Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001975

Physical Location & Seq

Genomic Coordinates Reverse (-)

58052662 .. 58054367

Gene Structure 1706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG356900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCCCAGAAGGTTGGTTTCTGCCGCAGCTCTTTTGTGGGGTTTGCTTCTCTTGGCGACATTAGTTGTCATTCTGAATCGATTTAGCAATGATAAAGTCCTATCAGAGCCAAACACCCTCAAAAGCAAAAGTGAGATTGTTGAGGAAAGTGATGATCTGGAACAAGTCACCCACCAAGTTTTCTTCGACATCGAAATCGATGGAAAACCCGTTGGTCGCATAGTCATGGGTCTTTTTGGAAAAACAGTTCCAAAAACCATAGGTAGGTACCCAGGAGGGGATTTCACTCTTGGCGATGGAAGAGGTGGAGAATCGATTTATGGGGAAAAGTTTGCAGATGAAAACTTCAAAGTAAAGCACACTGGACCAGGCAAGCTAAAGTCTTCCTTGTTTCCGAGCAGTTACTCATGCAAAAGTTCTCCCAAAATGTTGGATGGTCACCATGTTGTATTTGGCAAGGTGCTTTCTGGAATGGACGTTGTGTACAAGGTTGAACGAGTAGGAGGATCGGATGGGATACCTAAGAGTGAGGTTGTTATCAAAGACAGTGGTGCACTTCCGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

188

Amino Acids

20.35

Weight (kDa)

