Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001954

Physical Location & Seq

Genomic Coordinates Reverse (-)

72777746 .. 72778501

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG505100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAGTTCAAGTGCTAACTCCGCAGCAGCTTACCCCGCTCCGGCTTCCCAACAGGGACGTTACATCCAGGCGCCGCCTCCAGCCGGCTATCCCACCATGACAGACGATCAGTTGCCCCGAAGCCACGGTCCAGTCGAGACCAAGTCGAAGGAGAAGATCCAATATTTTGAGGATGGGGCTTTCTTGATTGATTCTCTTGATCGATTAGACCCAGTTTCATACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

75

Amino Acids

8.13

Weight (kDa)

4.75

Isoelectric Point (pI)

56.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05340 AT2G32190 AT2G32190 AT2G32200 AT2G32200 AT2G32210 AT2G32210 AT2G32210 AT3G22231 AT3G22235 AT3G22235 AT3G22240
fragaria_vesca	FvH4_1g21001 FvH4_6g39683
malus_domestica	MD01G1028400.v1.1 MD09G1137600.v1.1 MD17G1127900.v1.1
prunus_persica	Prupe.3G187200_v2.0.a1 Prupe.3G187300_v2.0.a1 Prupe.3G187300_v2.0.a1 Prupe.6G185000_v2.0.a1 Prupe.6G185100_v2.0.a1 Prupe.6G185200_v2.0.a1 Prupe.6G185300_v2.0.a1 Prupe.6G185400_v2.0.a1 Prupe.6G185500_v2.0.a1 Prupe.6G185600_v2.0.a1
pyrus_communis	pycom09g05870 pycom17g12030
rosa_chinensis	RchiOBHm_Chr2g0114501 RchiOBHm_Chr2g0114521 RchiOBHm_Chr2g0153711 RchiOBHm_Chr2g0153751
rosa_laevigata	RLG00000020722
rosa_multiflora	Rmu_sc0015718.1_g000007
rosa_roxburghii	Rroxscaffold_2G00130230 Rroxscaffold_2G00130260
rosa_rugosa	Rorug02G0441600
rosa_samantha	Rh2AG248300 Rh2AG505100 Rh2BG257900 Rh2CG251600 Rh2DG256300
rosa_wichuraiana	Rw2G019300 Rw7G035710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	70
AccBSI	CCGCTC	1 cut(s)	38
AciI	CCGC	3 cut(s)	21, 36, 74
AclWI	GGATC	1 cut(s)	151
AcyI	GRCGYC	1 cut(s)	71
AfiI	CCNNNNNNNGG	2 cut(s)	40, 83
AgsI	TTSAA	1 cut(s)	9
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	23, 26
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	35, 38
BccI	CCATC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	131
BfoI	RGCGCY	1 cut(s)	74
BisI	GCNGC	3 cut(s)	24, 27, 74
BlsI	GCNGC	3 cut(s)	25, 28, 75
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	68
BmrI	ACTGGG	1 cut(s)	206
BmuI	ACTGGG	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	63
Bsa29I	ATCGAT	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 83
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	2 cut(s)	131, 212
BseBI	CCWGG	1 cut(s)	68
BseCI	ATCGAT	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	2 cut(s)	63, 178
BseLI	CCNNNNNNNGG	2 cut(s)	40, 83
BseNI	ACTGG	2 cut(s)	131, 212
BseXI	GCAGC	2 cut(s)	35, 38
BshNI	GGYRCC	1 cut(s)	70
BshVI	ATCGAT	1 cut(s)	202
BsiSI	CCGG	2 cut(s)	41, 84
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	40, 83
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	69
Bso31I	GGTCTC	1 cut(s)	131
Bsp143I	GATC	3 cut(s)	106, 156, 199
BspACI	CCGC	3 cut(s)	21, 36, 74
BspDI	ATCGAT	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	70
BspTNI	GGTCTC	1 cut(s)	131
BsrBI	CCGCTC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	131, 212
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	3 cut(s)	106, 156, 199
BssNI	GRCGYC	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	128
BstACI	GRCGYC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	85
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	63, 178
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	3 cut(s)	109, 159, 202
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	3 cut(s)	106, 156, 199
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 35
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	66
BstV1I	GCAGC	2 cut(s)	35, 38
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	202
BsuTUI	ATCGAT	1 cut(s)	202
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	63, 178
Cac8I	GCNNGC	1 cut(s)	85
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	128
ClaI	ATCGAT	1 cut(s)	202
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	6 cut(s)	29, 44, 83, 87, 123, 179
CviKI_1	RGCY	6 cut(s)	29, 44, 83, 87, 123, 179
DinI	GGCGCC	1 cut(s)	72
DpnI	GATC	3 cut(s)	108, 158, 201
DpnII	GATC	3 cut(s)	106, 156, 199
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	66
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
FaeI	CATG	1 cut(s)	100
FaiI	YATR	2 cut(s)	98, 220
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	1 cut(s)	96
FauI	CCCGC	1 cut(s)	43
Fnu4HI	GCNGC	3 cut(s)	24, 27, 74
FokI	GGATG	2 cut(s)	50, 185
Fsp4HI	GCNGC	3 cut(s)	24, 27, 74
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	3 cut(s)	24, 27, 74
GsuI	CTGGAG	1 cut(s)	63
HaeII	RGCGCY	1 cut(s)	74
HapII	CCGG	2 cut(s)	41, 84
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	2 cut(s)	41, 84
Hpy188III	TCNNGA	3 cut(s)	136, 184, 197
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	2 cut(s)	58, 222
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 35
HpySE526I	ACGT	2 cut(s)	58, 222
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	1 cut(s)	71
KasI	GGCGCC	1 cut(s)	70
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	106, 156, 199
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	7 cut(s)	38, 53, 54, 80, 93, 97, 144
Lsp1109I	GCAGC	2 cut(s)	35, 38
MaeII	ACGT	2 cut(s)	58, 222
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	3 cut(s)	108, 158, 201
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	3 cut(s)	106, 156, 199
MboII	GAAGA	1 cut(s)	166
MflI	RGATCY	1 cut(s)	156
Mly113I	GGCGCC	1 cut(s)	71
MnlI	CCTC	2 cut(s)	87, 163
MroNI	GCCGGC	1 cut(s)	83
MspI	CCGG	2 cut(s)	41, 84
MspR9I	CCNGG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	20, 35
NaeI	GCCGGC	1 cut(s)	85
NarI	GGCGCC	1 cut(s)	71
NdeII	GATC	3 cut(s)	106, 156, 199
NgoMIV	GCCGGC	1 cut(s)	83
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdiI	GCCGGC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	191
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	25, 28, 75
PluTI	GGCGCC	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	156
PsyI	GACNNNGTC	1 cut(s)	142
SatI	GCNGC	3 cut(s)	24, 27, 74
Sau3AI	GATC	3 cut(s)	106, 156, 199
Sau96I	GGNCC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	68
SetI	ASST	3 cut(s)	31, 61, 225
SfoI	GGCGCC	1 cut(s)	72
SinI	GGWCC	1 cut(s)	128
SsiI	CCGC	3 cut(s)	21, 36, 74
SspDI	GGCGCC	1 cut(s)	70
SspI	AATATT	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	2 cut(s)	61, 225
TaqI	TCGA	3 cut(s)	135, 146, 202
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	191
TseI	GCWGC	2 cut(s)	23, 26
TspDTI	ATGAA	1 cut(s)	207
Tth111I	GACNNNGTC	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.