Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015718.1

Orthogroup ID

OG0001954

Physical Location & Seq

Genomic Coordinates Reverse (-)

16263 .. 17699

Gene Structure 1437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015718.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgcgcgctccttcccctttggcagcagaagcattagcagttcgggaagcaattcttctggcaaactcctttcctcatatggatatcattatctcttcagattctcaaactttgatcaactccatctcccacaatctccctgcctctgattggaaagctgcaaccattatttctcaagtccggatgagttcaagcacaactagttctgcagcagcatacccgaagccaccttattcggctccaccacctgctggttatccaacaagatctgatgccggtggccaaaacggtgctcctgttccggtagagaccaagtcgaagggtgatgggttctggaagggatgctgtgctgctttgtgttgctgttgtatgttggatgcttgtttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

129

Amino Acids

13.4

Weight (kDa)

6.68

Isoelectric Point (pI)

58.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05340 AT2G32190 AT2G32190 AT2G32200 AT2G32200 AT2G32210 AT2G32210 AT2G32210 AT3G22231 AT3G22235 AT3G22235 AT3G22240
fragaria_vesca	FvH4_1g21001 FvH4_6g39683
malus_domestica	MD01G1028400.v1.1 MD09G1137600.v1.1 MD17G1127900.v1.1
prunus_persica	Prupe.3G187200_v2.0.a1 Prupe.3G187300_v2.0.a1 Prupe.3G187300_v2.0.a1 Prupe.6G185000_v2.0.a1 Prupe.6G185100_v2.0.a1 Prupe.6G185200_v2.0.a1 Prupe.6G185300_v2.0.a1 Prupe.6G185400_v2.0.a1 Prupe.6G185500_v2.0.a1 Prupe.6G185600_v2.0.a1
pyrus_communis	pycom09g05870 pycom17g12030
rosa_chinensis	RchiOBHm_Chr2g0114501 RchiOBHm_Chr2g0114521 RchiOBHm_Chr2g0153711 RchiOBHm_Chr2g0153751
rosa_laevigata	RLG00000020722
rosa_multiflora	Rmu_sc0015718.1_g000007
rosa_roxburghii	Rroxscaffold_2G00130230 Rroxscaffold_2G00130260
rosa_rugosa	Rorug02G0441600
rosa_samantha	Rh2AG248300 Rh2AG505100 Rh2BG257900 Rh2CG251600 Rh2DG256300
rosa_wichuraiana	Rw2G019300 Rw7G035710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	256
Acc36I	ACCTGC	1 cut(s)	256
AccB7I	CCANNNNNTGG	1 cut(s)	251
AccII	CGCG	1 cut(s)	6
AccIII	TCCGGA	1 cut(s)	180
AcoI	YGGCCR	1 cut(s)	280
AcuI	CTGAAG	1 cut(s)	81
AfiI	CCNNNNNNNGG	2 cut(s)	150, 251
AgsI	TTSAA	1 cut(s)	192
AhlI	ACTAGT	1 cut(s)	200
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	1 cut(s)	302
Aor13HI	TCCGGA	1 cut(s)	180
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	5 cut(s)	23, 158, 209, 212, 350
Asp700I	GAANNNNTTC	1 cut(s)	51
AspLEI	GCGC	2 cut(s)	6, 8
AsuHPI	GGTGA	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	5 cut(s)	35, 145, 221, 224, 337
BccI	CCATC	2 cut(s)	131, 320
BclI	TGATCA	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	302
BcuI	ACTAGT	1 cut(s)	200
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	207
BfuAI	ACCTGC	1 cut(s)	256
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	5 cut(s)	24, 159, 210, 213, 351
BlsI	GCNGC	5 cut(s)	25, 160, 211, 214, 352
BmiI	GGNNCC	1 cut(s)	240
BmsI	GCATC	3 cut(s)	262, 332, 367
BpuEI	CTTGAG	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	302
BsaWI	WCCGGW	2 cut(s)	180, 301
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 251
Bse118I	RCCGGY	1 cut(s)	275
BseAI	TCCGGA	1 cut(s)	180
BseGI	GGATG	3 cut(s)	189, 347, 382
BseLI	CCNNNNNNNGG	2 cut(s)	150, 251
BsePI	GCGCGC	1 cut(s)	4
BseXI	GCAGC	5 cut(s)	35, 145, 221, 224, 337
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	3 cut(s)	181, 276, 302
BslI	CCNNNNNNNGG	2 cut(s)	150, 251
BsmAI	GTCTC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	282
Bso31I	GGTCTC	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp13I	TCCGGA	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	114, 266
BspANI	GGCC	1 cut(s)	282
BspEI	TCCGGA	1 cut(s)	180
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	240
BspMAI	CTGCAG	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	256
BspTNI	GGTCTC	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	275
BssHII	GCGCGC	1 cut(s)	4
