Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Reverse (-)

8316910 .. 8318955

Gene Structure 2046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00287260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCCCAGAAGGTTGGTTTCTGCCGCAGCTCTTTTGTGGGGTTTGCTTCTCTTGGCGACATTAGTTGTCATTCTGAATCGATTTAGCAATGATAAAGTCCTATCAGAGCCAAACACCCTCAAAAGCAAAAGTGAGATTGTTGAGGAAAGTGATGATCTGGAACAAGTCACCCACCAAGTTTTCTTCGACATCGAAATCGATGGAAAACCCATTGGTCGCATAGTCATGGGCCTTTTTGGAAAAACAGTTCCAAAAACCATAGAGAACTTTCGAGCACTATGCACTGGGGAGAAGGGAATTGGAAAGAGTATGAAACCTCTGCACTACAAAGGGAGTATATTTCATAGAATTATTCCCAGCTTTATGATTCAGGGAGGATTTCACTCTTGGCGATGGAAGAGGTGGAGAATCTATTTATGGGGAAAAGTTTGCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

145

Amino Acids

16.65

Weight (kDa)

9.89

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	61 - 127	3.3e-15	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	24
AloI	GAACNNNNNNTCC	2 cut(s)	231, 263
AluBI	AGCT	2 cut(s)	29, 360
AluI	AGCT	2 cut(s)	29, 360
Alw21I	GWGCWC	1 cut(s)	277
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	2 cut(s)	194, 387
BcgI	CGANNNNNNTGC	2 cut(s)	261, 295
BisI	GCNGC	2 cut(s)	24, 27
BlsI	GCNGC	2 cut(s)	25, 28
BmgT120I	GGNCC	1 cut(s)	229
BmrI	ACTGGG	1 cut(s)	294
BmuI	ACTGGG	1 cut(s)	294
Bsa29I	ATCGAT	2 cut(s)	79, 198
Bse1I	ACTGG	1 cut(s)	289
Bse3DI	GCAATG	1 cut(s)	94
BseCI	ATCGAT	2 cut(s)	79, 198
BseMI	GCAATG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	289
BseXI	GCAGC	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	356
BsgI	GTGCAG	1 cut(s)	305
BshFI	GGCC	1 cut(s)	231
BshVI	ATCGAT	2 cut(s)	79, 198
BsiHKAI	GWGCWC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	231
BspDI	ATCGAT	2 cut(s)	79, 198
BsrDI	GCAATG	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	289
BssMI	GATC	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	392
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	38
BstXI	CCANNNNNNTGG	1 cut(s)	13
Bsu15I	ATCGAT	2 cut(s)	79, 198
BsuRI	GGCC	1 cut(s)	231
BsuTUI	ATCGAT	2 cut(s)	79, 198
BtgZI	GCGATG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	229
ClaI	ATCGAT	2 cut(s)	79, 198
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	4 cut(s)	29, 109, 231, 360
CviKI_1	RGCY	4 cut(s)	29, 109, 231, 360
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
FaeI	CATG	1 cut(s)	229
FaiI	YATR	9 cut(s)	221, 227, 260, 280, 311, 338, 345, 365, 418
FatI	CATG	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	24, 27
Fsp4HI	GCNGC	2 cut(s)	24, 27
GluI	GCNGC	2 cut(s)	24, 27
GsaI	CCCAGC	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	229
HinfI	GANTC	3 cut(s)	76, 367, 408
HphI	GGTGA	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	75, 106
Hpy188III	TCNNGA	1 cut(s)	158
HpyAV	CCTTC	2 cut(s)	3, 286
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	3 cut(s)	282, 322, 432
Hsp92II	CATG	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	154
LpnPI	CCDG	5 cut(s)	19, 143, 270, 356, 370
Lsp1109I	GCAGC	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	2 cut(s)	175, 409
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	2 cut(s)	297, 348
MnlI	CCTC	5 cut(s)	128, 136, 327, 368, 393
MslI	CAYNNNNRTG	1 cut(s)	224
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	166
PfeI	GAWTC	3 cut(s)	76, 367, 408
PkrI	GCNGC	2 cut(s)	25, 28
PspFI	CCCAGC	1 cut(s)	356
PspPI	GGNCC	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	224
SatI	GCNGC	2 cut(s)	24, 27
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	5 cut(s)	14, 31, 319, 362, 404
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	297, 348
SsiI	CCGC	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	5 cut(s)	79, 186, 192, 198, 271
TasI	AATT	2 cut(s)	297, 348
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	3 cut(s)	76, 367, 408
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	2 cut(s)	326, 332
TspRI	CASTG	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.