Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Forward (+)

54718069 .. 54718893

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0398300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCGGCGGTGGCTCCGTCAGTAGAAGAGGCCGTGGTGACTCTGCTTGGTGGAGAGGATGCTCTTCAGGATTCTTTTTTCTATCTATGTGGCCGACTTCTGTCCAAGAAGGCGGTGGTGCTTTCGTCGTTCTCGGCGGTGATCTCCAATGTTTGGGGATTGAAGGAGAGGGTTTTGATCCGGCAGGAGGAGGCGGATATATTTGTCTTCCAATTTAAGGAGATGGAGGTGAAGAATCGAGTACTCTCGGGGGGTCCTTGGTTCTACAACAACTCTATGCTGTTGCTGGCAGATTATGACGGAGTCTCTGCCCTCGAAGCGGCACTGTTGCATCTCCTTGAGGTGTGGGTGGCTGTGAAAGGGCTGCAGATTGCGATGCGGAATGAGAAAGCCCTAACCCTAATCGGACGGGCTTTGGGGGACTTTGTTCGAGTTGATCAGGGGGCGGTGCTGAAAAAGGATCCCGTACAGAGGATCCGTGTGGTTCATGATGTTCGCCGGAGAATCTTGGCACGACGGAGGTTTAACTTTTCCTCGGTTGTTTTAGTGATGGTGGAGTTGCAATATGAGAAGTGCCTTGGGCTGTGTGCAGCTTGTGGTCTTTTCGGCCATGGGGGTGGTCCATGTGACGGGAGGTTGGCGGTGGAGCCGCTCGGGCTGGTGGTGCAGGGTGAGGCATCGAACCGGGAGGGCCTGGGTTCGACGTTCGGACAGCAAGCTTCTGTGGCGGCGGTCGTGGGGTCGGAGGGGCTCTCTCTGGTGCCAGAGGTGTTGGGTCTGGTGACGGAGGCGGCTGGAGGGCAGGTGGTGACGGCGGGTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016018 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022622 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0055044 GO:0071704 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

274

Amino Acids

29.34

Weight (kDa)

