Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Reverse (-)

29879243 .. 29881526

Gene Structure 2284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1221700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGACGACCGGAAAAAGGCTGGTTTCGGCGGCGGCTCTCTTGTGGGTCCTACTCCTCTTCGGCACTTTGGTCTTCATCCTGACTCGACTCGGCGACGACGGAGCTCTGAACGAGCCGAATGTTGTCAAAAGCGAGCTCCGTGAGGAGAACGATTTGGAGCAAGTGACTCACAAAGTGTACTTCGACATCGAAATTAATGGGAAACCCATTGGTCGCATTGTGATGGGTCTCTTTGGAAAAACAGTTCCTAAAACCATAGAGAATTTTCGAGCGCTTTGCACGGGGGAAAAAGGAACTGGAACGAGTAGGAAGCCTCTTCACTACAAAGGCAGTACATTTCATAGGATTATCCCCAGCTTTATGATACAGGGAGGTGATTTCACTCTCGGTGATGGACGAGGTGGAGAATCAATATACGGTGATAAGTTTGCAGATGAAAACTTCAAACTAAAGCACACCGGGCCAGGTATTCTTTCTATGGCAAATGCTGGGCCAGACACCAACGGATCGCAATTCTTCATTACAACAGTCAAAACCGGTTGGTTGGATGGGCGGCATGTCGTATTTGGCAAGGTGCTTTCCGGGATGGACGTAGTGTCCAAAGTCGAAGAAGTAGGAGGCAAGGATGGGGTACCTAGGAGCAAGGTTGTCATCACCAACAGTGGCGAACTTCCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

227

Amino Acids

24.49

Weight (kDa)

8.59

Isoelectric Point (pI)

