox20I	TGGCCA	1 cut(s)	528
MscI	TGGCCA	1 cut(s)	528
MseI	TTAA	1 cut(s)	299
MslI	CAYNNNNRTG	1 cut(s)	233
Msp20I	TGGCCA	1 cut(s)	528
MspA1I	CMGCKG	1 cut(s)	699
MspR9I	CCNGG	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	501
NdeII	GATC	2 cut(s)	542, 656
NlaIII	CATG	3 cut(s)	89, 238, 596
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	2 cut(s)	175, 587
PfeI	GAWTC	3 cut(s)	89, 400, 443
PkrI	GCNGC	2 cut(s)	25, 28
Psp6I	CCWGG	1 cut(s)	499
PspEI	GGTNACC	1 cut(s)	587
PspFI	CCCAGC	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	497
PstI	CTGCAG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	78, 635
RsaNI	GTAC	2 cut(s)	77, 634
RseI	CAYNNNNRTG	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	2 cut(s)	24, 27
Sau3AI	GATC	2 cut(s)	542, 656
Sau96I	GGNCC	1 cut(s)	497
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	2 cut(s)	286, 706
SexAI	ACCWGGT	1 cut(s)	499
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	497
SmiMI	CAYNNNNRTG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	330, 520
SsiI	CCGC	2 cut(s)	467, 699
SspMI	CTAG	1 cut(s)	573
StyD4I	CCNGG	1 cut(s)	499
TaaI	ACNGT	4 cut(s)	256, 296, 549, 565
TaiI	ACGT	1 cut(s)	630
TaqI	TCGA	5 cut(s)	195, 201, 207, 280, 446
TasI	AATT	2 cut(s)	330, 520
TatI	WGTACW	1 cut(s)	633
TfiI	GAWTC	3 cut(s)	89, 400, 443
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TscAI	CASTG	2 cut(s)	299, 499
TseFI	GTSAC	2 cut(s)	175, 587
TseI	GCWGC	2 cut(s)	23, 26
Tsp45I	GTSAC	2 cut(s)	175, 587
TspDTI	ATGAA	4 cut(s)	359, 365, 486, 544
TspRI	CASTG	2 cut(s)	299, 499
VneI	GTGCAC	1 cut(s)	702
VpaK11BI	GGWCC	1 cut(s)	497
XapI	RAATTY	1 cut(s)	520
XcmI	CCANNNNNNNNNTGG	2 cut(s)	536, 599
XspI	CTAG	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.