6.0

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	29 - 100	1.7e-10	Domain of unknown function (DUF4283)
zf-CCHC_4	PF14392	164 - 210	1.7e-08	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	793
Acc36I	ACCTGC	1 cut(s)	793
AccB1I	GGYRCC	1 cut(s)	760
AccB7I	CCANNNNNTGG	1 cut(s)	153
AccBSI	CCGCTC	1 cut(s)	652
AclWI	GGATC	5 cut(s)	172, 455, 468, 469, 482
AcoI	YGGCCR	2 cut(s)	91, 607
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	2 cut(s)	243, 468
AfiI	CCNNNNNNNGG	6 cut(s)	153, 187, 217, 319, 471, 629
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	693
AluBI	AGCT	2 cut(s)	593, 719
AluI	AGCT	2 cut(s)	593, 719
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	5 cut(s)	172, 455, 468, 469, 482
Ama87I	CYCGRG	2 cut(s)	247, 653
AoxI	GGCC	4 cut(s)	30, 91, 607, 691
ApeKI	GCWGC	2 cut(s)	364, 590
AspS9I	GGNCC	3 cut(s)	254, 620, 691
AsuC2I	CCSGG	1 cut(s)	686
AsuHPI	GGTGA	6 cut(s)	49, 151, 241, 683, 793, 820
AvaI	CYCGRG	2 cut(s)	247, 653
AvaII	GGWCC	2 cut(s)	254, 620
BamHI	GGATCC	2 cut(s)	460, 474
BanI	GGYRCC	1 cut(s)	760
BanII	GRGCYC	1 cut(s)	753
BbsI	GAAGAC	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	351, 602
BccI	CCATC	2 cut(s)	217, 544
BceAI	ACGGC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	695
BclI	TGATCA	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	686
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	1 cut(s)	823
BfmI	CTRYAG	1 cut(s)	365
BfuAI	ACCTGC	1 cut(s)	793
BglI	GCCNNNNNGGC	1 cut(s)	655
BisI	GCNGC	7 cut(s)	6, 321, 365, 591, 650, 729, 792
BlsI	GCNGC	7 cut(s)	7, 322, 366, 592, 651, 730, 793
BmcAI	AGTACT	1 cut(s)	243
Bme1390I	CCNGG	2 cut(s)	686, 695
Bme18I	GGWCC	2 cut(s)	254, 620
BmeT110I	CYCGRG	2 cut(s)	247, 653
BmgT120I	GGNCC	3 cut(s)	254, 620, 691
BmiI	GGNNCC	6 cut(s)	15, 255, 462, 476, 648, 762
BmrFI	CCNGG	2 cut(s)	686, 695
BmsI	GCATC	4 cut(s)	49, 340, 366, 686
BoxI	GACNNNNGTC	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	199
BplI	GAGNNNNNCTC	2 cut(s)	737, 769
BpmI	CTGGAG	1 cut(s)	816
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	686
BsaJI	CCNNGG	6 cut(s)	33, 257, 534, 577, 610, 694
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	6 cut(s)	153, 187, 217, 319, 471, 629
BseBI	CCWGG	1 cut(s)	695
BseDI	CCNNGG	6 cut(s)	33, 257, 534, 577, 610, 694
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	6 cut(s)	153, 187, 217, 319, 471, 629
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	351, 602
BsgI	GTGCAG	2 cut(s)	609, 686
Bsh1285I	CGRYCG	1 cut(s)	735
BshFI	GGCC	4 cut(s)	32, 93, 609, 693
BshNI	GGYRCC	1 cut(s)	760
BsiEI	CGRYCG	1 cut(s)	735
BsiHKCI	CYCGRG	2 cut(s)	247, 653
BsiSI	CCGG	3 cut(s)	181, 499, 685
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	6 cut(s)	153, 187, 217, 319, 471, 629
BsmAI	GTCTC	1 cut(s)	310
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	4 cut(s)	32, 93, 609, 693
BsoBI	CYCGRG	2 cut(s)	247, 653
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp143I	GATC	5 cut(s)	141, 177, 436, 460, 474
Bsp19I	CCATGG	1 cut(s)	610
BspANI	GGCC	4 cut(s)	32, 93, 609, 693
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	6 cut(s)	15, 255, 462, 476, 648, 762
