Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Reverse (-)

75477970 .. 75479387

Gene Structure 1418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036069

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGGTCTCTTCGGGAAGGCTGTTCCTAAGACGGCAGAAAATTTCCGAGCTCTTTGCACAGGGGAGAAAGGCATTGGAAAGAGCGGAAAACCTCTCCATTACAAGGGTAGCAAATTCCACAGGATTATTCCCAGCTTCATGCTTCAGGGAGCATACTGGACCAGGGCTTTGTCAATGGCAAATGCTGGCCCAGACACCAATGGTTCACAATTCTTCATCACCACTGTGACAACTAGCTGGTTGGATGGCAGGCATGTTGTATTTGGAAAGGTGCTGTCTGGCATGGATGTGGTTTACAAGGTTGAAGCTGAAGGAAGTCAGGGTGGAACACCGAAGTGCAAAGTTGTGATCGTTGACAGCGGCGAACTTCCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016018 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022622 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0055044 GO:0071704 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

126

Amino Acids

13.41

Weight (kDa)

9.52

Isoelectric Point (pI)

10.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	2 - 50	1.2e-10	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Pro_isomerase	PF00160	56 - 119	4.7e-19	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	84
AciI	CCGC	2 cut(s)	84, 360
AcsI	RAATTY	2 cut(s)	40, 113
AcuI	CTGAAG	2 cut(s)	128, 330
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	161
AleI	CACNNNNGTG	2 cut(s)	224, 334
AluBI	AGCT	4 cut(s)	50, 135, 237, 308
AluI	AGCT	4 cut(s)	50, 135, 237, 308
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	11
AoxI	GGCC	1 cut(s)	187
ApoI	RAATTY	2 cut(s)	40, 113
ArsI	GACNNNNNNTTYG	2 cut(s)	151, 183
AspS9I	GGNCC	2 cut(s)	159, 188
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	52
BccI	CCATC	1 cut(s)	239
BceAI	ACGGC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	36, 70
BciT130I	CCWGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	1 cut(s)	234
BisI	GCNGC	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	362
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	159, 188
BmrFI	CCNGG	1 cut(s)	163
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	2 cut(s)	250, 292
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	161
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	11
BsnI	GGCC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	1 cut(s)	348
BspACI	CCGC	2 cut(s)	84, 360
BspANI	GGCC	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	11
BsrBI	CCGCTC	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	187, 251
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	250, 292
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	348
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	250, 292
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	2 cut(s)	187, 251
Cfr13I	GGNCC	2 cut(s)	159, 188
CviAII	CATG	3 cut(s)	139, 254, 283
CviJI	RGCY	7 cut(s)	20, 50, 135, 167, 189, 237, 308
CviKI_1	RGCY	7 cut(s)	20, 50, 135, 167, 189, 237, 308
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Ecl136II	GAGCTC	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	50
Eco57I	CTGAAG	2 cut(s)	128, 330
EcoICRI	GAGCTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	52
FaeI	CATG	3 cut(s)	142, 257, 286
FaiI	YATR	4 cut(s)	140, 154, 255, 284
FatI	CATG	3 cut(s)	138, 253, 282
Fnu4HI	GCNGC	1 cut(s)	361
FokI	GGATG	2 cut(s)	257, 299
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	361
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	1 cut(s)	361
GsaI	CCCAGC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	189
Hin1II	CATG	3 cut(s)	142, 257, 286
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	3 cut(s)	206, 295, 355
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	1 cut(s)	13
Hpy8I	GTNNAC	3 cut(s)	206, 295, 355
HpyAV	CCTTC	2 cut(s)	10, 305
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	2 cut(s)	57, 339
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	142, 257, 286
Kzo9I	GATC	1 cut(s)	348
LmnI	GCTCC	1 cut(s)	149
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	1 cut(s)	350
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	1 cut(s)	348
MboII	GAAGA	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	3 cut(s)	40, 113, 209
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	1 cut(s)	102
MseI	TTAA	1 cut(s)	376
MslI	CAYNNNNRTG	3 cut(s)	224, 287, 334
MspA1I	CMGCKG	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	3 cut(s)	142, 257, 286
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	257
OliI	CACNNNNGTG	2 cut(s)	224, 334
PkrI	GCNGC	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	161
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	161
PspPI	GGNCC	2 cut(s)	159, 188
RseI	CAYNNNNRTG	3 cut(s)	224, 287, 334
SacI	GAGCTC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	376
SatI	GCNGC	1 cut(s)	361
Sau3AI	GATC	1 cut(s)	348
Sau96I	GGNCC	2 cut(s)	159, 188
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	7 cut(s)	52, 94, 137, 239, 273, 303, 310
SinI	GGWCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	3 cut(s)	224, 287, 334
Sse9I	AATT	3 cut(s)	40, 113, 209
SsiI	CCGC	2 cut(s)	84, 360
SspMI	CTAG	1 cut(s)	234
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	226
TasI	AATT	3 cut(s)	40, 113, 209
TauI	GCSGC	1 cut(s)	363
Tru1I	TTAA	1 cut(s)	376
Tru9I	TTAA	1 cut(s)	376
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	127, 205
TspRI	CASTG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	2 cut(s)	40, 113
XceI	RCATGY	1 cut(s)	257
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.