20.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	60 - 221	5e-48	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	631
AccB1I	GGYRCC	1 cut(s)	631
AciI	CCGC	3 cut(s)	29, 32, 553
AclWI	GGATC	1 cut(s)	514
AcsI	RAATTY	1 cut(s)	262
AdeI	CACNNNGTG	1 cut(s)	175
AfaI	GTAC	3 cut(s)	179, 334, 633
AfeI	AGCGCT	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgeI	ACCGGT	1 cut(s)	536
AgsI	TTSAA	1 cut(s)	445
AhdI	GACNNNNNGTC	1 cut(s)	595
AjnI	CCWGG	1 cut(s)	463
AloI	GAACNNNNNNTCC	2 cut(s)	228, 260
AluBI	AGCT	3 cut(s)	104, 136, 357
AluI	AGCT	3 cut(s)	104, 136, 357
Alw21I	GWGCWC	2 cut(s)	106, 138
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	514
Aor51HI	AGCGCT	1 cut(s)	273
AoxI	GGCC	2 cut(s)	461, 491
ApoI	RAATTY	1 cut(s)	262
AseI	ATTAAT	1 cut(s)	195
AsiGI	ACCGGT	1 cut(s)	536
Asp718I	GGTACC	1 cut(s)	631
AspA2I	CCTAGG	1 cut(s)	635
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	3 cut(s)	46, 461, 491
AsuC2I	CCSGG	2 cut(s)	460, 583
AsuHPI	GGTGA	4 cut(s)	386, 401, 431, 646
AvaII	GGWCC	1 cut(s)	46
AvrII	CCTAGG	1 cut(s)	635
BanI	GGYRCC	1 cut(s)	631
BanII	GRGCYC	2 cut(s)	106, 138
BbsI	GAAGAC	1 cut(s)	64
Bbv12I	GWGCWC	2 cut(s)	106, 138
BccI	CCATC	5 cut(s)	217, 386, 542, 580, 620
BcgI	CGANNNNNNTGC	2 cut(s)	258, 292
BciT130I	CCWGG	1 cut(s)	465
BcnI	CCSGG	2 cut(s)	460, 583
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	636
BfoI	RGCGCY	1 cut(s)	275
BisI	GCNGC	3 cut(s)	30, 33, 554
BlnI	CCTAGG	1 cut(s)	635
BlsI	GCNGC	3 cut(s)	31, 34, 555
Bme1390I	CCNGG	3 cut(s)	460, 465, 583
Bme18I	GGWCC	1 cut(s)	46
BmeRI	GACNNNNNGTC	1 cut(s)	595
BmgT120I	GGNCC	3 cut(s)	46, 461, 491
BmiI	GGNNCC	2 cut(s)	47, 633
BmrFI	CCNGG	3 cut(s)	460, 465, 583
BpiI	GAAGAC	1 cut(s)	64
BpuMI	CCSGG	2 cut(s)	460, 583
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	635
BsaWI	WCCGGW	2 cut(s)	8, 536
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse118I	RCCGGY	1 cut(s)	536
Bse1I	ACTGG	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	635
BseGI	GGATG	4 cut(s)	75, 553, 591, 631
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	2 cut(s)	44, 158
BseYI	CCCAGC	2 cut(s)	353, 488
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	463, 493
BshNI	GGYRCC	1 cut(s)	631
BshTI	ACCGGT	1 cut(s)	536
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	2 cut(s)	106, 138
BsiSI	CCGG	4 cut(s)	9, 459, 537, 582
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	463, 493
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	106, 138
Bsp143I	GATC	1 cut(s)	506
BspACI	CCGC	3 cut(s)	29, 32, 553
BspANI	GGCC	2 cut(s)	463, 493
BspLI	GGNNCC	2 cut(s)	47, 633
BspPI	GGATC	1 cut(s)	514
BspT107I	GGYRCC	1 cut(s)	631
BspTNI	GGTCTC	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	536
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	536
BssECI	CCNNGG	1 cut(s)	635
BssMI	GATC	1 cut(s)	506
BssT1I	CCWWGG	1 cut(s)	635
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	4 cut(s)	244, 419, 529, 662
Bst6I	CTCTTC	2 cut(s)	62, 321
BstC8I	GCNNGC	1 cut(s)	134
BstF5I	GGATG	4 cut(s)	75, 553, 591, 631
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	1 cut(s)	509
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	1 cut(s)	506
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	460
BstNI	CCWGG	1 cut(s)	465
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	3 cut(s)	458, 463, 581
BstV2I	GAAGAC	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	463, 493
BtsCI	GGATG	4 cut(s)	75, 553, 591, 631
BtsIMutI	CAGTG	1 cut(s)	667
Cac8I	GCNNGC	1 cut(s)	134
CfoI	GCGC	1 cut(s)	274
Cfr10I	RCCGGY	1 cut(s)	536
Cfr13I	GGNCC	3 cut(s)	46, 461, 491
Csp6I	GTAC	3 cut(s)	178, 333, 632
CspAI	ACCGGT	1 cut(s)	536
CviAII	CATG	1 cut(s)	557
CviJI	RGCY	9 cut(s)	19, 35, 104, 115, 136, 313, 357, 463, 493
CviKI_1	RGCY	9 cut(s)	19, 35, 104, 115, 136, 313, 357, 463, 493
CviQI	GTAC	3 cut(s)	178, 333, 632
DpnI	GATC	1 cut(s)	508
DpnII	GATC	1 cut(s)	506
DraIII	CACNNNGTG	1 cut(s)	175
DriI	GACNNNNNGTC	1 cut(s)	595
Eam1104I	CTCTTC	2 cut(s)	62, 321
Eam1105I	GACNNNNNGTC	1 cut(s)	595
