Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001954

Physical Location & Seq

Genomic Coordinates Forward (+)

13674255 .. 13675356

Gene Structure 1102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G32190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGAGCCAATACAGCCAAAACCAATCTTCAGGAGCTTATCCTACGCCGCCAGTGTCTACCGGCCCTTATATGACACCGCCACCGCTCGGTTACCCGACGAGCGACATCAGTCATGCCACGGTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTGAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

71

Amino Acids

7.38

Weight (kDa)

5.41

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05340 AT2G32190 AT2G32190 AT2G32200 AT2G32200 AT2G32210 AT2G32210 AT2G32210 AT3G22231 AT3G22235 AT3G22235 AT3G22240
fragaria_vesca	FvH4_1g21001 FvH4_6g39683
malus_domestica	MD01G1028400.v1.1 MD09G1137600.v1.1 MD17G1127900.v1.1
prunus_persica	Prupe.3G187200_v2.0.a1 Prupe.3G187300_v2.0.a1 Prupe.3G187300_v2.0.a1 Prupe.6G185000_v2.0.a1 Prupe.6G185100_v2.0.a1 Prupe.6G185200_v2.0.a1 Prupe.6G185300_v2.0.a1 Prupe.6G185400_v2.0.a1 Prupe.6G185500_v2.0.a1 Prupe.6G185600_v2.0.a1
pyrus_communis	pycom09g05870 pycom17g12030
rosa_chinensis	RchiOBHm_Chr2g0114501 RchiOBHm_Chr2g0114521 RchiOBHm_Chr2g0153711 RchiOBHm_Chr2g0153751
rosa_laevigata	RLG00000020722
rosa_multiflora	Rmu_sc0015718.1_g000007
rosa_roxburghii	Rroxscaffold_2G00130230 Rroxscaffold_2G00130260
rosa_rugosa	Rorug02G0441600
rosa_samantha	Rh2AG248300 Rh2AG505100 Rh2BG257900 Rh2CG251600 Rh2DG256300
rosa_wichuraiana	Rw2G019300 Rw7G035710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	56
AciI	CCGC	4 cut(s)	47, 77, 83, 176
AcoI	YGGCCR	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	163
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	128
AoxI	GGCC	2 cut(s)	61, 177
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	161
BccI	CCATC	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	128
BglI	GCCNNNNNGGC	1 cut(s)	122
BisI	GCNGC	2 cut(s)	47, 177
BlsI	GCNGC	2 cut(s)	48, 178
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	126
BoxI	GACNNNNGTC	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	117, 144
BsaWI	WCCGGW	1 cut(s)	127
BsaXI	ACNNNNNCTCC	4 cut(s)	109, 125, 139, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	117, 144
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	50
BshFI	GGCC	2 cut(s)	63, 179
BsiSI	CCGG	2 cut(s)	60, 128
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	128
BsnI	GGCC	2 cut(s)	63, 179
BspACI	CCGC	4 cut(s)	47, 77, 83, 176
BspANI	GGCC	2 cut(s)	63, 179
BspLI	GGNNCC	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	85
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	117, 144
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	208
BstDSI	CCRYGG	1 cut(s)	117
BstEII	GGTNACC	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	128
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 122
BstPAI	GACNNNNGTC	1 cut(s)	108
BstPI	GGTNACC	1 cut(s)	89
BsuRI	GGCC	2 cut(s)	63, 179
BtgI	CCRYGG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	208
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	62
CviAII	CATG	2 cut(s)	113, 181
CviJI	RGCY	7 cut(s)	6, 15, 35, 63, 125, 168, 179
CviKI_1	RGCY	7 cut(s)	6, 15, 35, 63, 125, 168, 179
EaeI	YGGCCR	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	12
Eco91I	GGTNACC	1 cut(s)	89
EcoO65I	GGTNACC	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	2 cut(s)	116, 184
FaiI	YATR	4 cut(s)	69, 71, 114, 182
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FatI	CATG	2 cut(s)	112, 180
FblI	GTMKAC	1 cut(s)	56
Fnu4HI	GCNGC	2 cut(s)	47, 177
Fsp4HI	GCNGC	2 cut(s)	47, 177
GluI	GCNGC	2 cut(s)	47, 177
HaeIII	GGCC	2 cut(s)	63, 179
HapII	CCGG	2 cut(s)	60, 128
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	116, 184
HinfI	GANTC	1 cut(s)	156
HpaII	CCGG	2 cut(s)	60, 128
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	1 cut(s)	215
Hpy188III	TCNNGA	2 cut(s)	30, 160
Hpy8I	GTNNAC	1 cut(s)	57
Hpy99I	CGWCG	2 cut(s)	100, 206
HpyCH4III	ACNGT	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 122
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	116, 184
LmnI	GCTCC	2 cut(s)	32, 130
LpnPI	CCDG	4 cut(s)	15, 63, 73, 141
MaeIII	GTNAC	1 cut(s)	89
MbiI	CCGCTC	1 cut(s)	85
MboII	GAAGA	1 cut(s)	18
MnlI	CCTC	1 cut(s)	209
MspI	CCGG	2 cut(s)	60, 128
MwoI	GCNNNNNNNGC	2 cut(s)	12, 122
NlaIII	CATG	2 cut(s)	116, 184
NlaIV	GGNNCC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	156
PflFI	GACNNNGTC	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	48, 178
PshAI	GACNNNNGTC	1 cut(s)	108
PspEI	GGTNACC	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	62
PsyI	GACNNNGTC	1 cut(s)	139
SatI	GCNGC	2 cut(s)	47, 177
Sau96I	GGNCC	1 cut(s)	62
SetI	ASST	1 cut(s)	37
SsiI	CCGC	4 cut(s)	47, 77, 83, 176
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	1 cut(s)	201
TauI	GCSGC	2 cut(s)	49, 179
TfiI	GAWTC	1 cut(s)	156
TscAI	CASTG	1 cut(s)	57
TspRI	CASTG	1 cut(s)	57
Tth111I	GACNNNGTC	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.