BspMAI	CTGCAG	1 cut(s)	369
BspMI	ACCTGC	1 cut(s)	793
BspPI	GGATC	5 cut(s)	172, 455, 468, 469, 482
BspQI	GCTCTTC	1 cut(s)	69
BspT107I	GGYRCC	1 cut(s)	760
BsrBI	CCGCTC	1 cut(s)	652
BssECI	CCNNGG	6 cut(s)	33, 257, 534, 577, 610, 694
BssMI	GATC	5 cut(s)	141, 177, 436, 460, 474
BssT1I	CCWWGG	3 cut(s)	257, 577, 610
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	1 cut(s)	327
Bst6I	CTCTTC	2 cut(s)	21, 69
BstC8I	GCNNGC	2 cut(s)	288, 717
BstDSI	CCRYGG	2 cut(s)	33, 610
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	5 cut(s)	144, 180, 439, 463, 477
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	5 cut(s)	141, 177, 436, 460, 474
BstMCI	CGRYCG	1 cut(s)	735
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 317, 655, 664, 725
BstNI	CCWGG	1 cut(s)	695
BstPAI	GACNNNNGTC	1 cut(s)	100
BstSCI	CCNGG	2 cut(s)	684, 693
BstSFI	CTRYAG	1 cut(s)	365
BstV1I	GCAGC	2 cut(s)	351, 602
BstV2I	GAAGAC	1 cut(s)	199
BstX2I	RGATCY	2 cut(s)	460, 474
BstXI	CCANNNNNNTGG	1 cut(s)	617
BstYI	RGATCY	2 cut(s)	460, 474
BsuRI	GGCC	4 cut(s)	32, 93, 609, 693
BtgI	CCRYGG	2 cut(s)	33, 610
BtgZI	GCGATG	1 cut(s)	389
BtsCI	GGATG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	323
BveI	ACCTGC	1 cut(s)	793
Cac8I	GCNNGC	2 cut(s)	288, 717
CciI	TCATGA	1 cut(s)	487
Cfr13I	GGNCC	3 cut(s)	254, 620, 691
Csp6I	GTAC	2 cut(s)	242, 467
CviAII	CATG	3 cut(s)	488, 611, 624
CviQI	GTAC	2 cut(s)	242, 467
DpnI	GATC	5 cut(s)	143, 179, 438, 462, 476
DpnII	GATC	5 cut(s)	141, 177, 436, 460, 474
EaeI	YGGCCR	2 cut(s)	91, 607
Eam1104I	CTCTTC	2 cut(s)	21, 69
EarI	CTCTTC	2 cut(s)	21, 69
EciI	GGCGGA	1 cut(s)	209
Eco130I	CCWWGG	3 cut(s)	257, 577, 610
Eco24I	GRGCYC	1 cut(s)	753
Eco47I	GGWCC	2 cut(s)	254, 620
Eco57I	CTGAAG	1 cut(s)	50
Eco88I	CYCGRG	2 cut(s)	247, 653
EcoO109I	RGGNCCY	2 cut(s)	254, 691
EcoRII	CCWGG	1 cut(s)	693
EcoT14I	CCWWGG	3 cut(s)	257, 577, 610
EcoT38I	GRGCYC	1 cut(s)	753
ErhI	CCWWGG	3 cut(s)	257, 577, 610
FaeI	CATG	3 cut(s)	491, 614, 627
FaiI	YATR	8 cut(s)	88, 200, 278, 297, 489, 567, 612, 625
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	3 cut(s)	487, 610, 623
FauI	CCCGC	1 cut(s)	808
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	7 cut(s)	6, 321, 365, 591, 650, 729, 792
FokI	GGATG	1 cut(s)	71
FriOI	GRGCYC	1 cut(s)	753
Fsp4HI	GCNGC	7 cut(s)	6, 321, 365, 591, 650, 729, 792
FspBI	CTAG	1 cut(s)	823
GluI	GCNGC	7 cut(s)	6, 321, 365, 591, 650, 729, 792
GsuI	CTGGAG	1 cut(s)	816
HaeIII	GGCC	4 cut(s)	32, 93, 609, 693
HapII	CCGG	3 cut(s)	181, 499, 685
Hin1II	CATG	3 cut(s)	491, 614, 627
HindIII	AAGCTT	1 cut(s)	717
HinfI	GANTC	5 cut(s)	40, 71, 235, 303, 504
HpaII	CCGG	3 cut(s)	181, 499, 685
HphI	GGTGA	6 cut(s)	49, 151, 241, 683, 793, 820
Hpy188I	TCNGA	3 cut(s)	407, 710, 745
Hpy188III	TCNNGA	2 cut(s)	68, 488
Hpy99I	CGWCG	3 cut(s)	130, 519, 706
HpyAV	CCTTC	2 cut(s)	103, 157
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	1 cut(s)	704
HpyCH4V	TGCA	5 cut(s)	331, 367, 562, 590, 667
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 317, 655, 664, 725
HpySE526I	ACGT	1 cut(s)	704
Hsp92II	CATG	3 cut(s)	491, 614, 627