EarI	CTCTTC	2 cut(s)	62, 321
Ecl136II	GAGCTC	2 cut(s)	104, 136
Eco130I	CCWWGG	1 cut(s)	635
Eco24I	GRGCYC	2 cut(s)	106, 138
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	46
Eco47III	AGCGCT	1 cut(s)	273
Eco53kI	GAGCTC	2 cut(s)	104, 136
EcoICRI	GAGCTC	2 cut(s)	104, 136
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	635
EcoT38I	GRGCYC	2 cut(s)	106, 138
ErhI	CCWWGG	1 cut(s)	635
FaeI	CATG	1 cut(s)	560
FaiI	YATR	6 cut(s)	257, 342, 362, 415, 479, 558
FatI	CATG	1 cut(s)	556
Fnu4HI	GCNGC	3 cut(s)	30, 33, 554
FokI	GGATG	4 cut(s)	62, 560, 598, 638
FriOI	GRGCYC	2 cut(s)	106, 138
Fsp4HI	GCNGC	3 cut(s)	30, 33, 554
FspBI	CTAG	1 cut(s)	636
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	3 cut(s)	30, 33, 554
GsaI	CCCAGC	2 cut(s)	357, 492
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	2 cut(s)	463, 493
HapII	CCGG	4 cut(s)	9, 459, 537, 582
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	1 cut(s)	560
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HinfI	GANTC	4 cut(s)	82, 87, 166, 407
HpaII	CCGG	4 cut(s)	9, 459, 537, 582
HphI	GGTGA	4 cut(s)	386, 401, 431, 646
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	2 cut(s)	98, 101
HpyCH4III	ACNGT	4 cut(s)	244, 419, 529, 662
HpyCH4IV	ACGT	1 cut(s)	591
HpyCH4V	TGCA	2 cut(s)	279, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	460
HpySE526I	ACGT	1 cut(s)	591
Hsp92II	CATG	1 cut(s)	560
HspAI	GCGC	1 cut(s)	272
KpnI	GGTACC	1 cut(s)	635
Kzo9I	GATC	1 cut(s)	506
LmnI	GCTCC	4 cut(s)	101, 141, 157, 639
MaeI	CTAG	1 cut(s)	636
MaeII	ACGT	1 cut(s)	591
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	508
MboI	GATC	1 cut(s)	506
MboII	GAAGA	5 cut(s)	49, 64, 308, 508, 620
MhlI	GDGCHC	2 cut(s)	106, 138
MluCI	AATT	3 cut(s)	192, 262, 512
MlyI	GAGTC	3 cut(s)	76, 81, 160
MmeI	TCCRAC	1 cut(s)	525
MnlI	CCTC	6 cut(s)	65, 136, 324, 365, 392, 611
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	221
MspI	CCGG	4 cut(s)	9, 459, 537, 582
MspR9I	CCNGG	3 cut(s)	460, 465, 583
MvaI	CCWGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	1 cut(s)	460
NciI	CCSGG	2 cut(s)	460, 583
NdeII	GATC	1 cut(s)	506
NlaIII	CATG	1 cut(s)	560
NlaIV	GGNNCC	2 cut(s)	47, 633
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	163
NspI	RCATGY	1 cut(s)	560
PfeI	GAWTC	1 cut(s)	407
PfoI	TCCNGGA	1 cut(s)	581
PinAI	ACCGGT	1 cut(s)	536
PkrI	GCNGC	3 cut(s)	31, 34, 555
PleI	GAGTC	3 cut(s)	76, 81, 160
PpsI	GAGTC	3 cut(s)	76, 81, 160
PpuMI	RGGWCCY	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	195
Psp124BI	GAGCTC	2 cut(s)	106, 138
Psp5II	RGGWCCY	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	463
PspFI	CCCAGC	2 cut(s)	353, 488
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	2 cut(s)	47, 633
PspPI	GGNCC	3 cut(s)	46, 461, 491
PspPPI	RGGWCCY	1 cut(s)	46
RsaI	GTAC	3 cut(s)	179, 334, 633
RsaNI	GTAC	3 cut(s)	178, 333, 632
RseI	CAYNNNNRTG	1 cut(s)	221
SacI	GAGCTC	2 cut(s)	106, 138
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	3 cut(s)	30, 33, 554
Sau3AI	GATC	1 cut(s)	506
Sau96I	GGNCC	3 cut(s)	46, 461, 491
SchI	GAGTC	3 cut(s)	76, 81, 160
ScrFI	CCNGG	3 cut(s)	460, 465, 583
SduI	GDGCHC	2 cut(s)	106, 138
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	221
Sse9I	AATT	3 cut(s)	192, 262, 512
SsiI	CCGC	3 cut(s)	29, 32, 553
SspMI	CTAG	1 cut(s)	636
SstI	GAGCTC	2 cut(s)	106, 138
StyD4I	CCNGG	3 cut(s)	458, 463, 581
StyI	CCWWGG	1 cut(s)	635
TaaI	ACNGT	4 cut(s)	244, 419, 529, 662
TaiI	ACGT	1 cut(s)	594
TaqI	TCGA	5 cut(s)	85, 183, 189, 268, 606
TasI	AATT	3 cut(s)	192, 262, 512
TatI	WGTACW	2 cut(s)	177, 332
TauI	GCSGC	3 cut(s)	32, 35, 556
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	667
TseFI	GTSAC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	4 cut(s)	64, 329, 450, 508
TspGWI	ACGGA	3 cut(s)	114, 128, 519
TspRI	CASTG	1 cut(s)	667
VpaK11BI	GGWCC	1 cut(s)	46
VspI	ATTAAT	1 cut(s)	195
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	560
XmaJI	CCTAGG	1 cut(s)	635
XspI	CTAG	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.