Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Reverse (-)

75424038 .. 75425460

Gene Structure 1423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036059

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGTCTCTTCGGGAAGGCTGTTCCTAAGACGGCAGAAAATTTCCGAGCTCTTTGCACAGGGGAGAAAGGCATTGGAAAGAGCGGAAAACCTCTCCATTACAAGGGTAGCAAATTCCACAGGATTATTCCCAGCTTCATGCTTCAGGGAGGTGATTTCACTCTCGGTGATGGAAGAGGTGGAGAATCAATTTATGGAGAGAAGTTTGCTGATGAGAATTTCAAGCTGAAGCATACTGGACCAGGGCTTTTGTCAATGGCAAATGCTGGCCCAGACACCAATGGTTCACAATTCTTCATCACCACTGTGACAACTAGCTGGTTGGATGGCAGGCATGTTGTATTTGGAAAGGTGCTGTCTGGCATGGATGTGGTTTACAAGGTTGAAGCTGAAGGAAGTCAGGGTGGAACACCGAAGAGCAAAGTTGTGATCGTTGACAGCGGCGAACTTCCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016018 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022622 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0055044 GO:0071704 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

153

Amino Acids

16.14

Weight (kDa)

8.99

Isoelectric Point (pI)

8.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	2 - 147	3e-44	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	84
AciI	CCGC	2 cut(s)	84, 441
AcsI	RAATTY	3 cut(s)	40, 113, 217
AcuI	CTGAAG	3 cut(s)	128, 248, 411
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	2 cut(s)	223, 386
AjnI	CCWGG	1 cut(s)	241
AleI	CACNNNNGTG	1 cut(s)	305
AluBI	AGCT	5 cut(s)	50, 135, 226, 318, 389
AluI	AGCT	5 cut(s)	50, 135, 226, 318, 389
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	11
AoxI	GGCC	1 cut(s)	268
ApoI	RAATTY	3 cut(s)	40, 113, 217
AspS9I	GGNCC	2 cut(s)	239, 269
AsuHPI	GGTGA	3 cut(s)	164, 179, 292
AvaII	GGWCC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	52
BccI	CCATC	2 cut(s)	164, 320
BceAI	ACGGC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	36, 70
BciT130I	CCWGG	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	1 cut(s)	315
BisI	GCNGC	1 cut(s)	442
BlsI	GCNGC	1 cut(s)	443
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	2 cut(s)	239, 269
BmrFI	CCNGG	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	2 cut(s)	331, 373
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	241
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	11
BsnI	GGCC	1 cut(s)	270
Bso31I	GGTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	1 cut(s)	429
BspACI	CCGC	2 cut(s)	84, 441
BspANI	GGCC	1 cut(s)	270
BspQI	GCTCTTC	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	11
BsrBI	CCGCTC	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	3 cut(s)	14, 169, 410
BstC8I	GCNNGC	2 cut(s)	268, 332
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	331, 373
BstKTI	GATC	1 cut(s)	432
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	429
BstNI	CCWGG	1 cut(s)	243
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	331, 373
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	2 cut(s)	268, 332
Cfr13I	GGNCC	2 cut(s)	239, 269
CviAII	CATG	3 cut(s)	139, 335, 364
CviJI	RGCY	8 cut(s)	20, 50, 135, 226, 247, 270, 318, 389
CviKI_1	RGCY	8 cut(s)	20, 50, 135, 226, 247, 270, 318, 389
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	1 cut(s)	431
DpnII	GATC	1 cut(s)	429
Eam1104I	CTCTTC	3 cut(s)	14, 169, 410
EarI	CTCTTC	3 cut(s)	14, 169, 410
Ecl136II	GAGCTC	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	239
Eco53kI	GAGCTC	1 cut(s)	50
Eco57I	CTGAAG	3 cut(s)	128, 248, 411
EcoICRI	GAGCTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	52
FaeI	CATG	3 cut(s)	142, 338, 367
FaiI	YATR	5 cut(s)	140, 195, 234, 336, 365
FatI	CATG	3 cut(s)	138, 334, 363
Fnu4HI	GCNGC	1 cut(s)	442
FokI	GGATG	2 cut(s)	338, 380
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	442
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	1 cut(s)	442
GsaI	CCCAGC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	270
Hin1II	CATG	3 cut(s)	142, 338, 367
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	1 cut(s)	185
HphI	GGTGA	3 cut(s)	164, 179, 292
Hpy166II	GTNNAC	3 cut(s)	287, 376, 436
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	1 cut(s)	13
Hpy8I	GTNNAC	3 cut(s)	287, 376, 436
HpyAV	CCTTC	2 cut(s)	10, 386
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	1 cut(s)	57
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	142, 338, 367
Kzo9I	GATC	1 cut(s)	429
LguI	GCTCTTC	1 cut(s)	410
MaeI	CTAG	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	1 cut(s)	431
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	1 cut(s)	429
MboII	GAAGA	3 cut(s)	186, 286, 427
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	5 cut(s)	40, 113, 189, 217, 290
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	3 cut(s)	102, 143, 170
MseI	TTAA	1 cut(s)	457
MslI	CAYNNNNRTG	2 cut(s)	305, 368
MspA1I	CMGCKG	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	243
NdeII	GATC	1 cut(s)	429
NlaIII	CATG	3 cut(s)	142, 338, 367
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	338
OliI	CACNNNNGTG	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	443
Psp124BI	GAGCTC	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	241
PspPI	GGNCC	2 cut(s)	239, 269
RseI	CAYNNNNRTG	2 cut(s)	305, 368
SacI	GAGCTC	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	457
SatI	GCNGC	1 cut(s)	442
Sau3AI	GATC	1 cut(s)	429
Sau96I	GGNCC	2 cut(s)	239, 269
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	52
SinI	GGWCC	1 cut(s)	239
SmiMI	CAYNNNNRTG	2 cut(s)	305, 368
Sse9I	AATT	5 cut(s)	40, 113, 189, 217, 290
SsiI	CCGC	2 cut(s)	84, 441
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	307
TasI	AATT	5 cut(s)	40, 113, 189, 217, 290
TauI	GCSGC	1 cut(s)	444
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	457
Tru9I	TTAA	1 cut(s)	457
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	127, 286
TspRI	CASTG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	239
XapI	RAATTY	3 cut(s)	40, 113, 217
XceI	RCATGY	1 cut(s)	338
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.