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	5 cut(s)	141, 177, 436, 460, 474
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	19, 646
Lsp1109I	GCAGC	2 cut(s)	351, 602
LweI	GCATC	4 cut(s)	49, 340, 366, 686
MaeI	CTAG	1 cut(s)	823
MaeII	ACGT	1 cut(s)	704
MaeIII	GTNAC	4 cut(s)	37, 626, 781, 808
MalI	GATC	5 cut(s)	143, 179, 438, 462, 476
MbiI	CCGCTC	1 cut(s)	652
MboI	GATC	5 cut(s)	141, 177, 436, 460, 474
MboII	GAAGA	4 cut(s)	38, 56, 199, 244
MflI	RGATCY	2 cut(s)	460, 474
MhlI	GDGCHC	1 cut(s)	753
MluCI	AATT	1 cut(s)	212
MlyI	GAGTC	2 cut(s)	34, 312
MmeI	TCCRAC	1 cut(s)	723
MseI	TTAA	2 cut(s)	216, 525
MslI	CAYNNNNRTG	1 cut(s)	615
MspI	CCGG	3 cut(s)	181, 499, 685
MspR9I	CCNGG	2 cut(s)	686, 695
MvaI	CCWGG	1 cut(s)	695
MwoI	GCNNNNNNNGC	5 cut(s)	11, 317, 655, 664, 725
NciI	CCSGG	1 cut(s)	686
NcoI	CCATGG	1 cut(s)	610
NdeII	GATC	5 cut(s)	141, 177, 436, 460, 474
NlaIII	CATG	3 cut(s)	491, 614, 627
NlaIV	GGNNCC	6 cut(s)	15, 255, 462, 476, 648, 762
NmeAIII	GCCGAG	1 cut(s)	113
NmuCI	GTSAC	4 cut(s)	37, 626, 781, 808
PagI	TCATGA	1 cut(s)	487
PaqCI	CACCTGC	1 cut(s)	793
PciSI	GCTCTTC	1 cut(s)	69
PfeI	GAWTC	3 cut(s)	71, 235, 504
PflFI	GACNNNGTC	1 cut(s)	302
PflMI	CCANNNNNTGG	1 cut(s)	153
PkrI	GCNGC	7 cut(s)	7, 322, 366, 592, 651, 730, 793
PleI	GAGTC	2 cut(s)	34, 311
PpsI	GAGTC	2 cut(s)	34, 311
PpuMI	RGGWCCY	1 cut(s)	254
PshAI	GACNNNNGTC	1 cut(s)	100
Psp5II	RGGWCCY	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	693
PspN4I	GGNNCC	6 cut(s)	15, 255, 462, 476, 648, 762
PspPI	GGNCC	3 cut(s)	254, 620, 691
PspPPI	RGGWCCY	1 cut(s)	254
PstI	CTGCAG	1 cut(s)	369
PsuI	RGATCY	2 cut(s)	460, 474
PsyI	GACNNNGTC	1 cut(s)	302
RsaI	GTAC	2 cut(s)	243, 468
RsaNI	GTAC	2 cut(s)	242, 467
RseI	CAYNNNNRTG	1 cut(s)	615
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	216, 525
SatI	GCNGC	7 cut(s)	6, 321, 365, 591, 650, 729, 792
Sau3AI	GATC	5 cut(s)	141, 177, 436, 460, 474
Sau96I	GGNCC	3 cut(s)	254, 620, 691
ScaI	AGTACT	1 cut(s)	243
SchI	GAGTC	2 cut(s)	34, 312
ScrFI	CCNGG	2 cut(s)	686, 695
SduI	GDGCHC	1 cut(s)	753
SetI	ASST	9 cut(s)	231, 345, 524, 595, 638, 707, 721, 771, 807
SfaNI	GCATC	4 cut(s)	49, 340, 366, 686
SfcI	CTRYAG	1 cut(s)	365
SinI	GGWCC	2 cut(s)	254, 620
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	1 cut(s)	212
SspMI	CTAG	1 cut(s)	823
StyD4I	CCNGG	2 cut(s)	684, 693
StyI	CCWWGG	3 cut(s)	257, 577, 610
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	1 cut(s)	707
TaqI	TCGA	5 cut(s)	238, 315, 430, 680, 701
TasI	AATT	1 cut(s)	212
TatI	WGTACW	1 cut(s)	241
TauI	GCSGC	5 cut(s)	8, 323, 652, 731, 794
TfiI	GAWTC	3 cut(s)	71, 235, 504
Tru1I	TTAA	2 cut(s)	216, 525
Tru9I	TTAA	2 cut(s)	216, 525
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	4 cut(s)	37, 626, 781, 808
TseI	GCWGC	2 cut(s)	364, 590
Tsp45I	GTSAC	4 cut(s)	37, 626, 781, 808
TspDTI	ATGAA	1 cut(s)	476
TspGWI	ACGGA	5 cut(s)	6, 315, 467, 532, 800
TspRI	CASTG	1 cut(s)	330
Tth111I	GACNNNGTC	1 cut(s)	302
Van91I	CCANNNNNTGG	1 cut(s)	153
VpaK11BI	GGWCC	2 cut(s)	254, 620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XspI	CTAG	1 cut(s)	823
ZrmI	AGTACT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.