BssMI	GATC	2 cut(s)	114, 266
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	6
BstF5I	GGATG	3 cut(s)	189, 347, 382
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	2 cut(s)	6, 8
BstKTI	GATC	2 cut(s)	117, 269
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	2 cut(s)	114, 266
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstSFI	CTRYAG	1 cut(s)	207
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	5 cut(s)	35, 145, 221, 224, 337
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	282
BtsCI	GGATG	3 cut(s)	189, 347, 382
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	2 cut(s)	6, 8
Cfr10I	RCCGGY	1 cut(s)	275
CviJI	RGCY	4 cut(s)	158, 226, 239, 282
CviKI_1	RGCY	4 cut(s)	158, 226, 239, 282
DpnI	GATC	2 cut(s)	116, 268
DpnII	GATC	2 cut(s)	114, 266
EaeI	YGGCCR	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Eco31I	GGTCTC	1 cut(s)	302
Eco32I	GATATC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	81
EcoRV	GATATC	1 cut(s)	85
FaiI	YATR	4 cut(s)	78, 80, 217, 371
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
FauNDI	CATATG	1 cut(s)	78
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	5 cut(s)	24, 159, 210, 213, 351
FokI	GGATG	2 cut(s)	196, 354
Fsp4HI	GCNGC	5 cut(s)	24, 159, 210, 213, 351
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	2 cut(s)	5, 7
GluI	GCNGC	5 cut(s)	24, 159, 210, 213, 351
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	3 cut(s)	181, 276, 302
HhaI	GCGC	2 cut(s)	6, 8
Hin6I	GCGC	2 cut(s)	4, 6
HinP1I	GCGC	2 cut(s)	4, 6
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	3 cut(s)	181, 276, 302
HphI	GGTGA	1 cut(s)	335
Hpy188I	TCNGA	3 cut(s)	100, 148, 271
Hpy188III	TCNNGA	3 cut(s)	44, 181, 334
HpyAV	CCTTC	3 cut(s)	21, 313, 331
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4V	TGCA	2 cut(s)	161, 209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HspAI	GCGC	2 cut(s)	4, 6
Kpn2I	TCCGGA	1 cut(s)	180
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	114, 266
LmnI	GCTCC	3 cut(s)	13, 244, 298
LpnPI	CCDG	9 cut(s)	44, 153, 194, 237, 261, 289, 309, 315, 319
Lsp1109I	GCAGC	5 cut(s)	35, 145, 221, 224, 337
LweI	GCATC	3 cut(s)	262, 332, 367
MaeI	CTAG	1 cut(s)	201
MalI	GATC	2 cut(s)	116, 268
MboI	GATC	2 cut(s)	114, 266
MboII	GAAGA	2 cut(s)	47, 87
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	295
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	1 cut(s)	51
MluNI	TGGCCA	1 cut(s)	282
MmeI	TCCRAC	2 cut(s)	284, 354
MnlI	CCTC	2 cut(s)	84, 154
Mox20I	TGGCCA	1 cut(s)	282
MroI	TCCGGA	1 cut(s)	180
MroXI	GAANNNNTTC	1 cut(s)	51
MscI	TGGCCA	1 cut(s)	282
Msp20I	TGGCCA	1 cut(s)	282
MspI	CCGG	3 cut(s)	181, 276, 302
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeI	CATATG	1 cut(s)	78
NdeII	GATC	2 cut(s)	114, 266
NlaIV	GGNNCC	1 cut(s)	240
PaqCI	CACCTGC	1 cut(s)	256
PauI	GCGCGC	1 cut(s)	4
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	101
PflFI	GACNNNGTC	1 cut(s)	313
PflMI	CCANNNNNTGG	1 cut(s)	251
PkrI	GCNGC	5 cut(s)	25, 160, 211, 214, 352
PspN4I	GGNNCC	1 cut(s)	240
PstI	CTGCAG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	266
PsyI	GACNNNGTC	1 cut(s)	313
PteI	GCGCGC	1 cut(s)	4
SatI	GCNGC	5 cut(s)	24, 159, 210, 213, 351
Sau3AI	GATC	2 cut(s)	114, 266
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	3 cut(s)	160, 232, 250
SfaNI	GCATC	3 cut(s)	262, 332, 367
SfcI	CTRYAG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
SpeI	ACTAGT	1 cut(s)	200
Sse9I	AATT	1 cut(s)	51
SspMI	CTAG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	290
TaqI	TCGA	1 cut(s)	317
TasI	AATT	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	101
TseI	GCWGC	5 cut(s)	23, 158, 209, 212, 350
Tth111I	GACNNNGTC	1 cut(s)	313
Van91I	CCANNNNNTGG	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.