7.81

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	93 - 182	1.1e-07	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29960 AT2G29960 AT2G29960 AT5G58710
fragaria_vesca	FvH4_3g38580 FvH4_7g24460
malus_domestica	MD01G1152800.v1.1 MD03G1070100.v1.1 MD07G1221700.v1.1 MD11G1073900.v1.1
prunus_persica	Prupe.2G249900_v2.0.a1 Prupe.2G249900_v2.0.a1 Prupe.6G057200_v2.0.a1
pyrus_communis	pycom01g17040 pycom03g05580 pycom07g20020 pycom11g06130
rosa_chinensis	RchiOBHm_Chr1g0370191 RchiOBHm_Chr5g0069561
rosa_laevigata	RLG00000027069 RLG00000036059 RLG00000036069 RLG00000036077
rosa_multiflora	Rmu_sc0000848.1_g000017 Rmu_sc0005633.1_g000002 Rmu_sc0011509.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011440 Rroxscaffold_4G00286750 Rroxscaffold_4G00287260
rosa_rugosa	Rorug01G0354600 Rorug05G0398300
rosa_samantha	Rh1AG363100 Rh1AG363300 Rh1BG326200 Rh1BG326500 Rh1CG339500 Rh1CG339800 Rh1DG356700 Rh1DG356900 Rh5AG455700 Rh5BG474600
rosa_wichuraiana	Rw0G023080 Rw1G031950 Rw1G031970 Rw5G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	267
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	514
AfaI	GTAC	2 cut(s)	269, 485
AfiI	CCNNNNNNNGG	2 cut(s)	264, 277
AgsI	TTSAA	2 cut(s)	349, 494
AjnI	CCWGG	2 cut(s)	271, 367
AloI	GAACNNNNNNTCC	2 cut(s)	231, 263
AluBI	AGCT	2 cut(s)	29, 376
AluI	AGCT	2 cut(s)	29, 376
Alw21I	GWGCWC	1 cut(s)	556
Alw44I	GTGCAC	1 cut(s)	552
AlwI	GGATC	1 cut(s)	514
ApaLI	GTGCAC	1 cut(s)	552
ApeKI	GCWGC	1 cut(s)	26
Asp718I	GGTACC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	365
AsuHPI	GGTGA	2 cut(s)	160, 431
AvaII	GGWCC	1 cut(s)	365
BaeGI	GKGCMC	1 cut(s)	556
BanI	GGYRCC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	4 cut(s)	194, 290, 428, 506
BciT130I	CCWGG	2 cut(s)	273, 369
BciVI	GTATCC	1 cut(s)	510
BfuI	GTATCC	1 cut(s)	510
BisI	GCNGC	2 cut(s)	24, 27
BlsI	GCNGC	2 cut(s)	25, 28
Bme1390I	CCNGG	2 cut(s)	273, 369
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	2 cut(s)	273, 369
BpiI	GAAGAC	1 cut(s)	375
Bsa29I	ATCGAT	3 cut(s)	79, 198, 314
BsaJI	CCNNGG	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 277
Bse1I	ACTGG	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	94
BseBI	CCWGG	2 cut(s)	273, 369
BseCI	ATCGAT	3 cut(s)	79, 198, 314
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	2 cut(s)	439, 517
BseLI	CCNNNNNNNGG	2 cut(s)	264, 277
BseMI	GCAATG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	367
BseSI	GKGCMC	1 cut(s)	556
BseXI	GCAGC	1 cut(s)	38
BshNI	GGYRCC	1 cut(s)	267
BshVI	ATCGAT	3 cut(s)	79, 198, 314
BsiHKAI	GWGCWC	1 cut(s)	556
BslI	CCNNNNNNNGG	2 cut(s)	264, 277
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp1407I	TGTACA	1 cut(s)	483
Bsp143I	GATC	2 cut(s)	154, 506
BspACI	CCGC	1 cut(s)	24
BspDI	ATCGAT	3 cut(s)	79, 198, 314
BspLI	GGNNCC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	514
BspT107I	GGYRCC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	94
BsrGI	TGTACA	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	2 cut(s)	154, 506
Bst2UI	CCWGG	2 cut(s)	273, 369
Bst4CI	ACNGT	2 cut(s)	247, 548
Bst6I	CTCTTC	1 cut(s)	295
BstAUI	TGTACA	1 cut(s)	483
BstC8I	GCNNGC	1 cut(s)	374
BstDEI	CTNAG	1 cut(s)	522
BstEII	GGTNACC	1 cut(s)	437
BstF5I	GGATG	2 cut(s)	439, 517
BstKTI	GATC	2 cut(s)	157, 509
BstMBI	GATC	2 cut(s)	154, 506
BstNI	CCWGG	2 cut(s)	273, 369
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	271, 367
BstSLI	GKGCMC	1 cut(s)	556
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	375
BstXI	CCANNNNNNTGG	2 cut(s)	13, 430
Bsu15I	ATCGAT	3 cut(s)	79, 198, 314
BsuI	GTATCC	1 cut(s)	510
BsuTUI	ATCGAT	3 cut(s)	79, 198, 314
BtgZI	GCGATG	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	439, 517
BtsIMutI	CAGTG	2 cut(s)	360, 553
Cac8I	GCNNGC	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	365
ClaI	ATCGAT	3 cut(s)	79, 198, 314
Csp6I	GTAC	2 cut(s)	268, 484
CspCI	CAANNNNNGTGG	2 cut(s)	529, 564
CviAII	CATG	3 cut(s)	226, 408, 443
CviJI	RGCY	3 cut(s)	29, 109, 376
CviKI_1	RGCY	3 cut(s)	29, 109, 376
CviQI	GTAC	2 cut(s)	268, 484
DdeI	CTNAG	1 cut(s)	522
DpnI	GATC	2 cut(s)	156, 508
DpnII	GATC	2 cut(s)	154, 506
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	365
Eco91I	GGTNACC	1 cut(s)	437
EcoO65I	GGTNACC	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	271, 367
FaeI	CATG	3 cut(s)	229, 411, 446
FaiI	YATR	6 cut(s)	221, 227, 260, 321, 409, 444
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FatI	CATG	3 cut(s)	225, 407, 442
Fnu4HI	GCNGC	2 cut(s)	24, 27
FokI	GGATG	2 cut(s)	446, 524
Fsp4HI	GCNGC	2 cut(s)	24, 27
GluI	GCNGC	2 cut(s)	24, 27
Hin1II	CATG	3 cut(s)	229, 411, 446
HinfI	GANTC	2 cut(s)	76, 311
HphI	GGTGA	2 cut(s)	160, 431
Hpy166II	GTNNAC	2 cut(s)	484, 554
Hpy188I	TCNGA	5 cut(s)	75, 106, 396, 511, 561
Hpy188III	TCNNGA	2 cut(s)	158, 468
Hpy8I	GTNNAC	2 cut(s)	484, 554
HpyAV	CCTTC	1 cut(s)	3
HpyCH4III	ACNGT	2 cut(s)	247, 548
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	3 cut(s)	335, 411, 554
HpyF3I	CTNAG	1 cut(s)	522
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	3 cut(s)	229, 411, 446
KpnI	GGTACC	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	154, 506
LpnPI	CCDG	8 cut(s)	19, 143, 258, 285, 348, 354, 381, 453
Lsp1109I	GCAGC	1 cut(s)	38
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	3 cut(s)	166, 401, 437
MalI	GATC	2 cut(s)	156, 508
MboI	GATC	2 cut(s)	154, 506
MboII	GAAGA	3 cut(s)	175, 312, 375
MhlI	GDGCHC	1 cut(s)	556
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	6 cut(s)	128, 136, 269, 296, 497, 523
MslI	CAYNNNNRTG	1 cut(s)	224
MspR9I	CCNGG	2 cut(s)	273, 369
MvaI	CCWGG	2 cut(s)	273, 369
NdeII	GATC	2 cut(s)	154, 506
NlaIII	CATG	3 cut(s)	229, 411, 446
NlaIV	GGNNCC	1 cut(s)	269
NmuCI	GTSAC	2 cut(s)	166, 437
PfeI	GAWTC	2 cut(s)	76, 311
PkrI	GCNGC	2 cut(s)	25, 28
Psp6I	CCWGG	2 cut(s)	271, 367
PspEI	GGTNACC	1 cut(s)	437
PspGI	CCWGG	2 cut(s)	271, 367
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	365
RsaI	GTAC	2 cut(s)	269, 485
RsaNI	GTAC	2 cut(s)	268, 484
RseI	CAYNNNNRTG	1 cut(s)	224
SatI	GCNGC	2 cut(s)	24, 27
Sau3AI	GATC	2 cut(s)	154, 506
Sau96I	GGNCC	1 cut(s)	365
ScrFI	CCNGG	2 cut(s)	273, 369
SduI	GDGCHC	1 cut(s)	556
SinI	GGWCC	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	224
SsiI	CCGC	1 cut(s)	24
StyD4I	CCNGG	2 cut(s)	271, 367
TaaI	ACNGT	2 cut(s)	247, 548
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	5 cut(s)	79, 186, 192, 198, 314
TatI	WGTACW	1 cut(s)	483
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	2 cut(s)	76, 311
TscAI	CASTG	2 cut(s)	367, 553
TseFI	GTSAC	2 cut(s)	166, 437
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	2 cut(s)	166, 437
TspDTI	ATGAA	1 cut(s)	354
TspRI	CASTG	2 cut(s)	367, 553
VneI	GTGCAC	1 cut(s)	552
VpaK11BI	GGWCC	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.